Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001246

Physical Location & Seq

Genomic Coordinates Reverse (-)

1964420 .. 1967500

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06440.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAGAAGAAACGAGAGATCTGTGGTTATAGAGACAAATTAGACAAGACCTTATCTTCTCCTGAACTCACTAATCACGAGACTCTCAAATCTCTTCTCAGAAACCAGCTTGAAGAGTGTGATGAGAATATATTGGATAAAAGAACAGATGATGTATCCAAGTTACTTAGCAAGCTTAGGAGTGTTTCCATGACTGATCATCAAGTTTCTAAATTAACCAACGATGGTGATTGGAAATTGAAACATGATCTTGAAGATTGCCGTGTTATGTACCGTGAAGGACTCGATGGAAGTCCTTTTCACACATTGCTCGTTGAAGGTTACATGGATGGTCCTATCCACGAATGTTTATGCGTATCGTGGGAATCAACTCTCTACAAGAAATGGTGGCCACAATATGCGTTTCCTCCATTCAGGATCTTAAAAAGCACATGCTTGCAAAAGGTCGGGGTCGGTGAACAAATTTGTTTAGCAAGGATGAAGGTACCATGGCCATTGACGGAAAGAGAGATGATTCTGCACTATTTCTCTTTTGAATACTTTAAAGATGGCTTAGTCGTCATCCTTCTGAACACGATCTCTGATTTAAATAGCATTGGAGTTTCCTCTACGGACATCATCATACCTGAATCACCGGATGCAGTGAGGATGGATCTCGTAGGCGGATTTGTTTTACAAAAGGTTACTCCACAGAGGAGTTACTTCAGAACGATAGGGGATATGGATATAAAGCTGGACTTGATGCCACCATCTCTTATGAATTTTATATCTAGGCAGCTGATCGGCAACGGTTTCAGACTATATAAAAAGGTCAGACAATCTGGTTTTATGATTTTGTTTGTTTTAATGTCAGGTAGGTACTTGAGTGATAATATGTTTCCGTATTTGAATGTAACAGTCAGTTGCTTCCGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

35.32

Weight (kDa)

