pycom14g03650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0001246
Physical Location & Seq
Forward (+)
3067684 .. 3069156
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03650.3

Sequence Viewer

Length: 1038 bp
ATGGATTTTGTCCCGCCATCCCTTATAAATTTTATCTCGAGGCAGCTCATTGGCAGTGGTTTCAAACTCTATCAAAAGGTAGTGTCCTCTAAGATTAACTGCAACGAAGATTACAGTAAGGTCTTGAGTGGCCCGCTGTACTCTCGGATACGTGAAGCTCTTTATTCACATAATGAATCAAATGGGGCTTTGGAAGAAAACAAGCGACACAGTGACACATTCAGTCTCTCGGAAGAACATCTGGCAAAAGATAAGACGGATGAGAGTTTGGTAGGTGTGGATCAGAAAGTCGATAATGATGACCCTGCAATTGAAGCTGCTCCAGATGATGCACAAGTTAACCTTGCAAGTGAAGCTGCTTCAGAAGTTGCACAAGTTATAGGTGGAAGCTCATTTGGTGAGATTGAGGAGGTAGAGAGTGAAGAAAGCAGGCAGTTTGAGGTTCAAACACCCAACAGAGTTGCTGAAAGGGATCATGTAAATGGAAAGAGAAATGTTTTGATCAGTTCTGAAGTGGAACAAGCTCTCAGAACATTAGAAAAGGTAATTTATAAGGTTCGGCAAAATGGATCGAATGCTCAAATTCAGTCCTCTTCTGGCTTCACCAATGGAATCCTCCCAAAGGAAAATGATGTAGGTAACCCAAAATATTTAGAAGGTGGAGTGTGCGGAAGTGGTGAACATGTTCTTGAAGTATCTAAAGAAGTTGAGACGACTTTGCCCAAGTCCGCAGGGAATACGTCTGTCGTTCACAACTTAAGCAATGCAGGATCGAATTCCTTGTCGAAGGATGTTCACCCTAACAGAATAGTACCTACTTCCCTAGAGCAGGAATTTTCGATTTCCTATGACAGTAACCAGGTTGCATTGCGTTCCTCCAAAGACGGAACTACAGAGGCACCCGTTGTGGATCATATTATGCATCGAACAGACCAGATGAACTCCAATACAAACGGCGATCATGAATGTAGCCCTAGTAGAACAAAGAAGTCGAGGCAGCATGGAGCGCAACGGTTCTGTTGCTTCGGCATCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

37.74

Weight (kDa)

