Rmu_sc0008241.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008241.1
OG0001246
Physical Location & Seq
Forward (+)
91218 .. 97845
6628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008241.1_g000019.1.cds

Sequence Viewer

Length: 1887 bp
atggagaaaaagagaaaaatcactcaatacagagagaggctggacaagacactgacatctcctaatctaacaaataaggaggctctaaaagtccttgtcaaggatcagcttttgcgatcttcagaaaatgaaattgaaggttgtaatgcaaatgtgatagaagaaaggacggctgaggtgtcaaatttgcttgacatgttgaggagtgtttcagttggtgatgacgagcggttgaaaacttgtgataccccgtcacgtcctgaatggaaattaaaacaggacaatgaggagttccgggttatgtatcgtgagggcatccaaggttctccatttcatacattacttgttgaaggttacgtagacgggcctgtagatgtctgtttgtgcatctcatgtgaggcagacctttacaagaaatggtggcctcagtctaccattccaacttttaaaattctctatgggaagtgtttacagaaggtcgggattggcgaacagatatctgtagtgaggatgaagattccgtggccactttcacctagggaagctgttgtgcactattttgtgtttgagtactatgaagatgacctggttgttgttctcttgaacacgatctctgattttggaggcattgatggtggccttaaaaatgaggcaactgatggagtaaaggatgcagttaggatagatgtagttggtggctttgctttgcagaaggttactgatgatagaagttactttcggacaatagcaaatatggatataaagatggattttgtcccaccgtcccttataaattttgtctcaagacagctcattggcaacggtttcaggctgtatcaaaaggtagtgtcttctaagcttaatcgtgatgaagattacagcaaggctttgagaggcccactatactctcgcatacgtgaagctctttattcacttcatgaatcaagccggcttctggagggcaaaaagttaaacggtgatgcatccaatctctctgaagaaaatctagttaaacataaaatgaatgatttgaagttggtggatatgaatgagaaagttcataatgaacaccttgcaagtgaagctaccccagatgatgcacatgttactggaggaaacactctttgtgagattgaggaggtagagagtgaagaaagcaagactgaggagattaaaaatgaaaaaagcaagattgaggagttagagggcaaagaaagcaggcagcttgaggatcaaacattcaaaagaattcccgaaaggggacatgtaattggaaagagaaacattttcatcagttctgaggtggaagaagctctaggaacaatagaaaaagtcattttgagggttaggcaatataggttgagtgctgaaatgccatcctctggtttcaccaatgaagtctcacgaaaggaaaatgatggaggcaacccagagtccttagaagatgaagtccgctcaagtgaacatttttctgcagtccctaaaaatgagggcactgaaggggcgttgactgcacctccaaggaatagcaatgccattcaaaacataagttatgcaggctcaaattatttgtcaaaggaagttaaccataacagaatagtacctacttccccattgtgttcctcccaagatgggattgttgagatacctgttgtggataacatcaccagcaagagccataaccctaacgagttcgccagagccgctgttgtcgccgagttagtccggtggctgccctacccaaacaaccttggcatccataccgcacaccaaacctattggtatttcgtcgctacaacaacacgaactcctccgagtcaagtaagatctgctcgcctcctccggaagaccaacgcagctccttcaatcgtaacactgccatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

628

Amino Acids

70.84

Weight (kDa)

5.61

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
AccB7I CCANNNNNTGG 1 cut(s) 1382
AccBSI CCGCTC 2 cut(s) 229, 1455
AccI GTMKAC 2 cut(s) 360, 431
AccIII TCCGGA 1 cut(s) 1842
AciI CCGC 4 cut(s) 229, 1453, 1704, 1764
AclWI GGATC 2 cut(s) 111, 1239
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 4 cut(s) 184, 450, 793, 1248
AcuI CTGAAG 3 cut(s) 105, 1017, 1518
AfaI GTAC 2 cut(s) 572, 1602
