Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001246

Physical Location & Seq

Genomic Coordinates Forward (+)

22157086 .. 22159253

Gene Structure 2168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG233100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAGAAAAAGAGAAAAATCACTCAATACAGAGAGAGGCTGGACAAGACACTGACATCTCCTAATCTAACAAATAAGGAGGCTCTAAAAGTCCTTGTCAAGGATCAGCTTTTGCGTTCTTCAGAAAATGAAATTGAAGGTTGTAATGCAAATGTGATAGAAGAAAGGACAGCTGAGGTGTCAAATTTGCTTGACATGTTGAGGAGTGTTTCAGTTGGTGATGACGAGCGGTTGAAAACTTGTGATACCCCATCACGTCCTGAATGGAAATTAAAACAGGACAATGAGGAGTTCCGGGTTATGTATCGTGAGGGCATCCAAGGTTCTCCATTTCATACATTACTTGTTGAAGGTTACATAGACGGGCCTGTAGATGTCTGTTTGTGCATCTCATGTGAGGCAGACCTTTACAAGAAATGGTGGCCTCAGTCTACCATTCCAACTTTTAAAATTCTCTATGGGAAGTGTTTACAGAATGTCGGGATTGGCGAACAGATATCTGTAGTGAGGATGAAGATTCCGTGGCCACTTTCACCTAGGGAAGCTGTTGTGCACTATTTTGTGTTTGAGTACTATGAAGATGACCTGGTTGTTGTTCTCTTGAACACGATCTCTGATTTTGGAGGCATTGATGGTGGCCTTAAAAATGAGGCAACTGATGGAGTAAAGGATGCAGTTAGGATAGATGTAGTTGGTGGCTTTGCTTTGCAGAAGGTGACCGATGATAGAAGTTACTTTCGGACAATAGCAAATATGGATATAAAGATGGATTTTGTCCCACCATCCCTTATAAATTTTGTCTCAAGACAGCTCATTGGCAACGGTTTCAGACTGTATCAAAAGGTTGTATGTTTACTTTGTAACATAGGAAGATGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

33.38

Weight (kDa)

