AT5G06720

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003999
Physical Location & Seq
Reverse (-)
2077382 .. 2079005
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06720.1

Sequence Viewer

Length: 1008 bp
ATGGCTGTAACAAATCTTCCTACTTGTGATGGTTTGTTCATTATCAGTCTTATTGTCATCGTTTCTTCAATATTTGGGACATCATCTGCGCAACTAAACGCAACATTTTACTCTGGGACTTGTCCCAACGCCTCTGCCATCGTACGCAGCACTATTCAGCAAGCTCTTCAATCCGATACAAGAATCGGAGCCAGCCTCATCCGCCTTCATTTTCATGACTGTTTTGTTAATGGATGTGATGCATCGATCTTGCTTGACGACACTGGAAGCATCCAGAGCGAGAAGAACGCTGGTCCGAATGTAAACTCAGCTAGAGGATTCAACGTTGTTGATAATATCAAGACTGCCCTCGAAAACGCTTGCCCTGGTGTTGTCTCTTGCTCTGACGTTTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTGGCAGGAGGGCCATCATGGACTGTATTATTAGGAAGAAGAGATAGTCTCACGGCCAACCTCGCCGGTGCAAATTCGTCCATTCCTTCTCCCATCGAAAGCCTAAGCAACATCACATTTAAATTTTCGGCTGTCGGGCTTAATACAAACGATCTGGTAGCCTTATCTGGTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTATTCAACAACAGACTATTTAACTTCAGCGGGACAGGAAATCCCGATCCAACTCTAAACTCAACGCTTCTGAGCACTCTTCAACAGCTATGTCCTCAAAACGGTAGCGCATCAACGATCACCAATCTTGATTTGAGCACACCAGATGCGTTCGATAACAATTACTTCGCCAACCTTCAGAGCAACGATGGACTTCTTCAGTCAGACCAAGAGCTGTTCTCTACCACCGGTTCATCCACCATCGCGATTGTTACTTCGTTCGCAAGTAACCAGACTCTGTTTTTTCAGGCCTTTGCACAGTCCATGATCAATATGGGGAATATTAGTCCCTTGACTGGGAGTAATGGAGAGATTAGGTTAGACTGTAAGAAGGTTAATGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0002215 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0022414 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0048046 GO:0048367 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0090567 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

335

Amino Acids

34.99

Weight (kDa)