7.56

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440
fragaria_vesca	FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770
malus_domestica	MD12G1043900.v1.1 MD14G1042900.v1.1
prunus_persica	Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1
pyrus_communis	pycom12g03770 pycom12g03780 pycom12g03790 pycom14g03640 pycom14g03650
rosa_chinensis	RchiOBHm_Chr3g0476671
rosa_laevigata	RLG00000001975 RLG00000023756
rosa_multiflora	Rmu_co8489431.1_g000001 Rmu_sc0008241.1_g000019 Rmu_sc0027136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235830 Rroxscaffold_6G00405100
rosa_rugosa	Rorug03G0156400 Rorug03G0156500 Rorug03G0156600
rosa_samantha	Rh3AG206800 Rh3BG239300 Rh3CG233200 Rh3DG233100 Rh3DG233200
rosa_wichuraiana	Rw3G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AciI	CCGC	1 cut(s)	663
AclWI	GGATC	2 cut(s)	425, 660
AcoI	YGGCCR	2 cut(s)	389, 491
AcsI	RAATTY	2 cut(s)	462, 760
AcuI	CTGAAG	1 cut(s)	688
AfaI	GTAC	3 cut(s)	272, 486, 860
AgsI	TTSAA	6 cut(s)	113, 241, 254, 317, 536, 889
AluBI	AGCT	5 cut(s)	109, 175, 733, 778, 915
AluI	AGCT	5 cut(s)	109, 175, 733, 778, 915
Alw26I	GTCTC	2 cut(s)	27, 74
AlwI	GGATC	2 cut(s)	425, 660
AoxI	GGCC	2 cut(s)	389, 491
ApeKI	GCWGC	1 cut(s)	775
ApoI	RAATTY	2 cut(s)	462, 760
Asp718I	GGTACC	1 cut(s)	484
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	239, 467, 624
AvaII	GGWCC	1 cut(s)	332
BaeI	ACNNNNGTAYC	2 cut(s)	850, 883
BalI	TGGCCA	2 cut(s)	391, 493
BanI	GGYRCC	1 cut(s)	484
BauI	CACGAG	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	787
BccI	CCATC	6 cut(s)	218, 281, 323, 542, 643, 757
BceAI	ACGGC	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	27, 74
BfaI	CTAG	1 cut(s)	771
BfuI	GTATCC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	1 cut(s)	776
BlsI	GCNGC	1 cut(s)	777
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	486
BmsI	GCATC	2 cut(s)	628, 732
Bpu10I	CCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	883
BsaJI	CCNNGG	1 cut(s)	488
BsaWI	WCCGGW	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	5 cut(s)	334, 483, 561, 643, 654
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	787
BsgI	GTGCAG	1 cut(s)	503
BshFI	GGCC	2 cut(s)	391, 493
BshNI	GGYRCC	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	27, 74
BsnI	GGCC	2 cut(s)	391, 493
Bsp143I	GATC	7 cut(s)	18, 196, 247, 417, 576, 652, 780
Bsp19I	CCATGG	1 cut(s)	488
BspACI	CCGC	1 cut(s)	663
BspANI	GGCC	2 cut(s)	391, 493
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	425, 660
BspT107I	GGYRCC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	7 cut(s)	18, 196, 247, 417, 576, 652, 780
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	3 cut(s)	275, 791, 898
Bst6I	CTCTTC	2 cut(s)	99, 108
BstC8I	GCNNGC	2 cut(s)	173, 437
BstDEI	CTNAG	4 cut(s)	98, 167, 176, 553
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	5 cut(s)	334, 483, 561, 643, 654
BstKTI	GATC	7 cut(s)	21, 199, 250, 420, 579, 655, 783
BstMAI	GTCTC	2 cut(s)	27, 74
BstMBI	GATC	7 cut(s)	18, 196, 247, 417, 576, 652, 780
BstMWI	GCNNNNNNNGC	1 cut(s)	912
BstNSI	RCATGY	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	787
BstX2I	RGATCY	3 cut(s)	18, 417, 652
BstYI	RGATCY	3 cut(s)	18, 417, 652
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	391, 493
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	5 cut(s)	334, 483, 561, 643, 654
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	2 cut(s)	173, 437
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	3 cut(s)	271, 485, 859
CviAII	CATG	5 cut(s)	190, 245, 325, 432, 489
CviJI	RGCY	8 cut(s)	109, 175, 391, 493, 552, 733, 778, 915
CviKI_1	RGCY	8 cut(s)	109, 175, 391, 493, 552, 733, 778, 915
CviQI	GTAC	3 cut(s)	271, 485, 859
DdeI	CTNAG	4 cut(s)	98, 167, 176, 553