5.49

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440
fragaria_vesca	FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770
malus_domestica	MD12G1043900.v1.1 MD14G1042900.v1.1
prunus_persica	Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1
pyrus_communis	pycom12g03770 pycom12g03780 pycom12g03790 pycom14g03640 pycom14g03650
rosa_chinensis	RchiOBHm_Chr3g0476671
rosa_laevigata	RLG00000001975 RLG00000023756
rosa_multiflora	Rmu_co8489431.1_g000001 Rmu_sc0008241.1_g000019 Rmu_sc0027136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235830 Rroxscaffold_6G00405100
rosa_rugosa	Rorug03G0156400 Rorug03G0156500 Rorug03G0156600
rosa_samantha	Rh3AG206800 Rh3BG239300 Rh3CG233200 Rh3DG233100 Rh3DG233200
rosa_wichuraiana	Rw3G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AccBSI	CCGCTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	431
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	524
AcsI	RAATTY	3 cut(s)	184, 450, 793
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	137, 235, 350, 604
AjiI	CACGTC	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	5 cut(s)	109, 173, 545, 811, 879
AluI	AGCT	5 cut(s)	109, 173, 545, 811, 879
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	805
Alw44I	GTGCAC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	4 cut(s)	365, 422, 524, 637
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	876
ApoI	RAATTY	3 cut(s)	184, 450, 793
AspA2I	CCTAGG	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	230, 525, 727
AvrII	CCTAGG	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	174
BccI	CCATC	5 cut(s)	259, 626, 653, 760, 790
BciT130I	CCWGG	1 cut(s)	587
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	805
BfaI	CTAG	2 cut(s)	537, 880
BfmI	CTRYAG	2 cut(s)	369, 501
BisI	GCNGC	1 cut(s)	877
BlnI	CCTAGG	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	878
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	2 cut(s)	296, 587
BmgBI	CACGTC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	2 cut(s)	296, 587
BmsI	GCATC	4 cut(s)	324, 396, 661, 863
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	787
BpuMI	CCSGG	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	319, 521, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	3 cut(s)	319, 521, 536
BseGI	GGATG	4 cut(s)	315, 516, 676, 782
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	165, 440
BseRI	GAGGAG	2 cut(s)	217, 302
BseSI	GKGCMC	1 cut(s)	555
BshFI	GGCC	4 cut(s)	367, 424, 526, 639
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	805
BsmFI	GGGAC	1 cut(s)	761
BsnI	GGCC	4 cut(s)	367, 424, 526, 639
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	103, 609
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	4 cut(s)	367, 424, 526, 639
BspCNI	CTCAG	2 cut(s)	166, 439
BspPI	GGATC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	319, 521, 536
BssMI	GATC	2 cut(s)	103, 609
BssT1I	CCWWGG	2 cut(s)	319, 536
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	824, 834
BstDEI	CTNAG	2 cut(s)	174, 426
BstDSI	CCRYGG	1 cut(s)	521
BstEII	GGTNACC	1 cut(s)	715
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	4 cut(s)	315, 516, 676, 782
BstKTI	GATC	2 cut(s)	106, 612
BstMAI	GTCTC	1 cut(s)	805
BstMBI	GATC	2 cut(s)	103, 609
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	2 cut(s)	294, 585
BstSFI	CTRYAG	2 cut(s)	369, 501
BstSLI	GKGCMC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	367, 424, 526, 639
BtgI	CCRYGG	1 cut(s)	521
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	4 cut(s)	315, 516, 676, 782
BtsIMutI	CAGTG	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	365
CsiI	ACCWGGT	1 cut(s)	585
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	2 cut(s)	196, 393
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	174, 426
DpnI	GATC	2 cut(s)	105, 611
DpnII	GATC	2 cut(s)	103, 609
DraI	TTTAAA	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	524
Eco130I	CCWWGG	2 cut(s)	319, 536
Eco32I	GATATC	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	715
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	2 cut(s)	319, 536
ErhI	CCWWGG	2 cut(s)	319, 536
FaeI	CATG	2 cut(s)	199, 396
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	2 cut(s)	195, 392
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	1 cut(s)	877
FokI	GGATG	4 cut(s)	302, 523, 683, 769
Fsp4HI	GCNGC	1 cut(s)	877
FspBI	CTAG	2 cut(s)	537, 880
GluI	GCNGC	1 cut(s)	877
HaeIII	GGCC	4 cut(s)	367, 424, 526, 639
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	2 cut(s)	199, 396
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	3 cut(s)	230, 525, 727
Hpy166II	GTNNAC	4 cut(s)	432, 470, 553, 854
Hpy188I	TCNGA	4 cut(s)	124, 616, 741, 830
Hpy188III	TCNNGA	5 cut(s)	260, 308, 481, 601, 804
Hpy8I	GTNNAC	4 cut(s)	432, 470, 553, 854
HpyAV	CCTTC	3 cut(s)	131, 344, 706
HpyCH4III	ACNGT	2 cut(s)	824, 834
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	6 cut(s)	149, 387, 553, 674, 709, 876
HpyF3I	CTNAG	2 cut(s)	174, 426
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	199, 396
Kzo9I	GATC	2 cut(s)	103, 609
LpnPI	CCDG	7 cut(s)	26, 263, 273, 308, 381, 572, 599
LweI	GCATC	4 cut(s)	324, 396, 661, 863
MabI	ACCWGGT	1 cut(s)	585
MaeI	CTAG	2 cut(s)	537, 880
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	4 cut(s)	353, 715, 731, 860
MalI	GATC	2 cut(s)	105, 611
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	2 cut(s)	103, 609
MboII	GAAGA	5 cut(s)	111, 173, 526, 590, 882
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	526
MluCI	AATT	5 cut(s)	132, 184, 269, 450, 793
MluNI	TGGCCA	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	464
Mox20I	TGGCCA	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	526
MseI	TTAA	3 cut(s)	272, 447, 642
Msp20I	TGGCCA	1 cut(s)	526
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	2 cut(s)	296, 587
MvaI	CCWGG	1 cut(s)	587
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	103, 609
NlaIII	CATG	2 cut(s)	199, 396
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	1 cut(s)	199
PciI	ACATGT	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	878
PscI	ACATGT	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	585
PspEI	GGTNACC	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SaqAI	TTAA	3 cut(s)	272, 447, 642
SatI	GCNGC	1 cut(s)	877
Sau3AI	GATC	2 cut(s)	103, 609
Sau96I	GGNCC	1 cut(s)	365
ScaI	AGTACT	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	296, 587
SduI	GDGCHC	1 cut(s)	555
SexAI	ACCWGGT	1 cut(s)	585
SfaNI	GCATC	4 cut(s)	324, 396, 661, 863
SfcI	CTRYAG	2 cut(s)	369, 501
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
Sse9I	AATT	5 cut(s)	132, 184, 269, 450, 793
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	2 cut(s)	537, 880
StyD4I	CCNGG	2 cut(s)	294, 585
StyI	CCWWGG	2 cut(s)	319, 536
TaaI	ACNGT	2 cut(s)	824, 834
TaiI	ACGT	1 cut(s)	259
TaqII	GACCGA	1 cut(s)	734
TasI	AATT	5 cut(s)	132, 184, 269, 450, 793
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	3 cut(s)	272, 447, 642
Tru9I	TTAA	3 cut(s)	272, 447, 642
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	1 cut(s)	876
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	4 cut(s)	144, 323, 527, 591
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	3 cut(s)	184, 450, 793
XceI	RCATGY	1 cut(s)	199
XmaJI	CCTAGG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	2 cut(s)	537, 880
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.