RLG00000001975

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001246
Physical Location & Seq
Reverse (-)
23852091 .. 23856379
4289 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001975

Sequence Viewer

Length: 1764 bp
ATGGAGAAAAAGAGAAAAATCACTCAATACAGAGAGAGGCTGGACAAGACACTGACATCTCCTAATCTAACAAATAAGGAGGCTCTAAAAGTCCTTGTCAAGGATCAGCTTTTGCGTTCTTCAGAAAATGAAATTGAAGGTTGTAATGCAAATGTGATGGAAGAAAGGACGGCTGAGGTGTCAAATCTGCTTGACATGTTGAGGAGTGTTTCAGTTGGTGATGACAAGGGGTTGAAAACTTGTGATACCCCATCACGTCCTGAATGGAAATTAAAACAGGACAATGAGGAGTTCCGGGTTATGTATCGTGAGGGAATCCAAGGTTCTCCATTTCATACATTACTTGTTGAAGGTTACATTGATGGGCCTGTAGATGTCTGTTTGTGCATCTCGTGTGAGGCAGACCTTTACAAGAAATGGTGGCCTCAGTCTAGCATTCCAACTTTCAAAATTCTCTCTGGGAAGTGTTTACAGAAGGTCGGGATTGGTGAACAGATATCTGTAGTGAGGATGAAGATTCCGTGGCCACTTTCACCTAGGGAAGCTGTTGTGCACTATTTTGTGTTTGAGTACTATGAAGATGACCTGATTGTTGTTCTCTTGAACACGATCTCGGATTTTGGAGGCATTGATGGTGGCCTTCAAAATGAGGCAACTGATGGAGTAAAGGATGCAGTTAGGATAGATGTAGTTGGTGGCTTTGCTTTGCAGAAGGTTACCGACGATAGAAGTTACATTCGGACAATAGCAAATATGGATATAAAGATGGATTTTGTCCCACCATCCCTTATAAATTTTGTCTCAAGACAGCTCATTGGCAATGGTTTCAGACTGTATCAAAAGGTAGTGTCTTCTAAGCTTAATCGTGATGAAGATTACAGCAAGGCATTGAGAGGCTCACTATACTCTCGCATACGTGAAGCTCTTTATTCACTTCATGAATCAAGCCGGCTTCTGGAGGGCAAAAAGTTAAACGGTGATGCATCCAATCTCTCTGAAGAAAATCTAGTTAAACATAAAATGAATGATTTGAAGTTGGTGGATATGAATGAGAAAGTTCATAATGAACACCTTGCAAGTGAAGCTACCCCAGATGATGCACATGTTACTGGAGGAAACACTCTTTGTGAGATTGAGGAGGTAGAGAGTGAAGAAAGCAAGACTGAGGAGATTAAAAGTGAAAAAAGCAAGATTAAGGAGTTAGAGGGAAAAGAAAGCAGGCAGCTTGAGGATCAAACATTCAAAAGAATTCCCGAAAGGGGACATGTAATTGGAAAGAGAAACGTGTTCATCAGTTCTGAGGTGGAAGCAGCTATAGGAACAATAGAAAAAGTCATTTTGAGGGTTAGGCACTATAGGTTCAGCGCTGAAATGCCATCCTCTGGTTTCACCAATGAAGTCTCACAAAAGGAAAATGATGGAGAACTTTTTTCTGCAGTACCTGAAAATGAGGGCACTGAGGGGGCGTTGACTGCACCTCCAAGGAATAGCAATGCCATTCAAAACATAAGTTATGCAGGCTCAAATTATTTGTCAAAGGAAGTTAACCATAACAGAATAGTACCTACTTCCCCATTGTGTTCCTCCCAAGATGGGATTGTTGAGATACCTGTTGTGGATAACATCGTTCATAGTACTAACCAATTTAGCTGCAAGACAAATGACACTCATCAAAGTAGTCACAGTAGAAGGAAGAAGTCAAGGTGGCAAAGAAGGCGTGGGTTCTGTTGCTTCAGCATCAGTTCAGGACAAATAGATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

