Rw5G048710

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003999
Physical Location & Seq
Forward (+)
84597818 .. 84599735
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048710.1

Sequence Viewer

Length: 975 bp
ATGTCTACTTTTTCATATGTTGCAGCAGCAATTGTTCTCTTTACCCTTGTGTTGGGCAACTCCAATGCTCAGCTCAGCTCCACTTTTTACGACACAACGTGCCCTAATGTGTCGAGGGTGGTTCGTAATGTGGTGGAGCAAGCTCAACAGAATGATATTCGTATTGGCGCCAAACTCATCCGGGTTCACTTCCACGACTGCTTCGTCAATGGGTGTGATGCATCACTTTTGCTCGACGATGCAGACGACATAGACAGTGAAAAAAATGCAGTTCCAAATCTATCCACAGCTGGATATCCTGTGATTGATGACATCAAAACTGCACTCGAGAATGTTTGCCCTGGTGTTGTCTCCTGTGCTGATATTGTAGCTCTTGCTTCTCAGATCCTCGTTTCTGAGAATGGAGGACCGACTTGGGAAGTTCAATTGGGAAGAAGAGACAGTAGGACAGCCAACCGGGCTGGTACTACTGCCATTCCAAGCCCTTTAGAAACCCTTGCGCAAATTACCAAAAAGTTCACTGATGCAGGACTTGATTCCACAGATCTCGTTGCTTTGTCAGGTGCTCATACATTTGGCCGGGCACAGTGTTTAACTTTCGTCCACCGCCTATACAATTTCAGTGGTACCGGGAACCCCGACCCAAGCCTGGACACAACTTACTTGGAAACCCTACGCAAAACATGTCCCGAAGGCGGCAATGGAGGTACATTGGCCAACCTTGATCCTTCTACGCCCAATGGCTTCGACAATAACTACTTCACAAACCTTCAGAACAAGCAGGGGCTTCTCCAGACGGATCAGGAGCTGTTTTCGACCAGTGGAGCCGACACTATTTCCATTGTGGACCGGTTTGCTAATAGCCAGAGCGACTTCTTTGACACTTTTGCTAAGTCCATGATCAATATGGGAAATATAAAACCTTTGACGGGAAGTGATGGAGAAATTAGGTCTGATTGTAAAAGAGTTAACTAA

Protein Analysis

324

Amino Acids

34.83

Weight (kDa)

