Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003999

Physical Location & Seq

Genomic Coordinates Reverse (-)

843032 .. 844717

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g01070.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCTTCATTTTCAATTGCAGGAGCAATATTTGTTCTTGTTTTTACTAGTGTGTTGGGAAATGTTAACGCTCAACTAAGCTCAACTTTCTACAGTACCACATGCCCGAATGTGACGAGCATTGTTCGTGGTGTGGTCGAGCAAGCTCAACAGAATGACATCCGGCTTGGTGCCAAACTCATCCGGGTGCATTTCCACGACTGCTTCGTCAATGGTTGTGATGGATCGATTATGCTAGACAACGCAGATGGAATAGATAGCGAGAAAGATGCAGGTCCCAATCTATCGACAGACGGATACAACGTCGTAGATGATATCAAAACTGCTCTCGAGAATGTTTGCCCTGGTGTTGTCTCCTGTTCTGACATTTTAGCAATTGCTTCTGAAATTCTTGTTTCTGCGAATGGAGGGCCGACGTGGGAAGTTCAATTGGGAAGAAGAGACAGTAGGACAGCCAACCGAGCTGGTACCACTGCCATTCCAGGCTTTGGCGAAAACCTTGATCAACTTTCACAAAAATTTGGCGACGCAGGATTAGATTCCACTGATCTGGTTGCTTTATCAGGTGCTCATACATTTGGCCGGGCAAGATGTTCAACTTTCGTTCACCGCCTCTACAATTTCAGTGGCACCGGCAACCCGGACCCGACCATGGAAGCCGGATACTTGGAAACCCTCCGCCAAACATGTCCTCAAAACGGCAACGGAGATACATTGAACGACCTTGACCAATCCACCCGCGATGCCTTCGACAACAACTACTTTACAAATCTCCAAAACAACCGTGGGCTTCTCCAAACCGATCAGGTGCTGTTCTCAACTAGCGGAGACACCGTTGCGATTGTGAACCGCTTTGCAAATAGCCAAAGTGACTTTTTTGATAGCTTTGGTCAGTCCATGATCAATATGGGGAATATAGGAGTTTTGACAGGCACCAATGGAGAGATTAGGACTAATTGCAGAAGGGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

325

Amino Acids

34.72

Weight (kDa)

