Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001246

Physical Location & Seq

Genomic Coordinates Forward (+)

21097529 .. 21104092

Gene Structure 6564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G018820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAAGATTCCGTGGCCACTTTCACCTAGGGAAGCTGTTGTGCACTATTTTGTGTTTGAGTACTATGAAGATGACCTGGTTGTTGTTCTCTTGAACACGATCTCTGATTTTGGAGGCATTGATGGTGGCCTTAAAAATGAGGCAACTGATGGAGTAAAGGATGCAGTTAGGATAGATGTAGTTGGTGGCTTTGCTTTGCAGAAGGTTACTGATGATAGAAGTTACTTTCGGACAATAGCAAATATGGATATAAAGATGGATTTTGTCCCACCATCCCTTATAAATTTTGTCTCAAGACAGCTCATTGGCAACGGTTTCAGGCTGTATCAAAAGGTAGTGTCTTCTAAGCTTAATCGTGATGAAGATTACAGCAAGGCTTTGAGAGGCCCACTATACTCTCGCATACGTGAAGCTCTTTATTCACTTCATGAATCAAGCCGGCTTCTGGAGGGCAAAAAGTTAAACGGTGATGCATCCAATCTCTCTGAAGAAAATCTAGTTAAACATAAAATGAATGATTTGAAGTTGGTGGATATGAATGAGAAAGTTCATAATGAACACCTTGCAAGTGAAGCTACCCCAGATGATGCACATGTTACTGGAGGAAACACTCTTTGTGAGATTGAGGAGGTAGAGAGTGAAGAAAGCAAGACTGAGGAGATTAAAAATGAAAAAAGCAAGATTGAGGAGTTAGAGGGCAAAGAAAGCAGGCAGCTTGAGGATCAAACATTCAAAAGAATTCCCGAAAGGGGACATGTAATTGGAAAGAGAAACATTTTCATCAGTTCTGAGGTGGAAGAAGCTCTAGGAACAATAGAAAAAGTCATTTTGAGGGTTAGGCAATATAGGTTGAGTGCTGAAATGCCATCCTCTGGTTTCACCAATGAAGTCTCACGAAAGGAAAATGATGGAGGCAACCCAGAGTCCTTAGAAGATGAAGTCCGCTCAAGTGAACATTTTTCTGCAGTACCTAAAAATGAGGGCACTGAAGGGGCGTTGACTGCACCTCCAAGGAATAGCAATGCCGTTCAAAACATAAGTTATGCAGGCTCAAATTATTTGTCAAAGGAAGTTAACCATAACAGAATAGTACCTACTTCCCCATTGTGTTCCTCCCAAGATGGGATTGTTGAGATACCTGTTGTGGATAACATCGTGCATAGTACTAACCAAATTAGCTGCAAGACAAATGACACTCATCAAAGTAGTCACAGTAGAAGGAAGAAGTCACGGTGGCAAAGAAGGCGTGGGTTCTGTTGCTTCAGCATCAGTTCAGGACAAATAGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

48.35

Weight (kDa)