5.17

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 26, 552
AccB1I GGYRCC 1 cut(s) 898
AciI CCGC 4 cut(s) 14, 134, 669, 729
AclWI GGATC 5 cut(s) 288, 480, 577, 778, 918
AcsI RAATTY 4 cut(s) 28, 582, 775, 833
AcuI CTGAAG 2 cut(s) 345, 531
AfaI GTAC 2 cut(s) 140, 813
AfiI CCNNNNNNNGG 2 cut(s) 622, 829
AflII CTTAAG 1 cut(s) 757
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 4 cut(s) 64, 314, 446, 692
AjnI CCWGG 1 cut(s) 858
AluBI AGCT 6 cut(s) 46, 158, 317, 356, 390, 524
AluI AGCT 6 cut(s) 46, 158, 317, 356, 390, 524
Alw26I GTCTC 2 cut(s) 230, 704
AlwI GGATC 5 cut(s) 288, 480, 577, 778, 918
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 4 cut(s) 43, 317, 356, 997
ApoI RAATTY 4 cut(s) 28, 582, 775, 833
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
Asp700I GAANNNNTTC 1 cut(s) 684
AspLEI GCGC 1 cut(s) 1009
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 4 cut(s) 410, 595, 689, 788
AvaI CYCGRG 1 cut(s) 37
BanI GGYRCC 1 cut(s) 898
BbvI GCAGC 4 cut(s) 55, 304, 343, 1009
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 970
BciT130I CCWGG 1 cut(s) 860
BciVI GTATCC 1 cut(s) 141
BclI TGATCA 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 230, 704
BfaI CTAG 2 cut(s) 824, 975
BfmI CTRYAG 1 cut(s) 891
BfrI CTTAAG 1 cut(s) 757
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 4 cut(s) 44, 318, 357, 998
BlsI GCNGC 4 cut(s) 45, 319, 358, 999
Bme1390I CCNGG 1 cut(s) 860
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 900
BmrFI CCNGG 1 cut(s) 860
BmsI GCATC 2 cut(s) 319, 931
BpmI CTGGAG 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 145
BsaAI YACGTR 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 622, 829
Bse3DI GCAATG 2 cut(s) 769, 866
BseBI CCWGG 1 cut(s) 860
BseGI GGATG 3 cut(s) 17, 265, 796
BseLI CCNNNNNNNGG 2 cut(s) 622, 829
BseMI GCAATG 2 cut(s) 769, 866
BseMII CTCAG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 4 cut(s) 55, 304, 343, 1009
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 898
BsiHKCI CYCGRG 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 622, 829
BsmAI GTCTC 2 cut(s) 230, 704
BsmBI CGTCTC 1 cut(s) 704
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 7 cut(s) 280, 472, 501, 569, 770, 910, 958
BspACI CCGC 4 cut(s) 14, 134, 669, 729
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 540
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 1 cut(s) 900
BspPI GGATC 5 cut(s) 288, 480, 577, 778, 918
BspT107I GGYRCC 1 cut(s) 898
BspTI CTTAAG 1 cut(s) 757
BsrDI GCAATG 2 cut(s) 769, 866
BssMI GATC 7 cut(s) 280, 472, 501, 569, 770, 910, 958
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 4 cut(s) 116, 212, 854, 1014
Bst6I CTCTTC 1 cut(s) 598
BstAFI CTTAAG 1 cut(s) 757
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 134, 431
BstDEI CTNAG 2 cut(s) 90, 527
BstEII GGTNACC 1 cut(s) 638
BstENI CCTNNNNNAGG 2 cut(s) 620, 827
BstF5I GGATG 3 cut(s) 17, 265, 796
BstHHI GCGC 1 cut(s) 1009
BstKTI GATC 7 cut(s) 283, 475, 504, 572, 773, 913, 961
BstMAI GTCTC 2 cut(s) 230, 704
BstMBI GATC 7 cut(s) 280, 472, 501, 569, 770, 910, 958
BstMWI GCNNNNNNNGC 3 cut(s) 314, 353, 1006
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 1 cut(s) 686
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 858
BstSFI CTRYAG 1 cut(s) 891
BstV1I GCAGC 4 cut(s) 55, 304, 343, 1009
BsuI GTATCC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 3 cut(s) 17, 265, 796
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 61, 217
Cac8I GCNNGC 2 cut(s) 134, 431
CciI TCATGA 1 cut(s) 961
CfoI GCGC 1 cut(s) 1009
Cfr13I GGNCC 1 cut(s) 131
CsiI ACCWGGT 1 cut(s) 858
Csp6I GTAC 2 cut(s) 139, 812
CviAII CATG 4 cut(s) 476, 683, 962, 1001
CviQI GTAC 2 cut(s) 139, 812
DdeI CTNAG 2 cut(s) 90, 527
DpnI GATC 7 cut(s) 282, 474, 503, 571, 772, 912, 960
DpnII GATC 7 cut(s) 280, 472, 501, 569, 770, 910, 958
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 345, 531
Eco88I CYCGRG 1 cut(s) 37
Eco91I GGTNACC 1 cut(s) 638
EcoNI CCTNNNNNAGG 2 cut(s) 620, 827
EcoO65I GGTNACC 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 775
EcoRII CCWGG 1 cut(s) 858
EcoT22I ATGCAT 1 cut(s) 924
Esp3I CGTCTC 1 cut(s) 704
FaeI CATG 4 cut(s) 479, 686, 965, 1004