588

Amino Acids

66.24

Weight (kDa)

5.85

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
AccB7I CCANNNNNTGG 1 cut(s) 1382
AclWI GGATC 2 cut(s) 111, 1239
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 3 cut(s) 450, 793, 1248
AcuI CTGAAG 3 cut(s) 105, 1017, 1717
AfaI GTAC 4 cut(s) 572, 1440, 1563, 1636
AfeI AGCGCT 1 cut(s) 1366
AfiI CCNNNNNNNGG 5 cut(s) 100, 955, 1259, 1382, 1593
AflIII ACRYGT 4 cut(s) 195, 1102, 1264, 1284
AgsI TTSAA 9 cut(s) 137, 235, 350, 448, 604, 644, 1033, 1243, 1502
AjiI CACGTC 1 cut(s) 257
AluBI AGCT 9 cut(s) 109, 545, 811, 859, 923, 1085, 1225, 1313, 1650
AluI AGCT 9 cut(s) 109, 545, 811, 859, 923, 1085, 1225, 1313, 1650
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 805, 1405
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 2 cut(s) 111, 1239
AlwNI CAGNNNCTG 1 cut(s) 1442
Aor51HI AGCGCT 1 cut(s) 1366
AoxI GGCC 4 cut(s) 365, 422, 524, 637
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 3 cut(s) 1222, 1310, 1650
ApoI RAATTY 3 cut(s) 450, 793, 1248
ArsI GACNNNNNNTTYG 2 cut(s) 1517, 1549
AspA2I CCTAGG 1 cut(s) 536
AspLEI GCGC 1 cut(s) 1367
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 5 cut(s) 230, 500, 525, 989, 1381
AvrII CCTAGG 1 cut(s) 536
BaeGI GKGCMC 2 cut(s) 555, 1457
BalI TGGCCA 1 cut(s) 526
BauI CACGAG 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 843
Bbv12I GWGCWC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 1234, 1322, 1637
BceAI ACGGC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 805, 1405
BfaI CTAG 3 cut(s) 432, 537, 1007
BfmI CTRYAG 5 cut(s) 369, 501, 1314, 1354, 1434
BfoI RGCGCY 1 cut(s) 1368
BisI GCNGC 3 cut(s) 1223, 1311, 1651
BlnI CCTAGG 1 cut(s) 536
BlsI GCNGC 3 cut(s) 1224, 1312, 1652
BmcAI AGTACT 2 cut(s) 572, 1636
Bme1390I CCNGG 1 cut(s) 296
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 6 cut(s) 396, 661, 970, 992, 1087, 1746
BpiI GAAGAC 1 cut(s) 843
BpmI CTGGAG 2 cut(s) 977, 1131
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 787, 1247
BpuMI CCSGG 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 917
BsaJI CCNNGG 4 cut(s) 319, 521, 536, 1481
BsaXI ACNNNNNCTCC 2 cut(s) 1462, 1492
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 955, 1259, 1382, 1593
Bse118I RCCGGY 1 cut(s) 948
Bse1I ACTGG 1 cut(s) 1114
Bse3DI GCAATG 2 cut(s) 826, 1498
BseDI CCNNGG 4 cut(s) 319, 521, 536, 1481
BseGI GGATG 5 cut(s) 516, 676, 782, 983, 1376
BseLI CCNNNNNNNGG 5 cut(s) 100, 955, 1259, 1382, 1593