AfiI CCNNNNNNNGG 5 cut(s) 100, 955, 1259, 1382, 1632
AflIII ACRYGT 3 cut(s) 195, 1102, 1264
AgsI TTSAA 8 cut(s) 137, 235, 350, 604, 1033, 1243, 1541, 1866
AjiI CACGTC 1 cut(s) 257
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 9 cut(s) 109, 545, 811, 859, 923, 1085, 1225, 1313, 1859
AluI AGCT 9 cut(s) 109, 545, 811, 859, 923, 1085, 1225, 1313, 1859
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 805, 1405
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 2 cut(s) 111, 1239
Aor13HI TCCGGA 1 cut(s) 1842
AoxI GGCC 5 cut(s) 365, 422, 524, 637, 895
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 3 cut(s) 1222, 1732, 1856
ApoI RAATTY 4 cut(s) 184, 450, 793, 1248
ArsI GACNNNNNNTTYG 2 cut(s) 1556, 1588
AspA2I CCTAGG 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 365, 896
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 5 cut(s) 230, 525, 989, 1381, 1657
AvrII CCTAGG 1 cut(s) 536
BaeGI GKGCMC 2 cut(s) 555, 1496
BalI TGGCCA 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 843, 1853
Bbv12I GWGCWC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 1234, 1719, 1868
BccI CCATC 6 cut(s) 626, 653, 760, 1384, 1412, 1625
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 587
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 805, 1405
BfaI CTAG 3 cut(s) 537, 1007, 1316
BfmI CTRYAG 3 cut(s) 369, 501, 1473
BglII AGATCT 1 cut(s) 1826
BisI GCNGC 4 cut(s) 1223, 1704, 1733, 1857
BlnI CCTAGG 1 cut(s) 536
BlsI GCNGC 4 cut(s) 1224, 1705, 1734, 1858
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 296, 587
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 365, 896
BmrFI CCNGG 2 cut(s) 296, 587
BmsI GCATC 7 cut(s) 324, 396, 661, 970, 992, 1087, 1764
BpiI GAAGAC 2 cut(s) 843, 1853
BpmI CTGGAG 2 cut(s) 977, 1131
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 3 cut(s) 787, 1247, 1441
BpuMI CCSGG 1 cut(s) 296
BsaAI YACGTR 2 cut(s) 358, 917
BsaJI CCNNGG 5 cut(s) 319, 521, 536, 1520, 1750
BsaWI WCCGGW 2 cut(s) 1725, 1842
BsaXI ACNNNNNCTCC 4 cut(s) 1501, 1531, 1792, 1822
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 955, 1259, 1382, 1632
Bse118I RCCGGY 1 cut(s) 948
Bse1I ACTGG 1 cut(s) 1114
Bse3DI GCAATG 1 cut(s) 1537
BseAI TCCGGA 1 cut(s) 1842
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 5 cut(s) 319, 521, 536, 1520, 1750
BseGI GGATG 6 cut(s) 315, 516, 676, 983, 1376, 1755
BseLI CCNNNNNNNGG 5 cut(s) 100, 955, 1259, 1382, 1632
BseMI GCAATG 1 cut(s) 1537
BseMII CTCAG 4 cut(s) 165, 440, 1155, 1290
BseNI ACTGG 1 cut(s) 1114
BseRI GAGGAG 7 cut(s) 217, 302, 1151, 1181, 1211, 1800, 1829
BseSI GKGCMC 2 cut(s) 555, 1496
BseXI GCAGC 3 cut(s) 1234, 1719, 1868
