Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8489431.1

Orthogroup ID

OG0001246

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1731

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8489431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgaatgagaaagttcataatgaacaccttgcaagtgaagctaccccagatgatgcacatgttaccggaggaaacactctttgtgagattgaggaggtagagagtgaagaaagcaagactgaggagattaaaaatgaaaaaagcaagattgaggagttagagggcaaagaaagcaggcagcttgaggatcaaacattcaaaagaattcccgaaaggggacatgtaattggaaagagaaacattttcatcagttctgaggtggaagaagctctaggaacaatagaaaaagtcattttgagggttaggcaatataggttgagtgctgaaatgccatcctctggtttcaccaatgaagtctcacgaaaggaaaatgatggaggcaacccagagtccttagaagatgaagtccgctcaagtgaacatttttctgcagtacctaaaaatgagggcacggaaggggcgttgactgcacctccaaggaatagcaatgccattcaaaacataagttatgcaggctcaaattatttgtcaaaggaagttaaccataacagaatagtacctacttccccattgtgttcctcccaagatgggattgttgagatacctgttgtggataacatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

4.8

Isoelectric Point (pI)

65.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440
fragaria_vesca	FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770
malus_domestica	MD12G1043900.v1.1 MD14G1042900.v1.1
prunus_persica	Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1
pyrus_communis	pycom12g03770 pycom12g03780 pycom12g03790 pycom14g03640 pycom14g03650
rosa_chinensis	RchiOBHm_Chr3g0476671
rosa_laevigata	RLG00000001975 RLG00000023756
rosa_multiflora	Rmu_co8489431.1_g000001 Rmu_sc0008241.1_g000019 Rmu_sc0027136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235830 Rroxscaffold_6G00405100
rosa_rugosa	Rorug03G0156400 Rorug03G0156500 Rorug03G0156600
rosa_samantha	Rh3AG206800 Rh3BG239300 Rh3CG233200 Rh3DG233100 Rh3DG233200
rosa_wichuraiana	Rw3G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	411
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	204
AfaI	GTAC	2 cut(s)	435, 558
AfiI	CCNNNNNNNGG	3 cut(s)	215, 338, 588
AflIII	ACRYGT	2 cut(s)	58, 220
AgsI	TTSAA	2 cut(s)	199, 497
AluBI	AGCT	3 cut(s)	41, 181, 269
AluI	AGCT	3 cut(s)	41, 181, 269
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AsuHPI	GGTGA	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	3 cut(s)	340, 368, 581
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
BmsI	GCATC	1 cut(s)	43
BpuEI	CTTGAG	2 cut(s)	203, 397
BsaJI	CCNNGG	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 338, 588
Bse3DI	GCAATG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	3 cut(s)	215, 338, 588
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	2 cut(s)	111, 246
BseRI	GAGGAG	3 cut(s)	107, 137, 167
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	215, 338, 588
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	409
BspCNI	CTCAG	2 cut(s)	112, 247
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	176, 514
BstDEI	CTNAG	3 cut(s)	120, 255, 394
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 171, 467
BstNSI	RCATGY	2 cut(s)	62, 224
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	176, 514
Csp6I	GTAC	2 cut(s)	434, 557
CviAII	CATG	2 cut(s)	59, 221
CviJI	RGCY	4 cut(s)	41, 181, 269, 516
CviKI_1	RGCY	4 cut(s)	41, 181, 269, 516
CviQI	GTAC	2 cut(s)	434, 557
DdeI	CTNAG	3 cut(s)	120, 255, 394
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	476
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	2 cut(s)	62, 224
FaiI	YATR	7 cut(s)	18, 60, 222, 312, 503, 510, 546
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	58, 220
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	179
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	2 cut(s)	62, 224
HincII	GTYRAC	2 cut(s)	465, 541
HindII	GTYRAC	2 cut(s)	465, 541
HinfI	GANTC	1 cut(s)	389
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	3 cut(s)	419, 465, 541
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	209, 360
Hpy8I	GTNNAC	3 cut(s)	419, 465, 541
HpyAV	CCTTC	1 cut(s)	449
HpyCH4V	TGCA	5 cut(s)	32, 56, 431, 470, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 171, 467
HpyF3I	CTNAG	3 cut(s)	120, 255, 394
Hsp92II	CATG	2 cut(s)	62, 224
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	60, 79, 160, 324, 399, 498
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	189
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	1 cut(s)	187
MboII	GAAGA	3 cut(s)	119, 275, 410
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	3 cut(s)	204, 225, 520
MlyI	GAGTC	1 cut(s)	398
MseI	TTAA	2 cut(s)	129, 540
MspI	CCGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	38, 171, 467
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	62, 224
NspI	RCATGY	2 cut(s)	62, 224
PciI	ACATGT	2 cut(s)	58, 220
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PscI	ACATGT	2 cut(s)	58, 220
PstI	CTGCAG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	435, 558
RsaNI	GTAC	2 cut(s)	434, 557
SaqAI	TTAA	2 cut(s)	129, 540
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	182, 412
SmoI	CTYRAG	2 cut(s)	182, 412
Sse9I	AATT	3 cut(s)	204, 225, 520
SsiI	CCGC	1 cut(s)	409
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	476
TasI	AATT	3 cut(s)	204, 225, 520
Tru1I	TTAA	2 cut(s)	129, 540
Tru9I	TTAA	2 cut(s)	129, 540
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	7 cut(s)	5, 17, 36, 150, 235, 366, 417
TspGWI	ACGGA	1 cut(s)	467
Van91I	CCANNNNNTGG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	2 cut(s)	62, 224
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.