BseMI GCAATG 2 cut(s) 826, 1498
BseMII CTCAG 5 cut(s) 165, 440, 1155, 1290, 1449
BseNI ACTGG 1 cut(s) 1114
BseRI GAGGAG 4 cut(s) 217, 302, 1151, 1181
BseSI GKGCMC 2 cut(s) 555, 1457
BseXI GCAGC 3 cut(s) 1234, 1322, 1637
BsgI GTGCAG 1 cut(s) 1458
BshFI GGCC 4 cut(s) 367, 424, 526, 639
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 2 cut(s) 295, 949
BslFI GGGAC 2 cut(s) 761, 1275
BslI CCNNNNNNNGG 5 cut(s) 100, 955, 1259, 1382, 1593
BsmAI GTCTC 2 cut(s) 805, 1405
BsmFI GGGAC 2 cut(s) 761, 1275
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 4 cut(s) 367, 424, 526, 639
Bsp1286I GDGCHC 2 cut(s) 555, 1457
Bsp143I GATC 3 cut(s) 103, 609, 1231
BspANI GGCC 4 cut(s) 367, 424, 526, 639
BspCNI CTCAG 5 cut(s) 166, 439, 1156, 1291, 1450
BspHI TCATGA 1 cut(s) 937
BspMAI CTGCAG 1 cut(s) 1438
BspPI GGATC 2 cut(s) 111, 1239
BsrDI GCAATG 2 cut(s) 826, 1498
BsrFI RCCGGY 1 cut(s) 948
BsrI ACTGG 1 cut(s) 1114
BssAI RCCGGY 1 cut(s) 948
BssECI CCNNGG 4 cut(s) 319, 521, 536, 1481
BssMI GATC 3 cut(s) 103, 609, 1231
BssSI CACGAG 1 cut(s) 391
BssT1I CCWWGG 3 cut(s) 319, 536, 1481
Bst2BI CACGAG 1 cut(s) 391
Bst4CI ACNGT 3 cut(s) 834, 977, 1685
BstBAI YACGTR 1 cut(s) 917
BstC8I GCNNGC 3 cut(s) 950, 1220, 1519
BstDEI CTNAG 6 cut(s) 174, 426, 855, 1164, 1299, 1458
BstDSI CCRYGG 1 cut(s) 521
BstEII GGTNACC 1 cut(s) 715
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 5 cut(s) 516, 676, 782, 983, 1376
BstH2I RGCGCY 1 cut(s) 1368
BstHHI GCGC 1 cut(s) 1367
BstKTI GATC 3 cut(s) 106, 612, 1234
BstMAI GTCTC 2 cut(s) 805, 1405
BstMBI GATC 3 cut(s) 103, 609, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 1082, 1472, 1714
BstNSI RCATGY 3 cut(s) 199, 1106, 1268
BstPI GGTNACC 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 5 cut(s) 369, 501, 1314, 1354, 1434
BstSLI GKGCMC 2 cut(s) 555, 1457
BstV1I GCAGC 3 cut(s) 1234, 1322, 1637
BstV2I GAAGAC 1 cut(s) 843
BsuRI GGCC 4 cut(s) 367, 424, 526, 639
BtgI CCRYGG 1 cut(s) 521
BtrI CACGTC 1 cut(s) 257
BtsCI GGATG 5 cut(s) 516, 676, 782, 983, 1376
BtsIMutI CAGTG 2 cut(s) 50, 1455
Cac8I GCNNGC 3 cut(s) 950, 1220, 1519
CaiI CAGNNNCTG 1 cut(s) 1442
CciI TCATGA 1 cut(s) 937
CfoI GCGC 1 cut(s) 1367
Cfr10I RCCGGY 1 cut(s) 948
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 4 cut(s) 571, 1439, 1562, 1635
CviAII CATG 4 cut(s) 196, 938, 1103, 1265
CviQI GTAC 4 cut(s) 571, 1439, 1562, 1635
DdeI CTNAG 6 cut(s) 174, 426, 855, 1164, 1299, 1458
DpnI GATC 3 cut(s) 105, 611, 1233
