pycom12g03790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001246
Physical Location & Seq
Forward (+)
3671077 .. 3671902
826 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03790.1

Sequence Viewer

Length: 618 bp
ATGGTGTCAACAACAAATGGAAAGAGAAATGTTTTGATCAGTTCTGAAGTGGAACAAGCTCTAGGAACATTAGAAAAGGTAATTTATAAGGTTCAGCAAAATAGATTGAATGCTCAAATGCGGTCCTCTTCTGGCTTCACCAATGGAATCCCGCCAAAGGAAAATAATGTAGGTAACCCAAAATCTTTAGAAGGTGGAGTTTGTGGAAGTGGTGAACTTGTTCCTGAAGCATCTAAAGAAGAGGTTGTCAAGACGACTCAGCCCGAGTCCGCGAGGAATAGCTCTGTCATTCACAACTTAAGCAATGCAGGTTCGAATTCCTTGTCGAAGGATGTTAACCTTAACAGAGTACTACCTACTTCCCTGGAGCAGGAACTTTCGGTTTCTCATGACAGTAACCAGGTTGCGTTGCTTTCCTTCAAGGACGGAACTACAGAGACACCTGCTGTGGATCATATTATGCATCGTTCCGACCGCATGAACTCCGAGATCAACGGTGATCAAGAAAGTCGCCCTAGTAGAACAAAGAAGTCGAGGCAGCAAAAAGCGCTTCGGTTCTGTTGCTTCAGCATCAGTGAAAGACAGATTTTTAAGAGGTGGGAAGAGGCTGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.63

Weight (kDa)