BsgI GTGCAG 1 cut(s) 1497
BshFI GGCC 5 cut(s) 367, 424, 526, 639, 897
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 4 cut(s) 295, 949, 1726, 1843
BslFI GGGAC 4 cut(s) 761, 769, 1275, 1463
BslI CCNNNNNNNGG 5 cut(s) 100, 955, 1259, 1382, 1632
BsmAI GTCTC 2 cut(s) 805, 1405
BsmFI GGGAC 4 cut(s) 761, 769, 1275, 1463
BsnI GGCC 5 cut(s) 367, 424, 526, 639, 897
Bsp1286I GDGCHC 2 cut(s) 555, 1496
Bsp13I TCCGGA 1 cut(s) 1842
Bsp143I GATC 5 cut(s) 103, 116, 609, 1231, 1826
BspACI CCGC 4 cut(s) 229, 1453, 1704, 1764
BspANI GGCC 5 cut(s) 367, 424, 526, 639, 897
BspCNI CTCAG 4 cut(s) 166, 439, 1156, 1291
BspEI TCCGGA 1 cut(s) 1842
BspHI TCATGA 1 cut(s) 937
BspMAI CTGCAG 1 cut(s) 1477
BspPI GGATC 2 cut(s) 111, 1239
BsrBI CCGCTC 2 cut(s) 229, 1455
BsrDI GCAATG 1 cut(s) 1537
BsrFI RCCGGY 1 cut(s) 948
BsrI ACTGG 1 cut(s) 1114
BssAI RCCGGY 1 cut(s) 948
BssECI CCNNGG 5 cut(s) 319, 521, 536, 1520, 1750
BssMI GATC 5 cut(s) 103, 116, 609, 1231, 1826
BssT1I CCWWGG 4 cut(s) 319, 536, 1520, 1750
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 3 cut(s) 783, 824, 977
BstBAI YACGTR 2 cut(s) 358, 917
BstC8I GCNNGC 4 cut(s) 950, 1220, 1558, 1834
BstDEI CTNAG 6 cut(s) 174, 426, 855, 1164, 1299, 1438
BstDSI CCRYGG 1 cut(s) 521
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 6 cut(s) 315, 516, 676, 983, 1376, 1755
BstKTI GATC 5 cut(s) 106, 119, 612, 1234, 1829
BstMAI GTCTC 2 cut(s) 805, 1405
BstMBI GATC 5 cut(s) 103, 116, 609, 1231, 1826
BstMWI GCNNNNNNNGC 5 cut(s) 1082, 1215, 1511, 1703, 1712
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 3 cut(s) 199, 1106, 1268
BstSCI CCNGG 2 cut(s) 294, 585
BstSFI CTRYAG 3 cut(s) 369, 501, 1473
BstSLI GKGCMC 2 cut(s) 555, 1496
BstSNI TACGTA 1 cut(s) 358
BstV1I GCAGC 3 cut(s) 1234, 1719, 1868
BstV2I GAAGAC 2 cut(s) 843, 1853
BstX2I RGATCY 1 cut(s) 1826
BstYI RGATCY 1 cut(s) 1826
BsuRI GGCC 5 cut(s) 367, 424, 526, 639, 897
BtgI CCRYGG 1 cut(s) 521
BtrI CACGTC 1 cut(s) 257
BtsCI GGATG 6 cut(s) 315, 516, 676, 983, 1376, 1755
BtsI GCAGTG 1 cut(s) 1874
BtsIMutI CAGTG 3 cut(s) 50, 1494, 1874
Cac8I GCNNGC 4 cut(s) 950, 1220, 1558, 1834
CciI TCATGA 1 cut(s) 937
Cfr10I RCCGGY 1 cut(s) 948
Cfr13I GGNCC 2 cut(s) 365, 896
CsiI ACCWGGT 1 cut(s) 585
Csp6I GTAC 2 cut(s) 571, 1601
CviAII CATG 5 cut(s) 196, 393, 938, 1103, 1265
CviQI GTAC 2 cut(s) 571, 1601
DdeI CTNAG 6 cut(s) 174, 426, 855, 1164, 1299, 1438
DpnI GATC 5 cut(s) 105, 118, 611, 1233, 1828
DpnII GATC 5 cut(s) 103, 116, 609, 1231, 1826
DraI TTTAAA 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 524
Eco105I TACGTA 1 cut(s) 358
Eco130I CCWWGG 4 cut(s) 319, 536, 1520, 1750
Eco32I GATATC 1 cut(s) 498
