Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003177.1

Orthogroup ID

OG0003999

Physical Location & Seq

Genomic Coordinates Forward (+)

74736 .. 76666

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003177.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgtctactttttcatatgttgcagcagcaattgttctctttacccttgtgttgggcaactccaatgctcagctcagctccactttttacgacacaacgtgccctaatgtgtcgagcgtggttcgtaatgtggtggagaaagctcaacagaatgatattcgtattggcgccaaactcatccgggttcacttccacgactgcttcgtcaatgggtgtgatgcatcacttttgctcgacgatgcagacgacatagacagtgaaaaaaatgcagttccgaatcaatccacagctggatatcctgtgattgatgacatcaaaactgcactcgagaatgtttgccctggtgttgtctcctgtgctgatattgtagctcttgcttctcagatactcgtttctgagaatggaggaccaacttgggaagttcaattgggaagaagagacagtaggacagccaaccgggctggtactactgccattccaatcccttttgaaaccctcgagcaaattaccaaaaagttcactgatgcaggacttgattccacagatctcgttgctttgtcaggtgctcatacatttggccgggcacagtgttcaactttcgtccaccgcctatacaatttcagtagtacggggaaccccgacccgagcctggacacaacctacttggaaaccttacgccaaacatgccccgaaggcggcaatggaggtacattggccaaccttgatccttctacgcccaatggcttcgacaacaactacttcacaaaccttcagaacaagcaggggcttctccagacggatcaggagctgttttcgaccagtggagccgacactagttccattgtggaccggtttgctaatagccaaagcgacttctttgacacttttgccaagtccatgatcaatatgggaaatataaaacctttgacgggcagtgatggagagattaggtctgattgtaaaagagttaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002215 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090567

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

324

Amino Acids

34.87

Weight (kDa)

