Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001246

Physical Location & Seq

Genomic Coordinates Forward (+)

22159708 .. 22161375

Gene Structure 1668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG233200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCTTAATCGTGATGAAGATTACAGCAAGGCTTTGAGAGGCCCACTATACTCTCGCATACGTGAAGCTCTTTATTCACTTCATGAATCAAGCCGGCTTCTGGAGGGCAAAAAGTTAAACGGTGATGCATCCAATCTCTCTGAAGAAAATCTAGTTAAACATGAAATGAATGATTTGAAGTTGGTAGATATGAATGAGAAAGTTCATAATGAACACCTTGCAAGTGAAGCTACCCCAGATGATGCACATGTTACTGGAGGAAACACTCTTTGTGAGATTGAGGAGGTAGAGAGTGAAGAAAGCAAGACTGAGGAGATTAAAAATGAAAAAAGCAAGATTGAGGAGTTAGAGGGCAAAGAAAGCAGGCAGCTTGAGGATCAAACATTCAAAAGAATTCCCGAAAGGGGACATGTAATTGGAAAGAGAAACATGTTCATCAGTTCTGAGGTGGAAGAAGCTCTAGGAACAATAGAAAAAGTCATTTTGAGGGTTAGGCAATATAGGTTGAGTGCTGAAATGCCATCCTCTGGTTTCACCATTGAAGTCTCACGAAAGGAAAATGATGGAGGCAACCCAGAGTCCTTAGAAGATGAAGTCCGCTCAAGTGAACATTTTTCTGCAGTACCTAAAAATGAGGGCACTGAAGGGGCGTTGACTGCACCTCCAAGGAATAGCAATGCCATTCAAAACATAAGTTATGCAGGCTCAAATTATTTGTCAAAGGAAGTTAACCATAACAGAATAGTACCTACTTCCCCATTGTGTTCCTCCCAAGATGGGATTGTTGAGATACCTGTTGTGGATAACATCGCGCATAGTACTAACCAAATTAGCTGCAAGACAAATGACACTCATCAAAGTAGTCACAGTAGAAGGAAGAAGTCACGGTGGCAAAGAAGGCGTGGGTTCTGTTGCTTCAGCATCATTTCAGGACAAATAGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.45

Weight (kDa)