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 4 cut(s) 475, 682, 961, 1000
FauI CCCGC 2 cut(s) 21, 141
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 4 cut(s) 44, 318, 357, 998
FokI GGATG 3 cut(s) 4, 272, 803
Fsp4HI GCNGC 4 cut(s) 44, 318, 357, 998
FspBI CTAG 2 cut(s) 824, 975
GlaI GCGC 1 cut(s) 1008
GluI GCNGC 4 cut(s) 44, 318, 357, 998
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 132
HhaI GCGC 1 cut(s) 1009
Hin1II CATG 4 cut(s) 479, 686, 965, 1004
Hin6I GCGC 1 cut(s) 1007
HinP1I GCGC 1 cut(s) 1007
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 2 cut(s) 176, 612
HpaI GTTAAC 1 cut(s) 340
HphI GGTGA 4 cut(s) 410, 595, 689, 788
Hpy166II GTNNAC 4 cut(s) 340, 680, 751, 796
Hpy188I TCNGA 6 cut(s) 147, 232, 285, 364, 511, 530
Hpy188III TCNNGA 5 cut(s) 37, 124, 323, 689, 962
Hpy8I GTNNAC 4 cut(s) 340, 680, 751, 796
HpyAV CCTTC 2 cut(s) 650, 781
HpyCH4III ACNGT 4 cut(s) 116, 212, 854, 1014
HpyCH4IV ACGT 2 cut(s) 151, 740
HpyCH4V TGCA 8 cut(s) 102, 308, 332, 347, 371, 767, 866, 922
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 353, 1006
HpyF3I CTNAG 2 cut(s) 90, 527
HpySE526I ACGT 2 cut(s) 151, 740
Hsp92II CATG 4 cut(s) 479, 686, 965, 1004
HspAI GCGC 1 cut(s) 1007
Ksp22I TGATCA 1 cut(s) 501
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 7 cut(s) 280, 472, 501, 569, 770, 910, 958
LmnI GCTCC 2 cut(s) 325, 1004
Lsp1109I GCAGC 4 cut(s) 55, 304, 343, 1009
LweI GCATC 2 cut(s) 319, 931
MabI ACCWGGT 1 cut(s) 858
MaeI CTAG 2 cut(s) 824, 975
MaeII ACGT 2 cut(s) 151, 740
MaeIII GTNAC 3 cut(s) 212, 638, 854
MalI GATC 7 cut(s) 282, 474, 503, 571, 772, 912, 960
MboI GATC 7 cut(s) 280, 472, 501, 569, 770, 910, 958
MboII GAAGA 5 cut(s) 119, 206, 245, 434, 585
MfeI CAATTG 1 cut(s) 309
MluCI AATT 6 cut(s) 28, 309, 546, 582, 775, 833
Mph1103I ATGCAT 1 cut(s) 924
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 4 cut(s) 96, 339, 758, 1036
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 136
MspCI CTTAAG 1 cut(s) 757
MspR9I CCNGG 1 cut(s) 860
MunI CAATTG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 1 cut(s) 860
MwoI GCNNNNNNNGC 3 cut(s) 314, 353, 1006
NdeII GATC 7 cut(s) 280, 472, 501, 569, 770, 910, 958
NlaIII CATG 4 cut(s) 479, 686, 965, 1004
NlaIV GGNNCC 1 cut(s) 900
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 924
NspI RCATGY 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 37
PagI TCATGA 1 cut(s) 961
PciI ACATGT 1 cut(s) 682
PctI GAATGC 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 2 cut(s) 176, 612
PkrI GCNGC 4 cut(s) 45, 319, 358, 999
Ppu21I YACGTR 1 cut(s) 152
PscI ACATGT 1 cut(s) 682
PsiI TTATAA 2 cut(s) 26, 552
Psp6I CCWGG 1 cut(s) 858
PspEI GGTNACC 1 cut(s) 638
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 1 cut(s) 900
PspPI GGNCC 1 cut(s) 131
RsaI GTAC 2 cut(s) 140, 813
RsaNI GTAC 2 cut(s) 139, 812
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 4 cut(s) 96, 339, 758, 1036
SatI GCNGC 4 cut(s) 44, 318, 357, 998
Sau3AI GATC 7 cut(s) 280, 472, 501, 569, 770, 910, 958
Sau96I GGNCC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 860
SexAI ACCWGGT 1 cut(s) 858
SfaNI GCATC 2 cut(s) 319, 931
SfcI CTRYAG 1 cut(s) 891
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 3 cut(s) 37, 124, 757
SmoI CTYRAG 3 cut(s) 37, 124, 757
Sse9I AATT 6 cut(s) 28, 309, 546, 582, 775, 833
SsiI CCGC 4 cut(s) 14, 134, 669, 729
SspI AATATT 1 cut(s) 650
SspMI CTAG 2 cut(s) 824, 975
StyD4I CCNGG 1 cut(s) 858
TaaI ACNGT 4 cut(s) 116, 212, 854, 1014
TaiI ACGT 2 cut(s) 154, 743
TaqI TCGA 8 cut(s) 38, 291, 572, 773, 785, 839, 925, 992
TasI AATT 6 cut(s) 28, 309, 546, 582, 775, 833
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 2 cut(s) 176, 612
Tru1I TTAA 4 cut(s) 96, 339, 758, 1036
Tru9I TTAA 4 cut(s) 96, 339, 758, 1036
TscAI CASTG 2 cut(s) 61, 217
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 4 cut(s) 43, 317, 356, 997
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 189, 953, 978
TspGWI ACGGA 2 cut(s) 272, 900
TspRI CASTG 2 cut(s) 61, 217
Vha464I CTTAAG 1 cut(s) 757
XagI CCTNNNNNAGG 2 cut(s) 620, 827
XapI RAATTY 4 cut(s) 28, 582, 775, 833
XceI RCATGY 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 2 cut(s) 824, 975
Zsp2I ATGCAT 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.