DpnII GATC 3 cut(s) 103, 609, 1231
EaeI YGGCCR 1 cut(s) 524
Eco130I CCWWGG 3 cut(s) 319, 536, 1481
Eco32I GATATC 1 cut(s) 498
Eco47III AGCGCT 1 cut(s) 1366
Eco57I CTGAAG 3 cut(s) 105, 1017, 1717
Eco91I GGTNACC 1 cut(s) 715
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 1248
EcoRV GATATC 1 cut(s) 498
EcoT14I CCWWGG 3 cut(s) 319, 536, 1481
EcoT22I ATGCAT 1 cut(s) 985
ErhI CCWWGG 3 cut(s) 319, 536, 1481
FaeI CATG 4 cut(s) 199, 941, 1106, 1268
FaqI GGGAC 2 cut(s) 761, 1275
FatI CATG 4 cut(s) 195, 937, 1102, 1264
Fnu4HI GCNGC 3 cut(s) 1223, 1311, 1651
FokI GGATG 5 cut(s) 523, 683, 769, 970, 1363
Fsp4HI GCNGC 3 cut(s) 1223, 1311, 1651
FspBI CTAG 3 cut(s) 432, 537, 1007
GlaI GCGC 1 cut(s) 1366
GluI GCNGC 3 cut(s) 1223, 1311, 1651
GsuI CTGGAG 2 cut(s) 977, 1131
HaeII RGCGCY 1 cut(s) 1368
HaeIII GGCC 4 cut(s) 367, 424, 526, 639
HapII CCGG 2 cut(s) 295, 949
HhaI GCGC 1 cut(s) 1367
Hin1II CATG 4 cut(s) 199, 941, 1106, 1268
Hin6I GCGC 1 cut(s) 1365
HinP1I GCGC 1 cut(s) 1365
HincII GTYRAC 2 cut(s) 1470, 1546
HindII GTYRAC 2 cut(s) 1470, 1546
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 4 cut(s) 315, 517, 941, 1757
HpaI GTTAAC 1 cut(s) 1546
HpaII CCGG 2 cut(s) 295, 949
HphI GGTGA 5 cut(s) 230, 500, 525, 989, 1381
Hpy166II GTNNAC 5 cut(s) 470, 491, 553, 1470, 1546
Hpy188I TCNGA 6 cut(s) 124, 616, 741, 830, 997, 1300
Hpy8I GTNNAC 5 cut(s) 470, 491, 553, 1470, 1546
Hpy99I CGWCG 1 cut(s) 725
HpyAV CCTTC 7 cut(s) 131, 344, 469, 650, 706, 1683, 1707
HpyCH4III ACNGT 3 cut(s) 834, 977, 1685
HpyCH4IV ACGT 3 cut(s) 256, 916, 1284
HpyF10VI GCNNNNNNNGC 3 cut(s) 1082, 1472, 1714
HpyF3I CTNAG 6 cut(s) 174, 426, 855, 1164, 1299, 1458
HpySE526I ACGT 3 cut(s) 256, 916, 1284
Hsp92II CATG 4 cut(s) 199, 941, 1106, 1268
HspAI GCGC 1 cut(s) 1365
KroI GCCGGC 1 cut(s) 948
KroNI GCCGGC 1 cut(s) 950
KspAI GTTAAC 1 cut(s) 1546
Kzo9I GATC 3 cut(s) 103, 609, 1231
Lsp1109I GCAGC 3 cut(s) 1234, 1322, 1637
LweI GCATC 6 cut(s) 396, 661, 970, 992, 1087, 1746
MaeI CTAG 3 cut(s) 432, 537, 1007
MaeII ACGT 3 cut(s) 256, 916, 1284
MaeIII GTNAC 5 cut(s) 353, 715, 731, 1105, 1679
MalI GATC 3 cut(s) 105, 611, 1233
MboI GATC 3 cut(s) 103, 609, 1231
MboII GAAGA 9 cut(s) 111, 173, 526, 590, 843, 884, 1010, 1163, 1705
MhlI GDGCHC 2 cut(s) 555, 1457
MlsI TGGCCA 1 cut(s) 526
MluCI AATT 8 cut(s) 132, 269, 450, 793, 1248, 1269, 1525, 1643
MluNI TGGCCA 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 464
Mox20I TGGCCA 1 cut(s) 526
Mph1103I ATGCAT 1 cut(s) 985