7.74

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AarI CACCTGC 1 cut(s) 451
Acc36I ACCTGC 2 cut(s) 299, 451
AccII CGCG 1 cut(s) 272
AciI CCGC 4 cut(s) 121, 152, 270, 475
AclWI GGATC 1 cut(s) 459
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 3 cut(s) 66, 246, 550
AfaI GTAC 1 cut(s) 351
AfeI AGCGCT 1 cut(s) 549
AfiI CCNNNNNNNGG 2 cut(s) 157, 370
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 2 cut(s) 109, 421
AjnI CCWGG 2 cut(s) 363, 399
AluBI AGCT 2 cut(s) 59, 282
AluI AGCT 2 cut(s) 59, 282
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 459
Ama87I CYCGRG 1 cut(s) 263
Aor51HI AGCGCT 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 1 cut(s) 316
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
Asp700I GAANNNNTTC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 3 cut(s) 130, 224, 509
AsuII TTCGAA 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 550
BciT130I CCWGG 2 cut(s) 365, 401
BclI TGATCA 2 cut(s) 36, 499
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 2 cut(s) 62, 516
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 551
BfrI CTTAAG 1 cut(s) 298
BfuAI ACCTGC 2 cut(s) 299, 451
BisI GCNGC 1 cut(s) 539
BlsI GCNGC 1 cut(s) 540
BmcAI AGTACT 1 cut(s) 351
Bme1390I CCNGG 2 cut(s) 365, 401
Bme18I GGWCC 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 365, 401
BmsI GCATC 3 cut(s) 239, 472, 579
BpmI CTGGAG 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 370
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 365, 401
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 157, 370
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 550
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 475
BsiEI CGRYCG 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 157, 370
BsmAI GTCTC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 314
Bsp143I GATC 4 cut(s) 36, 451, 489, 499
BspACI CCGC 4 cut(s) 121, 152, 270, 475
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 1 cut(s) 272
BspHI TCATGA 1 cut(s) 388
BspMI ACCTGC 2 cut(s) 299, 451
BspPI GGATC 1 cut(s) 459
BspT104I TTCGAA 1 cut(s) 314
BspTI CTTAAG 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 4 cut(s) 36, 451, 489, 499
Bst2UI CCWGG 2 cut(s) 365, 401
Bst4CI ACNGT 3 cut(s) 395, 497, 615
Bst6I CTCTTC 3 cut(s) 133, 234, 597
BstAFI CTTAAG 1 cut(s) 298
BstBI TTCGAA 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 551
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 4 cut(s) 39, 454, 492, 502
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 4 cut(s) 36, 451, 489, 499
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 1 cut(s) 547
BstNI CCWGG 2 cut(s) 365, 401
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 363, 399
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 550
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 580
BveI ACCTGC 2 cut(s) 299, 451
CciI TCATGA 1 cut(s) 388
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 123
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 350
CviAII CATG 2 cut(s) 389, 478
CviJI RGCY 5 cut(s) 59, 135, 262, 282, 608
CviKI_1 RGCY 5 cut(s) 59, 135, 262, 282, 608
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 1 cut(s) 258
DpnI GATC 4 cut(s) 38, 453, 491, 501
DpnII GATC 4 cut(s) 36, 451, 489, 499
Eam1104I CTCTTC 3 cut(s) 133, 234, 597
EarI CTCTTC 3 cut(s) 133, 234, 597
Eco47I GGWCC 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 549
Eco57I CTGAAG 3 cut(s) 66, 246, 550
Eco88I CYCGRG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 173
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 363, 399
EcoT22I ATGCAT 1 cut(s) 465
FaeI CATG 2 cut(s) 392, 481
FaiI YATR 5 cut(s) 87, 390, 456, 461, 479
FatI CATG 2 cut(s) 388, 477
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 2 cut(s) 36, 499
Fnu4HI GCNGC 1 cut(s) 539
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 539
FspBI CTAG 2 cut(s) 62, 516
GlaI GCGC 1 cut(s) 549
GluI GCNGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 1 cut(s) 551
HhaI GCGC 1 cut(s) 550
Hin1II CATG 2 cut(s) 392, 481
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HincII GTYRAC 2 cut(s) 9, 337
HindII GTYRAC 2 cut(s) 9, 337
HinfI GANTC 3 cut(s) 147, 256, 266
HpaI GTTAAC 1 cut(s) 337
HphI GGTGA 3 cut(s) 130, 224, 509
Hpy166II GTNNAC 3 cut(s) 9, 215, 337
Hpy188I TCNGA 3 cut(s) 46, 472, 487
Hpy188III TCNNGA 4 cut(s) 224, 250, 389, 503
Hpy8I GTNNAC 3 cut(s) 9, 215, 337
HpyAV CCTTC 3 cut(s) 185, 322, 427
HpyCH4III ACNGT 3 cut(s) 395, 497, 615
HpyCH4V TGCA 2 cut(s) 308, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 547
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 2 cut(s) 392, 481
HspAI GCGC 1 cut(s) 548
Ksp22I TGATCA 2 cut(s) 36, 499
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 36, 451, 489, 499
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 9 cut(s) 117, 237, 294, 350, 356, 377, 386, 413, 456
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 3 cut(s) 239, 472, 579
MabI ACCWGGT 1 cut(s) 399
MaeI CTAG 2 cut(s) 62, 516
MaeIII GTNAC 2 cut(s) 173, 395
MalI GATC 4 cut(s) 38, 453, 491, 501
MboI GATC 4 cut(s) 36, 451, 489, 499
MboII GAAGA 3 cut(s) 120, 251, 614
MluCI AATT 2 cut(s) 81, 316
MlyI GAGTC 2 cut(s) 250, 275
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 6 cut(s) 136, 235, 267, 528, 588, 598
Mph1103I ATGCAT 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 4 cut(s) 299, 336, 342, 591
MspCI CTTAAG 1 cut(s) 298
MspR9I CCNGG 2 cut(s) 365, 401
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 2 cut(s) 365, 401
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 547
NdeII GATC 4 cut(s) 36, 451, 489, 499
NlaIII CATG 2 cut(s) 392, 481
NsiI ATGCAT 1 cut(s) 465
NspV TTCGAA 1 cut(s) 314
PagI TCATGA 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 451
PctI GAATGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 540
PleI GAGTC 2 cut(s) 250, 274
PpsI GAGTC 2 cut(s) 250, 274
PsiI TTATAA 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 363, 399
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 2 cut(s) 363, 399
PspPI GGNCC 1 cut(s) 123
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 4 cut(s) 299, 336, 342, 591
SatI GCNGC 1 cut(s) 539
Sau3AI GATC 4 cut(s) 36, 451, 489, 499
Sau96I GGNCC 1 cut(s) 123
ScaI AGTACT 1 cut(s) 351
SchI GAGTC 2 cut(s) 250, 275
ScrFI CCNGG 2 cut(s) 365, 401
SexAI ACCWGGT 1 cut(s) 399
SfaNI GCATC 3 cut(s) 239, 472, 579
SfcI CTRYAG 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 314
SinI GGWCC 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 2 cut(s) 81, 316
SsiI CCGC 4 cut(s) 121, 152, 270, 475
SspMI CTAG 2 cut(s) 62, 516
StyD4I CCNGG 2 cut(s) 363, 399
TaaI ACNGT 3 cut(s) 395, 497, 615
TaqI TCGA 3 cut(s) 314, 326, 533
TasI AATT 2 cut(s) 81, 316
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 4 cut(s) 299, 336, 342, 591
Tru9I TTAA 4 cut(s) 299, 336, 342, 591
TscAI CASTG 1 cut(s) 580
TseI GCWGC 1 cut(s) 538
TspDTI ATGAA 1 cut(s) 494
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 580
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 123
XagI CCTNNNNNAGG 1 cut(s) 368
XapI RAATTY 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 2 cut(s) 62, 516
ZrmI AGTACT 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.