4.57

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06720 AT5G06730
fragaria_vesca	FvH4_3g44360
malus_domestica	MD03G1014200.v1.1 MD03G1014400.v1.1 MD11G1015300.v1.1 MD12G1056000.v1.1
prunus_persica	Prupe.6G013500_v2.0.a1 Prupe.6G013600_v2.0.a1 Prupe.7G079100_v2.0.a1
pyrus_communis	pycom03g01180 pycom11g01070 pycom12g04890
rosa_chinensis	RchiOBHm_Chr5g0054001 RchiOBHm_Chr5g0080751 RchiOBHm_Chr5g0080861 RchiOBHm_Chr5g0080911
rosa_laevigata	RLG00000036891 RLG00000036897
rosa_multiflora	Rmu_sc0003177.1_g000004 Rmu_sc0003177.1_g000020
rosa_roxburghii	Rroxscaffold_1G00002590
rosa_rugosa	Rorug05G0472000
rosa_samantha	Rh5AG525400 Rh5BG547400 Rh5BG547900 Rh5CG570900 Rh5CG571400 Rh5DG557700
rosa_wichuraiana	Rw5G048710 Rw5G048720 Rw5G049270 Rw5G049300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	607, 696
AclWI	GGATC	2 cut(s)	719, 807
AcoI	YGGCCR	2 cut(s)	577, 714
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	99
AfaI	GTAC	3 cut(s)	466, 628, 709
AfiI	CCNNNNNNNGG	4 cut(s)	52, 649, 695, 929
AgeI	ACCGGT	1 cut(s)	849
AgsI	TTSAA	3 cut(s)	425, 491, 594
AhlI	ACTAGT	1 cut(s)	833
AjnI	CCWGG	2 cut(s)	340, 648
AluBI	AGCT	6 cut(s)	73, 78, 143, 290, 371, 808
AluI	AGCT	6 cut(s)	73, 78, 143, 290, 371, 808
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	2 cut(s)	355, 432
AlwI	GGATC	2 cut(s)	719, 807
AlwNI	CAGNNNCTG	1 cut(s)	808
Ama87I	CYCGRG	3 cut(s)	326, 497, 643
AoxI	GGCC	2 cut(s)	577, 714
ApeKI	GCWGC	2 cut(s)	23, 26
AsiGI	ACCGGT	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	407, 847
AsuC2I	CCSGG	3 cut(s)	182, 458, 581
AvaI	CYCGRG	3 cut(s)	326, 497, 643
AvaII	GGWCC	2 cut(s)	407, 847
BaeGI	GKGCMC	2 cut(s)	104, 586
BalI	TGGCCA	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	2 cut(s)	35, 38
BccI	CCATC	1 cut(s)	932
BciT130I	CCWGG	2 cut(s)	342, 650
BclI	TGATCA	1 cut(s)	900
BcnI	CCSGG	3 cut(s)	182, 458, 581
BcoDI	GTCTC	2 cut(s)	355, 432
BcuI	ACTAGT	1 cut(s)	833
BfaI	CTAG	1 cut(s)	834
BfoI	RGCGCY	1 cut(s)	171
BglI	GCCNNNNNGGC	2 cut(s)	458, 693
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	3 cut(s)	24, 27, 697
BlpI	GCTNAGC	2 cut(s)	69, 74
BlsI	GCNGC	3 cut(s)	25, 28, 698
Bme1390I	CCNGG	5 cut(s)	182, 342, 458, 581, 650
Bme18I	GGWCC	2 cut(s)	407, 847
BmeT110I	CYCGRG	3 cut(s)	326, 497, 643
BmgT120I	GGNCC	2 cut(s)	407, 847
BmiI	GGNNCC	3 cut(s)	169, 635, 826
BmrFI	CCNGG	5 cut(s)	182, 342, 458, 581, 650
BmsI	GCATC	4 cut(s)	208, 229, 230, 514
BpmI	CTGGAG	1 cut(s)	776
Bpu1102I	GCTNAGC	2 cut(s)	69, 74
BpuMI	CCSGG	3 cut(s)	182, 458, 581
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	849
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 649, 695, 929
Bse118I	RCCGGY	1 cut(s)	849
Bse1I	ACTGG	1 cut(s)	819
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	2 cut(s)	342, 650
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	4 cut(s)	52, 649, 695, 929
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	4 cut(s)	83, 88, 387, 395
BseNI	ACTGG	1 cut(s)	819
BseSI	GKGCMC	2 cut(s)	104, 586
BseXI	GCAGC	2 cut(s)	35, 38
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	579, 716
BshNI	GGYRCC	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	849
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	3 cut(s)	326, 497, 643
BsiSI	CCGG	4 cut(s)	181, 457, 580, 850
BslI	CCNNNNNNNGG	4 cut(s)	52, 649, 695, 929
BsmAI	GTCTC	2 cut(s)	355, 432
BsnI	GGCC	2 cut(s)	579, 716
BsoBI	CYCGRG	3 cut(s)	326, 497, 643
Bsp1286I	GDGCHC	3 cut(s)	104, 568, 586
Bsp143I	GATC	4 cut(s)	544, 724, 799, 900
Bsp1720I	GCTNAGC	2 cut(s)	69, 74
BspACI	CCGC	2 cut(s)	607, 696
BspANI	GGCC	2 cut(s)	579, 716
BspCNI	CTCAG	4 cut(s)	82, 87, 388, 394
BspLI	GGNNCC	3 cut(s)	169, 635, 826
BspPI	GGATC	2 cut(s)	719, 807
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	849
BsrI	ACTGG	1 cut(s)	819
BssAI	RCCGGY	1 cut(s)	849
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	4 cut(s)	544, 724, 799, 900
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	342, 650
Bst4CI	ACNGT	3 cut(s)	257, 443, 588
Bst6I	CTCTTC	1 cut(s)	430
BstACI	GRCGYC	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	69, 74, 381, 396
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	4 cut(s)	547, 727, 802, 903
BstMAI	GTCTC	2 cut(s)	355, 432
BstMBI	GATC	4 cut(s)	544, 724, 799, 900
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 684, 693
BstNI	CCWGG	2 cut(s)	342, 650
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	5 cut(s)	180, 340, 456, 579, 648
BstSLI	GKGCMC	2 cut(s)	104, 586
BstV1I	GCAGC	2 cut(s)	35, 38
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	579, 716
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	5 cut(s)	262, 519, 593, 826, 940
CaiI	CAGNNNCTG	1 cut(s)	808
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	849
Cfr13I	GGNCC	2 cut(s)	407, 847
Csp6I	GTAC	3 cut(s)	465, 627, 708
CspAI	ACCGGT	1 cut(s)	849
CviAII	CATG	2 cut(s)	684, 898
CviQI	GTAC	3 cut(s)	465, 627, 708
DdeI	CTNAG	4 cut(s)	69, 74, 381, 396