5.5

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440
fragaria_vesca	FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770
malus_domestica	MD12G1043900.v1.1 MD14G1042900.v1.1
prunus_persica	Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1
pyrus_communis	pycom12g03770 pycom12g03780 pycom12g03790 pycom14g03640 pycom14g03650
rosa_chinensis	RchiOBHm_Chr3g0476671
rosa_laevigata	RLG00000001975 RLG00000023756
rosa_multiflora	Rmu_co8489431.1_g000001 Rmu_sc0008241.1_g000019 Rmu_sc0027136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235830 Rroxscaffold_6G00405100
rosa_rugosa	Rorug03G0156400 Rorug03G0156500 Rorug03G0156600
rosa_samantha	Rh3AG206800 Rh3BG239300 Rh3CG233200 Rh3DG233100 Rh3DG233200
rosa_wichuraiana	Rw3G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	600
AccII	CGCG	1 cut(s)	812
AciI	CCGC	1 cut(s)	598
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	3 cut(s)	162, 663, 901
AfaI	GTAC	3 cut(s)	624, 747, 820
AfiI	CCNNNNNNNGG	4 cut(s)	100, 404, 527, 777
AflIII	ACRYGT	3 cut(s)	247, 409, 429
AgsI	TTSAA	4 cut(s)	178, 388, 542, 686
AluBI	AGCT	5 cut(s)	68, 230, 370, 458, 834
AluI	AGCT	5 cut(s)	68, 230, 370, 458, 834
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	367, 834
ApoI	RAATTY	1 cut(s)	393
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	134, 526
BaeGI	GKGCMC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	379, 821
BccI	CCATC	3 cut(s)	529, 557, 770
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	2 cut(s)	152, 461
BfmI	CTRYAG	1 cut(s)	618
BisI	GCNGC	2 cut(s)	368, 835
BlsI	GCNGC	2 cut(s)	369, 836
BmcAI	AGTACT	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	41
BmsI	GCATC	4 cut(s)	115, 137, 232, 930
BpmI	CTGGAG	2 cut(s)	122, 276
BpuEI	CTTGAG	2 cut(s)	392, 586
BsaAI	YACGTR	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	665
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 404, 527, 777
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	682
BseDI	CCNNGG	1 cut(s)	665
BseGI	GGATG	2 cut(s)	128, 521
BseLI	CCNNNNNNNGG	4 cut(s)	100, 404, 527, 777
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	2 cut(s)	300, 435
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	3 cut(s)	296, 326, 356
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	2 cut(s)	379, 821
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	4 cut(s)	100, 404, 527, 777
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	301, 436
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	682
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	665
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	122, 869, 888
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	95, 365, 703
BstDEI	CTNAG	3 cut(s)	309, 444, 583
BstF5I	GGATG	2 cut(s)	128, 521
BstFNI	CGCG	1 cut(s)	812
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 360, 656, 898
BstNSI	RCATGY	3 cut(s)	251, 413, 433
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	641
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	2 cut(s)	379, 821
BsuRI	GGCC	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	793
BtsCI	GGATG	2 cut(s)	128, 521
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	3 cut(s)	95, 365, 703
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	814
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	623, 746, 819
CviAII	CATG	5 cut(s)	83, 161, 248, 410, 430
CviQI	GTAC	3 cut(s)	623, 746, 819
DdeI	CTNAG	3 cut(s)	309, 444, 583
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	665
Eco57I	CTGAAG	3 cut(s)	162, 663, 901
EcoRI	GAATTC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	665
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	5 cut(s)	86, 164, 251, 413, 433
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	5 cut(s)	82, 160, 247, 409, 429
Fnu4HI	GCNGC	2 cut(s)	368, 835
FokI	GGATG	2 cut(s)	115, 508
Fsp4HI	GCNGC	2 cut(s)	368, 835
FspBI	CTAG	2 cut(s)	152, 461
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	2 cut(s)	368, 835
GsuI	CTGGAG	2 cut(s)	122, 276
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	94
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	5 cut(s)	86, 164, 251, 413, 433
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HincII	GTYRAC	2 cut(s)	654, 730
HindII	GTYRAC	2 cut(s)	654, 730
HinfI	GANTC	3 cut(s)	86, 578, 941
HpaI	GTTAAC	1 cut(s)	730
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	2 cut(s)	134, 526
Hpy166II	GTNNAC	3 cut(s)	608, 654, 730
Hpy188I	TCNGA	2 cut(s)	142, 445
Hpy188III	TCNNGA	6 cut(s)	11, 83, 101, 398, 549, 930
Hpy8I	GTNNAC	3 cut(s)	608, 654, 730
HpyAV	CCTTC	3 cut(s)	638, 867, 891
HpyCH4III	ACNGT	3 cut(s)	122, 869, 888
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	7 cut(s)	128, 221, 245, 620, 659, 701, 837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 360, 656, 898
HpyF3I	CTNAG	3 cut(s)	309, 444, 583
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	5 cut(s)	86, 164, 251, 413, 433
HspAI	GCGC	1 cut(s)	812
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
KspAI	GTTAAC	1 cut(s)	730
Kzo9I	GATC	1 cut(s)	376
Lsp1109I	GCAGC	2 cut(s)	379, 821
LweI	GCATC	4 cut(s)	115, 137, 232, 930
MaeI	CTAG	2 cut(s)	152, 461
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	3 cut(s)	250, 863, 882
MalI	GATC	1 cut(s)	378
MbiI	CCGCTC	1 cut(s)	600
MboI	GATC	1 cut(s)	376
MboII	GAAGA	6 cut(s)	29, 155, 308, 464, 599, 889
MhlI	GDGCHC	1 cut(s)	641
MluCI	AATT	4 cut(s)	393, 414, 709, 828
MlyI	GAGTC	1 cut(s)	587
Mph1103I	ATGCAT	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	93
MseI	TTAA	5 cut(s)	6, 116, 156, 318, 729
MspI	CCGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	4 cut(s)	227, 360, 656, 898
NaeI	GCCGGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	376
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	5 cut(s)	86, 164, 251, 413, 433
NmuCI	GTSAC	2 cut(s)	863, 882
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	3 cut(s)	251, 413, 433
PagI	TCATGA	1 cut(s)	82
PciI	ACATGT	3 cut(s)	247, 409, 429
PdiI	GCCGGC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	86, 941
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	369, 836
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
Ppu21I	YACGTR	1 cut(s)	62
PscI	ACATGT	3 cut(s)	247, 409, 429
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	622
RsaI	GTAC	3 cut(s)	624, 747, 820
RsaNI	GTAC	3 cut(s)	623, 746, 819
SaqAI	TTAA	5 cut(s)	6, 116, 156, 318, 729
SatI	GCNGC	2 cut(s)	368, 835
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	41
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	641
SfaNI	GCATC	4 cut(s)	115, 137, 232, 930
SfcI	CTRYAG	1 cut(s)	618
SmlI	CTYRAG	2 cut(s)	371, 601
SmoI	CTYRAG	2 cut(s)	371, 601
Sse9I	AATT	4 cut(s)	393, 414, 709, 828
SsiI	CCGC	1 cut(s)	598
SspMI	CTAG	2 cut(s)	152, 461
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	3 cut(s)	122, 869, 888
TaiI	ACGT	1 cut(s)	64
TasI	AATT	4 cut(s)	393, 414, 709, 828
TatI	WGTACW	1 cut(s)	818
TfiI	GAWTC	2 cut(s)	86, 941
Tru1I	TTAA	5 cut(s)	6, 116, 156, 318, 729
Tru9I	TTAA	5 cut(s)	6, 116, 156, 318, 729
TscAI	CASTG	1 cut(s)	646
TseFI	GTSAC	2 cut(s)	863, 882
TseI	GCWGC	2 cut(s)	367, 834
Tsp45I	GTSAC	2 cut(s)	863, 882
TspRI	CASTG	1 cut(s)	646
Van91I	CCANNNNNTGG	1 cut(s)	527
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	3 cut(s)	251, 413, 433
XspI	CTAG	2 cut(s)	152, 461
ZrmI	AGTACT	1 cut(s)	820
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.