4.66

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 288 1.4e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
Acc16I TGCGCA 1 cut(s) 501
Acc65I GGTACC 1 cut(s) 626
AccB1I GGYRCC 2 cut(s) 167, 626
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 607, 696
AclWI GGATC 3 cut(s) 379, 719, 807
AcoI YGGCCR 2 cut(s) 577, 714
AcuI CTGAAG 1 cut(s) 755
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 99
AfaI GTAC 3 cut(s) 466, 628, 709
AfiI CCNNNNNNNGG 4 cut(s) 52, 649, 695, 929
AflIII ACRYGT 1 cut(s) 683
AgeI ACCGGT 1 cut(s) 849
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 2 cut(s) 340, 648
AluBI AGCT 6 cut(s) 73, 78, 143, 290, 371, 808
AluI AGCT 6 cut(s) 73, 78, 143, 290, 371, 808
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 355, 432
AlwI GGATC 3 cut(s) 379, 719, 807
AlwNI CAGNNNCTG 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 2 cut(s) 577, 714
ApeKI GCWGC 2 cut(s) 23, 26
AsiGI ACCGGT 1 cut(s) 849
Asp718I GGTACC 1 cut(s) 626
AspLEI GCGC 2 cut(s) 170, 502
AspS9I GGNCC 2 cut(s) 407, 847
AsuC2I CCSGG 4 cut(s) 182, 458, 581, 631
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 2 cut(s) 407, 847
BaeGI GKGCMC 2 cut(s) 104, 586
BalI TGGCCA 1 cut(s) 716
BanI GGYRCC 2 cut(s) 167, 626
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 2 cut(s) 35, 38
BccI CCATC 1 cut(s) 932
BciT130I CCWGG 2 cut(s) 342, 650
BclI TGATCA 1 cut(s) 900
BcnI CCSGG 4 cut(s) 182, 458, 581, 631
BcoDI GTCTC 2 cut(s) 355, 432
BfoI RGCGCY 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 458
BglII AGATCT 1 cut(s) 544
BisI GCNGC 3 cut(s) 24, 27, 697
BlpI GCTNAGC 2 cut(s) 69, 74
BlsI GCNGC 3 cut(s) 25, 28, 698
Bme1390I CCNGG 6 cut(s) 182, 342, 458, 581, 631, 650
Bme18I GGWCC 2 cut(s) 407, 847
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 407, 847
BmiI GGNNCC 4 cut(s) 169, 628, 635, 826
BmrFI CCNGG 6 cut(s) 182, 342, 458, 581, 631, 650
BmsI GCATC 4 cut(s) 208, 229, 230, 514
BpmI CTGGAG 1 cut(s) 776
Bpu1102I GCTNAGC 2 cut(s) 69, 74
BpuMI CCSGG 4 cut(s) 182, 458, 581, 631
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 849
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 649, 695, 929
Bse118I RCCGGY 1 cut(s) 849
Bse1I ACTGG 1 cut(s) 819
Bse3DI GCAATG 1 cut(s) 706
BseBI CCWGG 2 cut(s) 342, 650
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 4 cut(s) 52, 649, 695, 929
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 4 cut(s) 83, 88, 387, 395
BseNI ACTGG 1 cut(s) 819
BseSI GKGCMC 2 cut(s) 104, 586
BseXI GCAGC 2 cut(s) 35, 38
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 2 cut(s) 579, 716
BshNI GGYRCC 2 cut(s) 167, 626
BshTI ACCGGT 1 cut(s) 849
BsiHKAI GWGCWC 1 cut(s) 568
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 5 cut(s) 181, 457, 580, 630, 850
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 4 cut(s) 52, 649, 695, 929
BsmAI GTCTC 2 cut(s) 355, 432
BsmFI GGGAC 1 cut(s) 672
BsnI GGCC 2 cut(s) 579, 716
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 104, 568, 586
Bsp143I GATC 5 cut(s) 384, 544, 724, 799, 900
Bsp1720I GCTNAGC 2 cut(s) 69, 74
BspACI CCGC 2 cut(s) 607, 696
BspANI GGCC 2 cut(s) 579, 716
BspCNI CTCAG 4 cut(s) 82, 87, 388, 394
BspLI GGNNCC 4 cut(s) 169, 628, 635, 826
BspPI GGATC 3 cut(s) 379, 719, 807
BspT107I GGYRCC 2 cut(s) 167, 626
BsrDI GCAATG 1 cut(s) 706
BsrFI RCCGGY 1 cut(s) 849
BsrI ACTGG 1 cut(s) 819
BssAI RCCGGY 1 cut(s) 849
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 5 cut(s) 384, 544, 724, 799, 900
BssNI GRCGYC 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 342, 650
Bst4CI ACNGT 3 cut(s) 257, 443, 588
Bst6I CTCTTC 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 5 cut(s) 69, 74, 381, 396, 891
BstF5I GGATG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 2 cut(s) 170, 502
BstKTI GATC 5 cut(s) 387, 547, 727, 802, 903
BstMAI GTCTC 2 cut(s) 355, 432
BstMBI GATC 5 cut(s) 384, 544, 724, 799, 900
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 2 cut(s) 342, 650
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 6 cut(s) 180, 340, 456, 579, 629, 648
BstSLI GKGCMC 2 cut(s) 104, 586
BstV1I GCAGC 2 cut(s) 35, 38
BstX2I RGATCY 2 cut(s) 384, 544
BstYI RGATCY 2 cut(s) 384, 544
BsuRI GGCC 2 cut(s) 579, 716
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 5 cut(s) 262, 519, 593, 628, 826
Cac8I GCNNGC 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 808
CfoI GCGC 2 cut(s) 170, 502
Cfr10I RCCGGY 1 cut(s) 849
Cfr13I GGNCC 2 cut(s) 407, 847
Csp6I GTAC 3 cut(s) 465, 627, 708
CspAI ACCGGT 1 cut(s) 849
CspCI CAANNNNNGTGG 2 cut(s) 604, 639
CviAII CATG 2 cut(s) 684, 898
CviQI GTAC 3 cut(s) 465, 627, 708
DdeI CTNAG 5 cut(s) 69, 74, 381, 396, 891
DinI GGCGCC 1 cut(s) 169
DpnI GATC 5 cut(s) 386, 546, 726, 801, 902
DpnII GATC 5 cut(s) 384, 544, 724, 799, 900
DraIII CACNNNGTG 1 cut(s) 99
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 2 cut(s) 577, 714