MroNI GCCGGC 1 cut(s) 948
MscI TGGCCA 1 cut(s) 526
MseI TTAA 7 cut(s) 272, 861, 971, 1011, 1173, 1194, 1545
Msp20I TGGCCA 1 cut(s) 526
MspI CCGG 2 cut(s) 295, 949
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 435
MwoI GCNNNNNNNGC 3 cut(s) 1082, 1472, 1714
NaeI GCCGGC 1 cut(s) 950
NciI CCSGG 1 cut(s) 296
NdeII GATC 3 cut(s) 103, 609, 1231
NgoMIV GCCGGC 1 cut(s) 948
NlaIII CATG 4 cut(s) 199, 941, 1106, 1268
NmuCI GTSAC 1 cut(s) 1679
NsiI ATGCAT 1 cut(s) 985
NspI RCATGY 3 cut(s) 199, 1106, 1268
PagI TCATGA 1 cut(s) 937
PciI ACATGT 3 cut(s) 195, 1102, 1264
PctI GAATGC 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 950
PfeI GAWTC 4 cut(s) 315, 517, 941, 1757
PflMI CCANNNNNTGG 1 cut(s) 1382
PkrI GCNGC 3 cut(s) 1224, 1312, 1652
Ppu21I YACGTR 1 cut(s) 917
PscI ACATGT 3 cut(s) 195, 1102, 1264
PsiI TTATAA 1 cut(s) 791
PspEI GGTNACC 1 cut(s) 715
PspPI GGNCC 1 cut(s) 365
PstI CTGCAG 1 cut(s) 1438
PstNI CAGNNNCTG 1 cut(s) 1442
RsaI GTAC 4 cut(s) 572, 1440, 1563, 1636
RsaNI GTAC 4 cut(s) 571, 1439, 1562, 1635
SaqAI TTAA 7 cut(s) 272, 861, 971, 1011, 1173, 1194, 1545
SatI GCNGC 3 cut(s) 1223, 1311, 1651
Sau3AI GATC 3 cut(s) 103, 609, 1231
Sau96I GGNCC 1 cut(s) 365
ScaI AGTACT 2 cut(s) 572, 1636
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 555, 1457
SfaNI GCATC 6 cut(s) 396, 661, 970, 992, 1087, 1746
SfcI CTRYAG 5 cut(s) 369, 501, 1314, 1354, 1434
SmlI CTYRAG 2 cut(s) 802, 1226
SmoI CTYRAG 2 cut(s) 802, 1226
Sse9I AATT 8 cut(s) 132, 269, 450, 793, 1248, 1269, 1525, 1643
SspMI CTAG 3 cut(s) 432, 537, 1007
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 3 cut(s) 319, 536, 1481
TaaI ACNGT 3 cut(s) 834, 977, 1685
TaiI ACGT 3 cut(s) 259, 919, 1287
TasI AATT 8 cut(s) 132, 269, 450, 793, 1248, 1269, 1525, 1643
TatI WGTACW 2 cut(s) 570, 1634
TfiI GAWTC 4 cut(s) 315, 517, 941, 1757
Tru1I TTAA 7 cut(s) 272, 861, 971, 1011, 1173, 1194, 1545
Tru9I TTAA 7 cut(s) 272, 861, 971, 1011, 1173, 1194, 1545
TscAI CASTG 2 cut(s) 57, 1462
TseFI GTSAC 1 cut(s) 1679
TseI GCWGC 3 cut(s) 1222, 1310, 1650
Tsp45I GTSAC 1 cut(s) 1679
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 2 cut(s) 57, 1462
Van91I CCANNNNNTGG 1 cut(s) 1382
VneI GTGCAC 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 98
XapI RAATTY 3 cut(s) 450, 793, 1248
XceI RCATGY 3 cut(s) 199, 1106, 1268
XmaJI CCTAGG 1 cut(s) 536
XspI CTAG 3 cut(s) 432, 537, 1007
ZrmI AGTACT 2 cut(s) 572, 1636
Zsp2I ATGCAT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.