DpnI	GATC	7 cut(s)	20, 198, 249, 419, 578, 654, 782
DpnII	GATC	7 cut(s)	18, 196, 247, 417, 576, 652, 780
DraI	TTTAAA	2 cut(s)	544, 588
EaeI	YGGCCR	2 cut(s)	389, 491
Eam1104I	CTCTTC	2 cut(s)	99, 108
EarI	CTCTTC	2 cut(s)	99, 108
EciI	GGCGGA	1 cut(s)	678
Eco130I	CCWWGG	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	5 cut(s)	193, 248, 328, 435, 492
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FatI	CATG	5 cut(s)	189, 244, 324, 431, 488
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	776
FokI	GGATG	5 cut(s)	341, 490, 548, 650, 661
Fsp4HI	GCNGC	1 cut(s)	776
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	1 cut(s)	776
HaeIII	GGCC	2 cut(s)	391, 493
HapII	CCGG	1 cut(s)	635
Hin1II	CATG	5 cut(s)	193, 248, 328, 435, 492
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	5 cut(s)	82, 282, 365, 514, 629
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	3 cut(s)	239, 467, 624
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	6 cut(s)	101, 570, 583, 707, 797, 815
Hpy188III	TCNNGA	4 cut(s)	62, 77, 251, 415
Hpy8I	GTNNAC	1 cut(s)	458
HpyAV	CCTTC	4 cut(s)	272, 311, 475, 575
HpyCH4III	ACNGT	3 cut(s)	275, 791, 898
HpyCH4V	TGCA	4 cut(s)	4, 439, 520, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	912
HpyF3I	CTNAG	4 cut(s)	98, 167, 176, 553
Hsp92II	CATG	5 cut(s)	193, 248, 328, 435, 492
KpnI	GGTACC	1 cut(s)	488
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	7 cut(s)	18, 196, 247, 417, 576, 652, 780
LpnPI	CCDG	8 cut(s)	75, 119, 400, 639, 648, 719, 807, 837
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	2 cut(s)	628, 732
MaeI	CTAG	1 cut(s)	771
MaeIII	GTNAC	5 cut(s)	162, 320, 682, 698, 892
MalI	GATC	7 cut(s)	20, 198, 249, 419, 578, 654, 782
MboI	GATC	7 cut(s)	18, 196, 247, 417, 576, 652, 780
MboII	GAAGA	5 cut(s)	19, 48, 86, 125, 266
MflI	RGATCY	3 cut(s)	18, 417, 652
MlsI	TGGCCA	2 cut(s)	391, 493
MluCI	AATT	5 cut(s)	38, 212, 236, 462, 760
MluNI	TGGCCA	2 cut(s)	391, 493
MlyI	GAGTC	2 cut(s)	76, 276
MnlI	CCTC	4 cut(s)	417, 616, 639, 687
Mox20I	TGGCCA	2 cut(s)	391, 493
MscI	TGGCCA	2 cut(s)	391, 493
MseI	TTAA	5 cut(s)	215, 422, 543, 587, 845
Msp20I	TGGCCA	2 cut(s)	391, 493
MspA1I	CMGCKG	1 cut(s)	778
MspI	CCGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	1 cut(s)	912
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	7 cut(s)	18, 196, 247, 417, 576, 652, 780
NlaIII	CATG	5 cut(s)	193, 248, 328, 435, 492
NlaIV	GGNNCC	1 cut(s)	486
NspI	RCATGY	1 cut(s)	435
PfeI	GAWTC	3 cut(s)	365, 514, 629
PkrI	GCNGC	1 cut(s)	777
PleI	GAGTC	2 cut(s)	76, 276
PpsI	GAGTC	2 cut(s)	76, 276
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	3 cut(s)	18, 417, 652
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	3 cut(s)	272, 486, 860
RsaNI	GTAC	3 cut(s)	271, 485, 859
SaqAI	TTAA	5 cut(s)	215, 422, 543, 587, 845
SatI	GCNGC	1 cut(s)	776
Sau3AI	GATC	7 cut(s)	18, 196, 247, 417, 576, 652, 780
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	2 cut(s)	76, 276
SfaNI	GCATC	2 cut(s)	628, 732
SinI	GGWCC	1 cut(s)	332
SmiI	ATTTAAAT	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	862
SmoI	CTYRAG	1 cut(s)	862
Sse9I	AATT	5 cut(s)	38, 212, 236, 462, 760
SsiI	CCGC	1 cut(s)	663
SspMI	CTAG	1 cut(s)	771
StyI	CCWWGG	1 cut(s)	488
SwaI	ATTTAAAT	1 cut(s)	588
TaaI	ACNGT	3 cut(s)	275, 791, 898
TaqI	TCGA	1 cut(s)	285
TasI	AATT	5 cut(s)	38, 212, 236, 462, 760
TfiI	GAWTC	3 cut(s)	365, 514, 629
Tru1I	TTAA	5 cut(s)	215, 422, 543, 587, 845
Tru9I	TTAA	5 cut(s)	215, 422, 543, 587, 845
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	1 cut(s)	775
TspDTI	ATGAA	2 cut(s)	494, 773
TspGWI	ACGGA	4 cut(s)	515, 626, 870, 899
TspRI	CASTG	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	2 cut(s)	462, 760
XceI	RCATGY	1 cut(s)	435
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.