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	4 cut(s)	546, 726, 801, 902
DpnII	GATC	4 cut(s)	544, 724, 799, 900
DraIII	CACNNNGTG	1 cut(s)	99
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	2 cut(s)	577, 714
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	407, 847
Eco57I	CTGAAG	1 cut(s)	755
Eco88I	CYCGRG	3 cut(s)	326, 497, 643
EcoRII	CCWGG	2 cut(s)	340, 648
EcoRV	GATATC	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	223
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	2 cut(s)	687, 901
FaiI	YATR	9 cut(s)	16, 18, 251, 570, 613, 685, 899, 908, 917
FatI	CATG	2 cut(s)	683, 897
FauNDI	CATATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	900
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	24, 27, 697
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	24, 27, 697
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	24, 27, 697
GsuI	CTGGAG	1 cut(s)	776
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	579, 716
HapII	CCGG	4 cut(s)	181, 457, 580, 850
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	687, 901
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HinfI	GANTC	2 cut(s)	277, 536
HpaI	GTTAAC	1 cut(s)	970
HpaII	CCGG	4 cut(s)	181, 457, 580, 850
Hpy166II	GTNNAC	6 cut(s)	6, 187, 519, 604, 847, 970
Hpy188I	TCNGA	5 cut(s)	276, 384, 397, 774, 955
Hpy188III	TCNNGA	3 cut(s)	328, 793, 803
Hpy8I	GTNNAC	6 cut(s)	6, 187, 519, 604, 847, 970
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	686, 738, 779
HpyCH4III	ACNGT	3 cut(s)	257, 443, 588
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	6 cut(s)	23, 221, 242, 269, 323, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 684, 693
HpyF3I	CTNAG	4 cut(s)	69, 74, 381, 396
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	687, 901
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	900
KspAI	GTTAAC	1 cut(s)	970
Kzo9I	GATC	4 cut(s)	544, 724, 799, 900
LmnI	GCTCC	3 cut(s)	83, 805, 824
Lsp1109I	GCAGC	2 cut(s)	35, 38
LweI	GCATC	4 cut(s)	208, 229, 230, 514
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	1 cut(s)	98
MalI	GATC	4 cut(s)	546, 726, 801, 902
MboI	GATC	4 cut(s)	544, 724, 799, 900
MboII	GAAGA	2 cut(s)	444, 447
MfeI	CAATTG	2 cut(s)	30, 425
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	3 cut(s)	104, 568, 586
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	4 cut(s)	30, 425, 504, 616
MluNI	TGGCCA	1 cut(s)	716
Mly113I	GGCGCC	1 cut(s)	168
MnlI	CCTC	3 cut(s)	398, 506, 698
Mox20I	TGGCCA	1 cut(s)	716
Mph1103I	ATGCAT	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	1 cut(s)	969
Msp20I	TGGCCA	1 cut(s)	716
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	4 cut(s)	181, 457, 580, 850
MspR9I	CCNGG	5 cut(s)	182, 342, 458, 581, 650
MunI	CAATTG	2 cut(s)	30, 425
MvaI	CCWGG	2 cut(s)	342, 650
MwoI	GCNNNNNNNGC	3 cut(s)	458, 684, 693
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	3 cut(s)	182, 458, 581
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	4 cut(s)	544, 724, 799, 900
NlaIII	CATG	2 cut(s)	687, 901
NlaIV	GGNNCC	3 cut(s)	169, 635, 826
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	1 cut(s)	687
PaeR7I	CTCGAG	2 cut(s)	326, 497
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 243
PfeI	GAWTC	2 cut(s)	277, 536
PinAI	ACCGGT	1 cut(s)	849
PkrI	GCNGC	3 cut(s)	25, 28, 698
PluTI	GGCGCC	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	340, 648
PspGI	CCWGG	2 cut(s)	340, 648
PspN4I	GGNNCC	3 cut(s)	169, 635, 826
PspPI	GGNCC	2 cut(s)	407, 847
PspXI	VCTCGAGB	1 cut(s)	497
PstNI	CAGNNNCTG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	466, 628, 709
RsaNI	GTAC	3 cut(s)	465, 627, 708
SaqAI	TTAA	1 cut(s)	969
SatI	GCNGC	3 cut(s)	24, 27, 697
Sau3AI	GATC	4 cut(s)	544, 724, 799, 900
Sau96I	GGNCC	2 cut(s)	407, 847
ScrFI	CCNGG	5 cut(s)	182, 342, 458, 581, 650
SduI	GDGCHC	3 cut(s)	104, 568, 586
SfaNI	GCATC	4 cut(s)	208, 229, 230, 514
SfoI	GGCGCC	1 cut(s)	169
Sfr274I	CTCGAG	2 cut(s)	326, 497
SinI	GGWCC	2 cut(s)	407, 847
SlaI	CTCGAG	2 cut(s)	326, 497
SmlI	CTYRAG	2 cut(s)	326, 497
SmoI	CTYRAG	2 cut(s)	326, 497
SpeI	ACTAGT	1 cut(s)	833
Sse9I	AATT	4 cut(s)	30, 425, 504, 616
SsiI	CCGC	2 cut(s)	607, 696
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	5 cut(s)	180, 340, 456, 579, 648
TaaI	ACNGT	3 cut(s)	257, 443, 588
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	6 cut(s)	113, 234, 327, 498, 747, 815
TasI	AATT	4 cut(s)	30, 425, 504, 616
TauI	GCSGC	1 cut(s)	699
TfiI	GAWTC	2 cut(s)	277, 536
Tru1I	TTAA	1 cut(s)	969
Tru9I	TTAA	1 cut(s)	969
TscAI	CASTG	5 cut(s)	262, 526, 593, 826, 940
TseI	GCWGC	2 cut(s)	23, 26
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	5 cut(s)	262, 526, 593, 826, 940
VpaK11BI	GGWCC	2 cut(s)	407, 847
XceI	RCATGY	1 cut(s)	687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	904
XhoI	CTCGAG	2 cut(s)	326, 497
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	834
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.