Eco57I CTGAAG 3 cut(s) 105, 1017, 1518
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 1248
EcoRII CCWGG 1 cut(s) 585
EcoRV GATATC 1 cut(s) 498
EcoT14I CCWWGG 4 cut(s) 319, 536, 1520, 1750
EcoT22I ATGCAT 1 cut(s) 985
ErhI CCWWGG 4 cut(s) 319, 536, 1520, 1750
FaeI CATG 5 cut(s) 199, 396, 941, 1106, 1268
FaqI GGGAC 4 cut(s) 761, 769, 1275, 1463
FatI CATG 5 cut(s) 195, 392, 937, 1102, 1264
FblI GTMKAC 2 cut(s) 360, 431
Fnu4HI GCNGC 4 cut(s) 1223, 1704, 1733, 1857
FokI GGATG 6 cut(s) 302, 523, 683, 970, 1363, 1742
Fsp4HI GCNGC 4 cut(s) 1223, 1704, 1733, 1857
FspBI CTAG 3 cut(s) 537, 1007, 1316
GluI GCNGC 4 cut(s) 1223, 1704, 1733, 1857
GsuI CTGGAG 2 cut(s) 977, 1131
HaeIII GGCC 5 cut(s) 367, 424, 526, 639, 897
HapII CCGG 4 cut(s) 295, 949, 1726, 1843
Hin1II CATG 5 cut(s) 199, 396, 941, 1106, 1268
HincII GTYRAC 2 cut(s) 1509, 1585
HindII GTYRAC 2 cut(s) 1509, 1585
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 4 cut(s) 517, 941, 1433, 1816
HpaI GTTAAC 1 cut(s) 1585
HpaII CCGG 4 cut(s) 295, 949, 1726, 1843
HphI GGTGA 5 cut(s) 230, 525, 989, 1381, 1657
Hpy166II GTNNAC 7 cut(s) 361, 432, 470, 553, 1463, 1509, 1585
Hpy188I TCNGA 6 cut(s) 124, 616, 741, 997, 1300, 1815
Hpy8I GTNNAC 7 cut(s) 361, 432, 470, 553, 1463, 1509, 1585
Hpy99I CGWCG 1 cut(s) 1793
HpyAV CCTTC 6 cut(s) 131, 344, 469, 706, 1493, 1872
HpyCH4III ACNGT 3 cut(s) 783, 824, 977
HpyCH4IV ACGT 3 cut(s) 256, 357, 916
HpyF10VI GCNNNNNNNGC 5 cut(s) 1082, 1215, 1511, 1703, 1712
HpyF3I CTNAG 6 cut(s) 174, 426, 855, 1164, 1299, 1438
HpySE526I ACGT 3 cut(s) 256, 357, 916
Hsp92II CATG 5 cut(s) 199, 396, 941, 1106, 1268
Kpn2I TCCGGA 1 cut(s) 1842
KroI GCCGGC 1 cut(s) 948
KroNI GCCGGC 1 cut(s) 950
KspAI GTTAAC 1 cut(s) 1585
Kzo9I GATC 5 cut(s) 103, 116, 609, 1231, 1826
LmnI GCTCC 1 cut(s) 1864
Lsp1109I GCAGC 3 cut(s) 1234, 1719, 1868
LweI GCATC 7 cut(s) 324, 396, 661, 970, 992, 1087, 1764
MabI ACCWGGT 1 cut(s) 585
MaeI CTAG 3 cut(s) 537, 1007, 1316
MaeII ACGT 3 cut(s) 256, 357, 916
MaeIII GTNAC 6 cut(s) 252, 353, 715, 731, 1105, 1870
MalI GATC 5 cut(s) 105, 118, 611, 1233, 1828
MbiI CCGCTC 2 cut(s) 229, 1455
MboI GATC 5 cut(s) 103, 116, 609, 1231, 1826
MflI RGATCY 1 cut(s) 1826
MhlI GDGCHC 2 cut(s) 555, 1496
MlsI TGGCCA 1 cut(s) 526
MluCI AATT 8 cut(s) 132, 184, 269, 450, 793, 1248, 1269, 1564
MluNI TGGCCA 1 cut(s) 526
MlyI GAGTC 2 cut(s) 1442, 1825
MmeI TCCRAC 1 cut(s) 464
Mox20I TGGCCA 1 cut(s) 526
Mph1103I ATGCAT 1 cut(s) 985
MroI TCCGGA 1 cut(s) 1842
MroNI GCCGGC 1 cut(s) 948
MscI TGGCCA 1 cut(s) 526
MseI TTAA 8 cut(s) 272, 447, 642, 861, 971, 1011, 1173, 1584
Msp20I TGGCCA 1 cut(s) 526
MspA1I CMGCKG 1 cut(s) 1706