4.72

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 297 3.3e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 90, 594
AccII CGCG 1 cut(s) 866
AciI CCGC 2 cut(s) 202, 651
AclI AACGTT 1 cut(s) 324
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 2 cut(s) 493, 542
AcuI CTGAAG 3 cut(s) 631, 782, 803
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 3 cut(s) 722, 956, 957
AgeI ACCGGT 1 cut(s) 848
AgsI TTSAA 5 cut(s) 69, 170, 322, 628, 704
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 4 cut(s) 164, 311, 709, 835
AluI AGCT 4 cut(s) 164, 311, 709, 835
Alw21I GWGCWC 3 cut(s) 613, 698, 761
Alw26I GTCTC 2 cut(s) 379, 473
AlwI GGATC 1 cut(s) 662
AlwNI CAGNNNCTG 1 cut(s) 898
AoxI GGCC 3 cut(s) 431, 474, 909
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 493, 542
AsiGI ACCGGT 1 cut(s) 848
AspLEI GCGC 3 cut(s) 91, 595, 731
AspS9I GGNCC 2 cut(s) 293, 431
AsuHPI GGTGA 1 cut(s) 733
AvaII GGWCC 1 cut(s) 293
BarI GAAGNNNNNNTAC 1 cut(s) 32
Bbv12I GWGCWC 3 cut(s) 613, 698, 761
BbvI GCAGC 1 cut(s) 159
BccI CCATC 6 cut(s) 23, 146, 442, 521, 803, 869
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 1 cut(s) 927
BcoDI GTCTC 2 cut(s) 379, 473
BfaI CTAG 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 293, 431
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 5 cut(s) 229, 251, 279, 740, 757
BmuI ACTGGG 1 cut(s) 966
BplI GAGNNNNNCTC 6 cut(s) 180, 212, 453, 485, 824, 856
Bpu10I CCTNAGC 1 cut(s) 524
Bsa29I ATCGAT 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 364
BsaWI WCCGGW 1 cut(s) 848
Bsc4I CCNNNNNNNGG 3 cut(s) 722, 956, 957
Bse118I RCCGGY 2 cut(s) 485, 848
Bse1I ACTGG 2 cut(s) 268, 961
BseBI CCWGG 1 cut(s) 366
BseCI ATCGAT 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 4 cut(s) 198, 239, 270, 854
BseLI CCNNNNNNNGG 3 cut(s) 722, 956, 957
BseMII CTCAG 3 cut(s) 321, 396, 683
BseNI ACTGG 2 cut(s) 268, 961
BseXI GCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 866
BshFI GGCC 3 cut(s) 433, 476, 911
BshTI ACCGGT 1 cut(s) 848
BshVI ATCGAT 1 cut(s) 245
BsiHKAI GWGCWC 3 cut(s) 613, 698, 761
BsiSI CCGG 2 cut(s) 486, 849
BsiWI CGTACG 1 cut(s) 142
BslFI GGGAC 5 cut(s) 91, 108, 130, 667, 933
BslI CCNNNNNNNGG 3 cut(s) 722, 956, 957
BsmAI GTCTC 2 cut(s) 379, 473
BsmFI GGGAC 5 cut(s) 91, 108, 130, 667, 933
BsnI GGCC 3 cut(s) 433, 476, 911
Bsp1286I GDGCHC 3 cut(s) 613, 698, 761
Bsp143I GATC 5 cut(s) 246, 571, 667, 738, 927
Bsp68I TCGCGA 1 cut(s) 866
BspACI CCGC 2 cut(s) 202, 651
BspANI GGCC 3 cut(s) 433, 476, 911
BspCNI CTCAG 3 cut(s) 320, 397, 684
BspDI ATCGAT 1 cut(s) 245
BspFNI CGCG 1 cut(s) 866
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 662
BspQI GCTCTTC 1 cut(s) 171
BsrFI RCCGGY 2 cut(s) 485, 848
BsrI ACTGG 2 cut(s) 268, 961
BssAI RCCGGY 2 cut(s) 485, 848
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 5 cut(s) 246, 571, 667, 738, 927
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 5 cut(s) 221, 445, 725, 921, 986
Bst6I CTCTTC 3 cut(s) 171, 454, 705
BstC8I GCNNGC 4 cut(s) 162, 193, 361, 609
BstDEI CTNAG 4 cut(s) 307, 405, 524, 692
BstF5I GGATG 4 cut(s) 198, 239, 270, 854
BstFNI CGCG 1 cut(s) 866
BstHHI GCGC 3 cut(s) 91, 595, 731
BstKTI GATC 5 cut(s) 249, 574, 670, 741, 930
BstMAI GTCTC 2 cut(s) 379, 473
BstMBI GATC 5 cut(s) 246, 571, 667, 738, 927
BstMWI GCNNNNNNNGC 4 cut(s) 201, 276, 407, 482
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstUI CGCG 1 cut(s) 866
BstV1I GCAGC 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 245
BsuRI GGCC 3 cut(s) 433, 476, 911
BsuTUI ATCGAT 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 4 cut(s) 198, 239, 270, 854
BtsIMutI CAGTG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 866
Cac8I GCNNGC 4 cut(s) 162, 193, 361, 609
CaiI CAGNNNCTG 1 cut(s) 898
CciI TCATGA 1 cut(s) 214
CfoI GCGC 3 cut(s) 91, 595, 731
Cfr10I RCCGGY 2 cut(s) 485, 848
Cfr13I GGNCC 2 cut(s) 293, 431
ClaI ATCGAT 1 cut(s) 245
Csp6I GTAC 1 cut(s) 143
CspAI ACCGGT 1 cut(s) 848
CviAII CATG 3 cut(s) 215, 438, 925
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 4 cut(s) 307, 405, 524, 692
DpnI GATC 5 cut(s) 248, 573, 669, 740, 929
DpnII GATC 5 cut(s) 246, 571, 667, 738, 927
DraI TTTAAA 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 3 cut(s) 171, 454, 705