4.56

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06720 AT5G06730
fragaria_vesca	FvH4_3g44360
malus_domestica	MD03G1014200.v1.1 MD03G1014400.v1.1 MD11G1015300.v1.1 MD12G1056000.v1.1
prunus_persica	Prupe.6G013500_v2.0.a1 Prupe.6G013600_v2.0.a1 Prupe.7G079100_v2.0.a1
pyrus_communis	pycom03g01180 pycom11g01070 pycom12g04890
rosa_chinensis	RchiOBHm_Chr5g0054001 RchiOBHm_Chr5g0080751 RchiOBHm_Chr5g0080861 RchiOBHm_Chr5g0080911
rosa_laevigata	RLG00000036891 RLG00000036897
rosa_multiflora	Rmu_sc0003177.1_g000004 Rmu_sc0003177.1_g000020
rosa_roxburghii	Rroxscaffold_1G00002590
rosa_rugosa	Rorug05G0472000
rosa_samantha	Rh5AG525400 Rh5BG547400 Rh5BG547900 Rh5CG570900 Rh5CG571400 Rh5DG557700
rosa_wichuraiana	Rw5G048710 Rw5G048720 Rw5G049270 Rw5G049300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	263
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	4 cut(s)	170, 467, 629, 932
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccII	CGCG	1 cut(s)	741
AciI	CCGC	5 cut(s)	610, 679, 739, 825, 850
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	2 cut(s)	387, 518
AfaI	GTAC	2 cut(s)	97, 469
AfiI	CCNNNNNNNGG	3 cut(s)	488, 652, 698
AflIII	ACRYGT	1 cut(s)	686
AgsI	TTSAA	4 cut(s)	15, 428, 597, 718
AhlI	ACTAGT	1 cut(s)	47
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	2 cut(s)	343, 481
AluBI	AGCT	4 cut(s)	81, 146, 464, 885
AluI	AGCT	4 cut(s)	81, 146, 464, 885
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	3 cut(s)	358, 435, 822
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	811
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	410, 580
ApoI	RAATTY	2 cut(s)	387, 518
Asp718I	GGTACC	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	275, 410, 643
AsuC2I	CCSGG	3 cut(s)	185, 584, 641
AsuHPI	GGTGA	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	275, 643
BanI	GGYRCC	4 cut(s)	170, 467, 629, 932
Bbv12I	GWGCWC	1 cut(s)	571
BccI	CCATC	2 cut(s)	215, 242
BceAI	ACGGC	1 cut(s)	715
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	2 cut(s)	345, 483
BciVI	GTATCC	2 cut(s)	290, 656
BclI	TGATCA	2 cut(s)	502, 900
BcnI	CCSGG	3 cut(s)	185, 584, 641
BcoDI	GTCTC	3 cut(s)	358, 435, 822
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	3 cut(s)	48, 236, 822
BfmI	CTRYAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	263
BfuI	GTATCC	2 cut(s)	290, 656
Bme1390I	CCNGG	5 cut(s)	185, 345, 483, 584, 641
Bme18I	GGWCC	2 cut(s)	275, 643
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	3 cut(s)	275, 410, 643
BmiI	GGNNCC	6 cut(s)	172, 277, 469, 631, 645, 934
BmrFI	CCNGG	5 cut(s)	185, 345, 483, 584, 641
BmsI	GCATC	2 cut(s)	259, 733
BpuMI	CCSGG	3 cut(s)	185, 584, 641
Bsa29I	ATCGAT	1 cut(s)	227
BsaJI	CCNNGG	3 cut(s)	343, 651, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	3 cut(s)	488, 652, 698
Bse118I	RCCGGY	1 cut(s)	632
BseBI	CCWGG	2 cut(s)	345, 483
BseCI	ATCGAT	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	343, 651, 784
BseGI	GGATG	2 cut(s)	159, 180
BseLI	CCNNNNNNNGG	3 cut(s)	488, 652, 698
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	2 cut(s)	412, 582
BshNI	GGYRCC	4 cut(s)	170, 467, 629, 932
BshVI	ATCGAT	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	6 cut(s)	163, 184, 583, 633, 641, 660
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	3 cut(s)	488, 652, 698
BsmAI	GTCTC	3 cut(s)	358, 435, 822
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	412, 582
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	224, 502, 547, 802, 900
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	5 cut(s)	610, 679, 739, 825, 850
BspANI	GGCC	2 cut(s)	412, 582
BspDI	ATCGAT	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	6 cut(s)	172, 277, 469, 631, 645, 934
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	232
BspT107I	GGYRCC	4 cut(s)	170, 467, 629, 932
BsrFI	RCCGGY	1 cut(s)	632
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	343, 651, 784
BssMI	GATC	5 cut(s)	224, 502, 547, 802, 900
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	2 cut(s)	345, 483
Bst4CI	ACNGT	4 cut(s)	95, 446, 785, 835
Bst6I	CTCTTC	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	2 cut(s)	651, 784
BstF5I	GGATG	2 cut(s)	159, 180
BstFNI	CGCG	1 cut(s)	741
BstKTI	GATC	5 cut(s)	227, 505, 550, 805, 903
BstMAI	GTCTC	3 cut(s)	358, 435, 822
BstMBI	GATC	5 cut(s)	224, 502, 547, 802, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	2 cut(s)	345, 483
BstNSI	RCATGY	2 cut(s)	105, 690
BstSCI	CCNGG	5 cut(s)	183, 343, 481, 582, 639
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	741
BstXI	CCANNNNNNTGG	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	227
BsuI	GTATCC	2 cut(s)	290, 656
BsuRI	GGCC	2 cut(s)	412, 582
BsuTUI	ATCGAT	1 cut(s)	227
BtgI	CCRYGG	2 cut(s)	651, 784
BtgZI	GCGATG	1 cut(s)	756
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	159, 180
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	3 cut(s)	471, 543, 631