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Eco32I GATATC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 407, 847
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 340, 648
EcoRV GATATC 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 223
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
FaeI CATG 2 cut(s) 687, 901
FaiI YATR 9 cut(s) 16, 18, 251, 570, 613, 685, 899, 908, 917
FaqI GGGAC 1 cut(s) 672
FatI CATG 2 cut(s) 683, 897
FauNDI CATATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 900
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 24, 27, 697
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 24, 27, 697
FspI TGCGCA 1 cut(s) 501
GlaI GCGC 2 cut(s) 169, 501
GluI GCNGC 3 cut(s) 24, 27, 697
GsuI CTGGAG 1 cut(s) 776
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 2 cut(s) 579, 716
HapII CCGG 5 cut(s) 181, 457, 580, 630, 850
HhaI GCGC 2 cut(s) 170, 502
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 687, 901
Hin6I GCGC 2 cut(s) 168, 500
HinP1I GCGC 2 cut(s) 168, 500
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HinfI GANTC 1 cut(s) 536
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 5 cut(s) 181, 457, 580, 630, 850
Hpy166II GTNNAC 6 cut(s) 6, 187, 519, 604, 847, 970
Hpy188I TCNGA 4 cut(s) 384, 397, 774, 955
Hpy188III TCNNGA 4 cut(s) 328, 689, 793, 803
Hpy8I GTNNAC 6 cut(s) 6, 187, 519, 604, 847, 970
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 686, 738, 779
HpyCH4III ACNGT 3 cut(s) 257, 443, 588
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 6 cut(s) 23, 221, 242, 269, 323, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 5 cut(s) 69, 74, 381, 396, 891
HpySE526I ACGT 1 cut(s) 98
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 687, 901
HspAI GCGC 2 cut(s) 168, 500
KasI GGCGCC 1 cut(s) 167
KpnI GGTACC 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 900
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 5 cut(s) 384, 544, 724, 799, 900
LmnI GCTCC 4 cut(s) 83, 136, 805, 824
Lsp1109I GCAGC 2 cut(s) 35, 38
LweI GCATC 4 cut(s) 208, 229, 230, 514
MaeII ACGT 1 cut(s) 98
MalI GATC 5 cut(s) 386, 546, 726, 801, 902
MboI GATC 5 cut(s) 384, 544, 724, 799, 900
MboII GAAGA 2 cut(s) 444, 447
MfeI CAATTG 2 cut(s) 30, 425
MflI RGATCY 2 cut(s) 384, 544
MhlI GDGCHC 3 cut(s) 104, 568, 586
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 5 cut(s) 30, 425, 504, 616, 945
MluNI TGGCCA 1 cut(s) 716
Mly113I GGCGCC 1 cut(s) 168
MnlI CCTC 4 cut(s) 108, 398, 398, 698
Mox20I TGGCCA 1 cut(s) 716
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 716
MseI TTAA 2 cut(s) 593, 969
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 5 cut(s) 181, 457, 580, 630, 850
MspR9I CCNGG 6 cut(s) 182, 342, 458, 581, 631, 650
MunI CAATTG 2 cut(s) 30, 425
MvaI CCWGG 2 cut(s) 342, 650
MwoI GCNNNNNNNGC 1 cut(s) 458
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 4 cut(s) 182, 458, 581, 631
NdeI CATATG 1 cut(s) 16
NdeII GATC 5 cut(s) 384, 544, 724, 799, 900
NlaIII CATG 2 cut(s) 687, 901
NlaIV GGNNCC 4 cut(s) 169, 628, 635, 826
NsbI TGCGCA 1 cut(s) 501
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 687
PaeR7I CTCGAG 1 cut(s) 326
PciI ACATGT 1 cut(s) 683
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 243
PfeI GAWTC 1 cut(s) 536
PinAI ACCGGT 1 cut(s) 849
PkrI GCNGC 3 cut(s) 25, 28, 698
PluTI GGCGCC 1 cut(s) 171
PscI ACATGT 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 340, 648
PspGI CCWGG 2 cut(s) 340, 648
PspN4I GGNNCC 4 cut(s) 169, 628, 635, 826
PspPI GGNCC 2 cut(s) 407, 847
PstNI CAGNNNCTG 1 cut(s) 808
PsuI RGATCY 2 cut(s) 384, 544
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 3 cut(s) 466, 628, 709
RsaNI GTAC 3 cut(s) 465, 627, 708
SaqAI TTAA 2 cut(s) 593, 969
SatI GCNGC 3 cut(s) 24, 27, 697
Sau3AI GATC 5 cut(s) 384, 544, 724, 799, 900
Sau96I GGNCC 2 cut(s) 407, 847
ScrFI CCNGG 6 cut(s) 182, 342, 458, 581, 631, 650
SduI GDGCHC 3 cut(s) 104, 568, 586
SfaNI GCATC 4 cut(s) 208, 229, 230, 514
SfoI GGCGCC 1 cut(s) 169
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 2 cut(s) 407, 847
SlaI CTCGAG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 5 cut(s) 30, 425, 504, 616, 945
SsiI CCGC 2 cut(s) 607, 696
SspDI GGCGCC 1 cut(s) 167
StyD4I CCNGG 6 cut(s) 180, 340, 456, 579, 629, 648
TaaI ACNGT 3 cut(s) 257, 443, 588
TaiI ACGT 1 cut(s) 101
TaqI TCGA 5 cut(s) 113, 234, 327, 747, 815
TaqII GACCGA 1 cut(s) 424
TasI AATT 5 cut(s) 30, 425, 504, 616, 945
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 2 cut(s) 593, 969
Tru9I TTAA 2 cut(s) 593, 969
TscAI CASTG 5 cut(s) 262, 526, 593, 628, 826
TseI GCWGC 2 cut(s) 23, 26
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 5 cut(s) 262, 526, 593, 628, 826
VpaK11BI GGWCC 2 cut(s) 407, 847
XceI RCATGY 1 cut(s) 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.