5.6

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440
fragaria_vesca	FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770
malus_domestica	MD12G1043900.v1.1 MD14G1042900.v1.1
prunus_persica	Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1
pyrus_communis	pycom12g03770 pycom12g03780 pycom12g03790 pycom14g03640 pycom14g03650
rosa_chinensis	RchiOBHm_Chr3g0476671
rosa_laevigata	RLG00000001975 RLG00000023756
rosa_multiflora	Rmu_co8489431.1_g000001 Rmu_sc0008241.1_g000019 Rmu_sc0027136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235830 Rroxscaffold_6G00405100
rosa_rugosa	Rorug03G0156400 Rorug03G0156500 Rorug03G0156600
rosa_samantha	Rh3AG206800 Rh3BG239300 Rh3CG233200 Rh3DG233100 Rh3DG233200
rosa_wichuraiana	Rw3G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccBSI	CCGCTC	1 cut(s)	945
AciI	CCGC	1 cut(s)	943
AclWI	GGATC	1 cut(s)	729
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	283, 738
AcuI	CTGAAG	3 cut(s)	507, 1008, 1246
AfaI	GTAC	4 cut(s)	62, 969, 1092, 1165
AfiI	CCNNNNNNNGG	4 cut(s)	445, 749, 872, 1122
AflIII	ACRYGT	2 cut(s)	592, 754
AgsI	TTSAA	4 cut(s)	94, 523, 733, 1031
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	8 cut(s)	35, 301, 349, 413, 575, 715, 803, 1179
AluI	AGCT	8 cut(s)	35, 301, 349, 413, 575, 715, 803, 1179
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	295, 895
Alw44I	GTGCAC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	729
AoxI	GGCC	3 cut(s)	14, 127, 385
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	712, 1179
ApoI	RAATTY	2 cut(s)	283, 738
ArsI	GACNNNNNNTTYG	2 cut(s)	1046, 1078
AspA2I	CCTAGG	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	3 cut(s)	15, 479, 871
AvrII	CCTAGG	1 cut(s)	26
BaeGI	GKGCMC	2 cut(s)	45, 986
BalI	TGGCCA	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	724, 1166
BccI	CCATC	7 cut(s)	116, 143, 250, 280, 874, 902, 1115
BceAI	ACGGC	1 cut(s)	1010
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	295, 895
BfaI	CTAG	3 cut(s)	27, 497, 806
BfmI	CTRYAG	1 cut(s)	963
BisI	GCNGC	2 cut(s)	713, 1180
BlnI	CCTAGG	1 cut(s)	26
BlsI	GCNGC	2 cut(s)	714, 1181
BmcAI	AGTACT	2 cut(s)	62, 1165
Bme1390I	CCNGG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	5 cut(s)	151, 460, 482, 577, 1275
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	2 cut(s)	467, 621
BpuEI	CTTGAG	3 cut(s)	277, 737, 931
BsaAI	YACGTR	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	11, 26, 1010
BsaXI	ACNNNNNCTCC	2 cut(s)	991, 1021
Bsc4I	CCNNNNNNNGG	4 cut(s)	445, 749, 872, 1122
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	1027
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	11, 26, 1010
BseGI	GGATG	4 cut(s)	166, 272, 473, 866
BseLI	CCNNNNNNNGG	4 cut(s)	445, 749, 872, 1122
BseMI	GCAATG	1 cut(s)	1027
BseMII	CTCAG	2 cut(s)	645, 780
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	3 cut(s)	641, 671, 701
BseSI	GKGCMC	2 cut(s)	45, 986
BseXI	GCAGC	2 cut(s)	724, 1166
BsgI	GTGCAG	1 cut(s)	987
BshFI	GGCC	3 cut(s)	16, 129, 387
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	2 cut(s)	251, 765
BslI	CCNNNNNNNGG	4 cut(s)	445, 749, 872, 1122
BsmAI	GTCTC	2 cut(s)	295, 895
BsmFI	GGGAC	2 cut(s)	251, 765
BsnI	GGCC	3 cut(s)	16, 129, 387
Bsp1286I	GDGCHC	2 cut(s)	45, 986
Bsp143I	GATC	2 cut(s)	99, 721
BspACI	CCGC	1 cut(s)	943
BspANI	GGCC	3 cut(s)	16, 129, 387
BspCNI	CTCAG	2 cut(s)	646, 781
BspHI	TCATGA	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	967
BspPI	GGATC	1 cut(s)	729
BsrBI	CCGCTC	1 cut(s)	945
BsrDI	GCAATG	1 cut(s)	1027
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	3 cut(s)	11, 26, 1010
BssMI	GATC	2 cut(s)	99, 721
BssT1I	CCWWGG	2 cut(s)	26, 1010
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	4 cut(s)	314, 467, 1214, 1233
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	440, 710, 1048
BstDEI	CTNAG	4 cut(s)	345, 654, 789, 928
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	4 cut(s)	166, 272, 473, 866
BstKTI	GATC	2 cut(s)	102, 724
BstMAI	GTCTC	2 cut(s)	295, 895
BstMBI	GATC	2 cut(s)	99, 721
BstMWI	GCNNNNNNNGC	4 cut(s)	572, 705, 1001, 1243
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	596, 758
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	2 cut(s)	45, 986
BstV1I	GCAGC	2 cut(s)	724, 1166
BstV2I	GAAGAC	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	16, 129, 387
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	4 cut(s)	166, 272, 473, 866
BtsIMutI	CAGTG	1 cut(s)	984
Cac8I	GCNNGC	3 cut(s)	440, 710, 1048
CciI	TCATGA	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	386