MspI CCGG 4 cut(s) 295, 949, 1726, 1843
MspR9I CCNGG 2 cut(s) 296, 587
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 5 cut(s) 1082, 1215, 1511, 1703, 1712
NaeI GCCGGC 1 cut(s) 950
NciI CCSGG 1 cut(s) 296
NdeII GATC 5 cut(s) 103, 116, 609, 1231, 1826
NgoMIV GCCGGC 1 cut(s) 948
NlaIII CATG 5 cut(s) 199, 396, 941, 1106, 1268
NmeAIII GCCGAG 1 cut(s) 1741
NmuCI GTSAC 1 cut(s) 252
NsiI ATGCAT 1 cut(s) 985
NspI RCATGY 3 cut(s) 199, 1106, 1268
PagI TCATGA 1 cut(s) 937
PciI ACATGT 3 cut(s) 195, 1102, 1264
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 950
PfeI GAWTC 2 cut(s) 517, 941
PflMI CCANNNNNTGG 1 cut(s) 1382
PkrI GCNGC 4 cut(s) 1224, 1705, 1734, 1858
PleI GAGTC 2 cut(s) 1441, 1824
PpsI GAGTC 2 cut(s) 1441, 1824
Ppu21I YACGTR 2 cut(s) 358, 917
PscI ACATGT 3 cut(s) 195, 1102, 1264
PsiI TTATAA 1 cut(s) 791
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspPI GGNCC 2 cut(s) 365, 896
PstI CTGCAG 1 cut(s) 1477
PsuI RGATCY 1 cut(s) 1826
RsaI GTAC 2 cut(s) 572, 1602
RsaNI GTAC 2 cut(s) 571, 1601
SaqAI TTAA 8 cut(s) 272, 447, 642, 861, 971, 1011, 1173, 1584
SatI GCNGC 4 cut(s) 1223, 1704, 1733, 1857
Sau3AI GATC 5 cut(s) 103, 116, 609, 1231, 1826
Sau96I GGNCC 2 cut(s) 365, 896
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 2 cut(s) 1442, 1825
ScrFI CCNGG 2 cut(s) 296, 587
SduI GDGCHC 2 cut(s) 555, 1496
SexAI ACCWGGT 1 cut(s) 585
SfaNI GCATC 7 cut(s) 324, 396, 661, 970, 992, 1087, 1764
SfcI CTRYAG 3 cut(s) 369, 501, 1473
SmlI CTYRAG 3 cut(s) 802, 1226, 1456
SmoI CTYRAG 3 cut(s) 802, 1226, 1456
SnaBI TACGTA 1 cut(s) 358
Sse9I AATT 8 cut(s) 132, 184, 269, 450, 793, 1248, 1269, 1564
SsiI CCGC 4 cut(s) 229, 1453, 1704, 1764
SspMI CTAG 3 cut(s) 537, 1007, 1316
StyD4I CCNGG 2 cut(s) 294, 585
StyI CCWWGG 4 cut(s) 319, 536, 1520, 1750
TaaI ACNGT 3 cut(s) 783, 824, 977
TaiI ACGT 3 cut(s) 259, 360, 919
TasI AATT 8 cut(s) 132, 184, 269, 450, 793, 1248, 1269, 1564
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 1706
TfiI GAWTC 2 cut(s) 517, 941
Tru1I TTAA 8 cut(s) 272, 447, 642, 861, 971, 1011, 1173, 1584
Tru9I TTAA 8 cut(s) 272, 447, 642, 861, 971, 1011, 1173, 1584
TscAI CASTG 3 cut(s) 57, 1501, 1881
TseFI GTSAC 1 cut(s) 252
TseI GCWGC 3 cut(s) 1222, 1732, 1856
Tsp45I GTSAC 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 3 cut(s) 57, 1501, 1881
Van91I CCANNNNNTGG 1 cut(s) 1382
VneI GTGCAC 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 98
XapI RAATTY 4 cut(s) 184, 450, 793, 1248
XceI RCATGY 3 cut(s) 199, 1106, 1268
XmaJI CCTAGG 1 cut(s) 536
XmiI GTMKAC 2 cut(s) 360, 431
XspI CTAG 3 cut(s) 537, 1007, 1316
ZrmI AGTACT 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.