EarI CTCTTC 3 cut(s) 171, 454, 705
EciI GGCGGA 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 911
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 3 cut(s) 631, 782, 803
EcoRII CCWGG 1 cut(s) 364
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 3 cut(s) 218, 441, 928
FaiI YATR 6 cut(s) 216, 439, 597, 712, 926, 935
FaqI GGGAC 5 cut(s) 91, 108, 130, 667, 933
FatI CATG 3 cut(s) 214, 437, 924
FauI CCCGC 1 cut(s) 644
FbaI TGATCA 1 cut(s) 927
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 4 cut(s) 185, 246, 257, 841
Fsp4HI GCNGC 1 cut(s) 148
FspAI RTGCGCAY 1 cut(s) 594
FspBI CTAG 1 cut(s) 312
FspI TGCGCA 2 cut(s) 90, 594
GlaI GCGC 3 cut(s) 90, 594, 730
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 3 cut(s) 433, 476, 911
HapII CCGG 2 cut(s) 486, 849
HhaI GCGC 3 cut(s) 91, 595, 731
Hin1II CATG 3 cut(s) 218, 441, 928
Hin6I GCGC 3 cut(s) 89, 593, 729
HinP1I GCGC 3 cut(s) 89, 593, 729
HinfI GANTC 3 cut(s) 183, 318, 895
HpaII CCGG 2 cut(s) 486, 849
HphI GGTGA 1 cut(s) 733
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 8 cut(s) 175, 188, 297, 385, 406, 693, 801, 826
Hpy188III TCNNGA 6 cut(s) 215, 274, 340, 665, 749, 865
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 4 cut(s) 215, 516, 806, 985
HpyCH4III ACNGT 5 cut(s) 221, 445, 725, 921, 986
HpyCH4IV ACGT 3 cut(s) 324, 387, 599
HpyCH4V TGCA 3 cut(s) 242, 491, 917
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 276, 407, 482
HpyF3I CTNAG 4 cut(s) 307, 405, 524, 692
HpySE526I ACGT 3 cut(s) 324, 387, 599
Hsp92II CATG 3 cut(s) 218, 441, 928
HspAI GCGC 3 cut(s) 89, 593, 729
Ksp22I TGATCA 1 cut(s) 927
Kzo9I GATC 5 cut(s) 246, 571, 667, 738, 927
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 5 cut(s) 229, 251, 279, 740, 757
MaeI CTAG 1 cut(s) 312
MaeII ACGT 3 cut(s) 324, 387, 599
MaeIII GTNAC 3 cut(s) 7, 871, 887
MalI GATC 5 cut(s) 248, 573, 669, 740, 929
MboI GATC 5 cut(s) 246, 571, 667, 738, 927
MboII GAAGA 8 cut(s) 8, 57, 158, 295, 468, 471, 692, 809
MhlI GDGCHC 3 cut(s) 613, 698, 761
MluCI AATT 3 cut(s) 493, 542, 781
MlyI GAGTC 1 cut(s) 889
MmeI TCCRAC 1 cut(s) 695
MnlI CCTC 9 cut(s) 142, 206, 308, 359, 400, 412, 422, 491, 726
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 5 cut(s) 228, 540, 561, 642, 996
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 2 cut(s) 486, 849
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 866
MwoI GCNNNNNNNGC 4 cut(s) 201, 276, 407, 482
NdeII GATC 5 cut(s) 246, 571, 667, 738, 927
NlaIII CATG 3 cut(s) 218, 441, 928
NlaIV GGNNCC 1 cut(s) 190
NruI TCGCGA 1 cut(s) 866
NsbI TGCGCA 2 cut(s) 90, 594
NsiI ATGCAT 1 cut(s) 244
PagI TCATGA 1 cut(s) 214
PceI AGGCCT 1 cut(s) 911
PciSI GCTCTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 183, 318
Pfl23II CGTACG 1 cut(s) 142
PinAI ACCGGT 1 cut(s) 848
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 889
PpsI GAGTC 1 cut(s) 889
Psp1406I AACGTT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspLI CGTACG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 293, 431
PstNI CAGNNNCTG 1 cut(s) 898
RruI TCGCGA 1 cut(s) 866
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 5 cut(s) 228, 540, 561, 642, 996
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 5 cut(s) 246, 571, 667, 738, 927
Sau96I GGNCC 2 cut(s) 293, 431
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 3 cut(s) 613, 698, 761
SfaNI GCATC 5 cut(s) 229, 251, 279, 740, 757
SgrAI CRCCGGYG 1 cut(s) 485
SinI GGWCC 1 cut(s) 293
SmiI ATTTAAAT 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 3 cut(s) 493, 542, 781
SseBI AGGCCT 1 cut(s) 911
SsiI CCGC 2 cut(s) 202, 651
SspI AATATT 2 cut(s) 72, 943
SspMI CTAG 1 cut(s) 312
StuI AGGCCT 1 cut(s) 911
StyD4I CCNGG 1 cut(s) 364
SwaI ATTTAAAT 1 cut(s) 541
TaaI ACNGT 5 cut(s) 221, 445, 725, 921, 986
TaiI ACGT 3 cut(s) 327, 390, 602
TaqI TCGA 5 cut(s) 245, 351, 516, 613, 774
TasI AATT 3 cut(s) 493, 542, 781
TfiI GAWTC 2 cut(s) 183, 318
Tru1I TTAA 5 cut(s) 228, 540, 561, 642, 996
Tru9I TTAA 5 cut(s) 228, 540, 561, 642, 996
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 4 cut(s) 28, 197, 203, 843
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 2 cut(s) 493, 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.