CsiI	ACCWGGT	1 cut(s)	75
Csp6I	GTAC	4 cut(s)	61, 968, 1091, 1164
CviAII	CATG	3 cut(s)	428, 593, 755
CviQI	GTAC	4 cut(s)	61, 968, 1091, 1164
DdeI	CTNAG	4 cut(s)	345, 654, 789, 928
DpnI	GATC	2 cut(s)	101, 723
DpnII	GATC	2 cut(s)	99, 721
EaeI	YGGCCR	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	26, 1010
Eco57I	CTGAAG	3 cut(s)	507, 1008, 1246
EcoRI	GAATTC	1 cut(s)	738
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	26, 1010
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	2 cut(s)	26, 1010
FaeI	CATG	3 cut(s)	431, 596, 758
FaqI	GGGAC	2 cut(s)	251, 765
FatI	CATG	3 cut(s)	427, 592, 754
Fnu4HI	GCNGC	2 cut(s)	713, 1180
FokI	GGATG	4 cut(s)	173, 259, 460, 853
Fsp4HI	GCNGC	2 cut(s)	713, 1180
FspBI	CTAG	3 cut(s)	27, 497, 806
GluI	GCNGC	2 cut(s)	713, 1180
GsuI	CTGGAG	2 cut(s)	467, 621
HaeIII	GGCC	3 cut(s)	16, 129, 387
HapII	CCGG	1 cut(s)	439
Hin1II	CATG	3 cut(s)	431, 596, 758
HincII	GTYRAC	2 cut(s)	999, 1075
HindII	GTYRAC	2 cut(s)	999, 1075
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	7, 431, 923, 1286
HpaI	GTTAAC	1 cut(s)	1075
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	3 cut(s)	15, 479, 871
Hpy166II	GTNNAC	4 cut(s)	43, 953, 999, 1075
Hpy188I	TCNGA	4 cut(s)	106, 231, 487, 790
Hpy188III	TCNNGA	8 cut(s)	91, 294, 356, 428, 446, 743, 894, 1275
Hpy8I	GTNNAC	4 cut(s)	43, 953, 999, 1075
HpyAV	CCTTC	4 cut(s)	196, 983, 1212, 1236
HpyCH4III	ACNGT	4 cut(s)	314, 467, 1214, 1233
HpyCH4IV	ACGT	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	572, 705, 1001, 1243
HpyF3I	CTNAG	4 cut(s)	345, 654, 789, 928
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	431, 596, 758
KroI	GCCGGC	1 cut(s)	438
KroNI	GCCGGC	1 cut(s)	440
KspAI	GTTAAC	1 cut(s)	1075
Kzo9I	GATC	2 cut(s)	99, 721
Lsp1109I	GCAGC	2 cut(s)	724, 1166
LweI	GCATC	5 cut(s)	151, 460, 482, 577, 1275
MabI	ACCWGGT	1 cut(s)	75
MaeI	CTAG	3 cut(s)	27, 497, 806
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	5 cut(s)	205, 221, 595, 1208, 1227
MalI	GATC	2 cut(s)	101, 723
MbiI	CCGCTC	1 cut(s)	945
MboI	GATC	2 cut(s)	99, 721
MboII	GAAGA	9 cut(s)	16, 80, 333, 374, 500, 653, 809, 944, 1234
MhlI	GDGCHC	2 cut(s)	45, 986
MlsI	TGGCCA	1 cut(s)	16
MluCI	AATT	5 cut(s)	283, 738, 759, 1054, 1173
MluNI	TGGCCA	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	932
Mox20I	TGGCCA	1 cut(s)	16
Mph1103I	ATGCAT	1 cut(s)	475
MroNI	GCCGGC	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	6 cut(s)	132, 351, 461, 501, 663, 1074
Msp20I	TGGCCA	1 cut(s)	16
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	572, 705, 1001, 1243
NaeI	GCCGGC	1 cut(s)	440
NdeII	GATC	2 cut(s)	99, 721
NgoMIV	GCCGGC	1 cut(s)	438
NlaIII	CATG	3 cut(s)	431, 596, 758
NmuCI	GTSAC	2 cut(s)	1208, 1227
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	2 cut(s)	596, 758
PagI	TCATGA	1 cut(s)	427
PciI	ACATGT	2 cut(s)	592, 754
PdiI	GCCGGC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	7, 431, 1286
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	2 cut(s)	714, 1181
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
Ppu21I	YACGTR	1 cut(s)	407
PscI	ACATGT	2 cut(s)	592, 754
PsiI	TTATAA	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	967
RsaI	GTAC	4 cut(s)	62, 969, 1092, 1165
RsaNI	GTAC	4 cut(s)	61, 968, 1091, 1164
SaqAI	TTAA	6 cut(s)	132, 351, 461, 501, 663, 1074
SatI	GCNGC	2 cut(s)	713, 1180
Sau3AI	GATC	2 cut(s)	99, 721
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	2 cut(s)	62, 1165
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	45, 986
SexAI	ACCWGGT	1 cut(s)	75
SfaNI	GCATC	5 cut(s)	151, 460, 482, 577, 1275
SfcI	CTRYAG	1 cut(s)	963
SmlI	CTYRAG	3 cut(s)	292, 716, 946
SmoI	CTYRAG	3 cut(s)	292, 716, 946
Sse9I	AATT	5 cut(s)	283, 738, 759, 1054, 1173
SsiI	CCGC	1 cut(s)	943
SspMI	CTAG	3 cut(s)	27, 497, 806
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	26, 1010
TaaI	ACNGT	4 cut(s)	314, 467, 1214, 1233
TaiI	ACGT	1 cut(s)	409
TasI	AATT	5 cut(s)	283, 738, 759, 1054, 1173
TatI	WGTACW	2 cut(s)	60, 1163
TfiI	GAWTC	3 cut(s)	7, 431, 1286
Tru1I	TTAA	6 cut(s)	132, 351, 461, 501, 663, 1074
Tru9I	TTAA	6 cut(s)	132, 351, 461, 501, 663, 1074
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	2 cut(s)	1208, 1227
TseI	GCWGC	2 cut(s)	712, 1179
Tsp45I	GTSAC	2 cut(s)	1208, 1227
TspRI	CASTG	1 cut(s)	991
Van91I	CCANNNNNTGG	1 cut(s)	872
VneI	GTGCAC	1 cut(s)	41
XapI	RAATTY	2 cut(s)	283, 738
XceI	RCATGY	2 cut(s)	596, 758
XmaJI	CCTAGG	1 cut(s)	26
XspI	CTAG	3 cut(s)	27, 497, 806
ZrmI	AGTACT	2 cut(s)	62, 1165
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.