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	811
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	3 cut(s)	275, 410, 643
ClaI	ATCGAT	1 cut(s)	227
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	2 cut(s)	96, 468
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	4 cut(s)	102, 652, 687, 898
CviQI	GTAC	2 cut(s)	96, 468
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	5 cut(s)	226, 504, 549, 804, 902
DpnII	GATC	5 cut(s)	224, 502, 547, 802, 900
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
EciI	GGCGGA	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	275, 643
Eco88I	CYCGRG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	343, 481
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	4 cut(s)	105, 655, 690, 901
FaiI	YATR	8 cut(s)	103, 233, 573, 653, 688, 899, 908, 917
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	4 cut(s)	101, 651, 686, 897
FauI	CCCGC	1 cut(s)	746
FbaI	TGATCA	2 cut(s)	502, 900
FokI	GGATG	2 cut(s)	146, 167
FspBI	CTAG	3 cut(s)	48, 236, 822
HaeIII	GGCC	2 cut(s)	412, 582
HapII	CCGG	6 cut(s)	163, 184, 583, 633, 641, 660
HgaI	GACGC	1 cut(s)	536
Hin1II	CATG	4 cut(s)	105, 655, 690, 901
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	539
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	6 cut(s)	163, 184, 583, 633, 641, 660
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	3 cut(s)	67, 607, 847
Hpy188I	TCNGA	2 cut(s)	364, 385
Hpy188III	TCNNGA	2 cut(s)	329, 331
Hpy8I	GTNNAC	3 cut(s)	67, 607, 847
Hpy99I	CGWCG	3 cut(s)	308, 418, 530
HpyAV	CCTTC	2 cut(s)	757, 957
HpyCH4III	ACNGT	4 cut(s)	95, 446, 785, 835
HpyCH4IV	ACGT	2 cut(s)	303, 416
HpyCH4V	TGCA	5 cut(s)	20, 190, 272, 857, 960
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	2 cut(s)	303, 416
Hsp92II	CATG	4 cut(s)	105, 655, 690, 901
KpnI	GGTACC	1 cut(s)	471
Ksp22I	TGATCA	2 cut(s)	502, 900
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	224, 502, 547, 802, 900
LmnI	GCTCC	1 cut(s)	23
LweI	GCATC	2 cut(s)	259, 733
MaeI	CTAG	3 cut(s)	48, 236, 822
MaeII	ACGT	2 cut(s)	303, 416
MaeIII	GTNAC	2 cut(s)	112, 869
MalI	GATC	5 cut(s)	226, 504, 549, 804, 902
MboI	GATC	5 cut(s)	224, 502, 547, 802, 900
MboII	GAAGA	2 cut(s)	447, 450
MfeI	CAATTG	3 cut(s)	15, 375, 428
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	8 cut(s)	15, 375, 387, 428, 518, 619, 955, 970
MnlI	CCTC	4 cut(s)	401, 623, 686, 702
MseI	TTAA	3 cut(s)	66, 969, 973
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	6 cut(s)	163, 184, 583, 633, 641, 660
MspR9I	CCNGG	5 cut(s)	185, 345, 483, 584, 641
MunI	CAATTG	3 cut(s)	15, 375, 428
MvaI	CCWGG	2 cut(s)	345, 483
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	3 cut(s)	185, 584, 641
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	5 cut(s)	224, 502, 547, 802, 900
NlaIII	CATG	4 cut(s)	105, 655, 690, 901
NlaIV	GGNNCC	6 cut(s)	172, 277, 469, 631, 645, 934
NmuCI	GTSAC	2 cut(s)	112, 869
NspI	RCATGY	2 cut(s)	105, 690
PacI	TTAATTAA	1 cut(s)	973
PaeR7I	CTCGAG	1 cut(s)	329
PciI	ACATGT	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 300
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	488
PpuMI	RGGWCCY	1 cut(s)	275
PscI	ACATGT	1 cut(s)	686
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	343, 481
PspGI	CCWGG	2 cut(s)	343, 481
PspN4I	GGNNCC	6 cut(s)	172, 277, 469, 631, 645, 934
PspPI	GGNCC	3 cut(s)	275, 410, 643
PspPPI	RGGWCCY	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	811
RsaI	GTAC	2 cut(s)	97, 469
RsaNI	GTAC	2 cut(s)	96, 468
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	66, 969, 973
Sau3AI	GATC	5 cut(s)	224, 502, 547, 802, 900
Sau96I	GGNCC	3 cut(s)	275, 410, 643
ScrFI	CCNGG	5 cut(s)	185, 345, 483, 584, 641
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	259, 733
SfcI	CTRYAG	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	275, 643
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	8 cut(s)	15, 375, 387, 428, 518, 619, 955, 970
SsiI	CCGC	5 cut(s)	610, 679, 739, 825, 850
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	3 cut(s)	48, 236, 822
StyD4I	CCNGG	5 cut(s)	183, 343, 481, 582, 639
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	4 cut(s)	95, 446, 785, 835
TaiI	ACGT	2 cut(s)	306, 419
TaqI	TCGA	5 cut(s)	138, 227, 287, 330, 750
TasI	AATT	8 cut(s)	15, 375, 387, 428, 518, 619, 955, 970
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	66, 969, 973
Tru9I	TTAA	3 cut(s)	66, 969, 973
TscAI	CASTG	3 cut(s)	478, 550, 631
TseFI	GTSAC	2 cut(s)	112, 869
Tsp45I	GTSAC	2 cut(s)	112, 869
TspGWI	ACGGA	2 cut(s)	309, 720
TspRI	CASTG	3 cut(s)	478, 550, 631
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	275, 643
XapI	RAATTY	2 cut(s)	387, 518
XceI	RCATGY	2 cut(s)	105, 690
XcmI	CCANNNNNNNNNTGG	2 cut(s)	782, 904
XhoI	CTCGAG	1 cut(s)	329
XspI	CTAG	3 cut(s)	48, 236, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.