Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003999

Physical Location & Seq

Genomic Coordinates Forward (+)

64859568 .. 64862564

Gene Structure 2997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0472000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGGATCCACGTTTCTCTGAATTTCCCAATTTCAATGATCAAACCCTTTTGCCTGATATGTTGAGTGAGTACCCAAGTAGTAATTCTTCTCAAGATCTTAGCTTTTTGGACCCAAATCACTGTAACTCTTCATCAAGCTTTAGCCCTGAGGGAGATGATGGTGAGTTTTCTGATAGTGTGCTCAAGTACATAAACCAGGTGCTTATGGAGGAGGACATGGAGTCAAAGCCATGTATGTTCCATGACCCTTTGGCTCTTCAAGCCACTGAGGAGTCTCTTTATGAGGTTATTGGGGGAGGGAAGTACCCAACTTCCCAAGACCAGAACCCTCTTTGTGTTGATCAAAATGTTCAGAGCCCAGATGGCGGTTATTTTTCTGGAAGTTCCAGTGATTCTAGCACTAGTCCTGGTCCTTCCGTTGACTCTTGCCCGGTCACTGCTCAGTTTGTAGAGACTAGGAGCTCTATATTGCAAAACCCTATTCCTGAAAACTTTGTTTTCCAGTCCCCTTCCAGGGCTAGGTCTCAATCGTCGTCGGATGGGTATGGAAATGGGAATGGGATGGTGGGTTCTTATAGGAGTGAGCTAATGGTTCCTGATGTGCTTAGTAAGAATGAATTGTTAGTGCAGTTTAACCTAGGGGCAGAGGAGGGTAGTAAGTTTCTTCCTAGAGGTCAATTGATTACTGCGGAGGGCAACAAGATGTATGCTGTGGTGAATAAAAAGGCTGGAGATGTGGTAGTAACAACGCAGAAGAATGGGAGTGAGCAATTTCATGTTGGTTCAAGAGGAAAAAAGAATCATCAAAGGGAAGATATAGATTTGGAGGATGGGAGGAGTAACAAGCAACCAGCAGTTTATATGGACGATGAGGAGGGTGAGCTGTCTGATATTTTTGACAAGGTGTTGCTCTGTAAGCCTTTGGAGAGTAAACACGATGAAGCCAGTCAGAATGGAGCAAACAATGCCCTGCAGCAGGATGTTCAATCTGTTGAAATTGGTAATGGGAAGGGTCGCGGCAAGATTCATGGCAACAGGAAGGAAGTGATAGATTTGAGGGCTCTTCTGATTTTATGTGCACAAGCTGTTTCTGTTGATGATCGTGAGACTGCTAGTGAGCTACTAAAGCAGATTATGCAGCACTCTTCCCCATTTGGTGATTGTGCTCAGAGGTTGGCTCATTGCTTTGCAAATGCTCTTGAAGCGAGGTTGGCTGGCACTGGAACTCAAATATATACTGCTTTATCTACTAAACGAATGTCAGCTGCTGATATGCTGAAGTATTACCAAGCTTATATTGCAGCCTGCCCGTTGAATAAGATGTCCTTGATCTTTGCAAACGATATGATTTTAAAAGCTGCTGAGAAAGCAGAAACACTACATATAATAGATTTTGGTATCCTTTATGGTTTTCAATGGCCTTCTTTCATTCATTGCCTCTCAAGAAGACCTGGTGGACCTCCCAAATTACGTATTACAGGGGTAGAGCTTCCCTTAAGTGGTTTTCGACCAGAAGAAAGAGTCCAAGAGACGGGGCATCGCTTGGCAAAGTATTGTAGGCAATTTAATGTTCCCTTTGAGTACTATGCCATAGCCAAAAAATGGGATACTGTCCAATTTGATGACCTCAAAGTTCAAAGAAATGAGGTGCTTGCTGTTAATTGTGTCTGCCGGTTTAAGAACCTCCTTGATGAGACAGTTGTGGTAAACAGTCCAAGGGATACTGTTCTAAATTTAATTAGGAAGTTGAATCCTGATATCTTTGTCCAAAGTGTTGTTAATGGATCCTATCATGCACCCTTCTTTGTTTCACGCTTCCGAGATGCACTATTCCACTTCTCTGCATATTTTGATATGTTTGATAACAATTTGCCTCGTGAAGATCAGATGAGATTGGGGTTTGAGAAAGAGTTTATCGGGCGTGAAGTTCTGAATATAGTAGCTTGTGAGGGCTCAGAAAGAATTGTGAGGCCAGAAACATATAAGCAGTGGCAGGTTCGGAACATGAGGGCTGGGTTCAGACAGCTGCCATTGGACCGTGAAGTCATGAACAAAATAAAGGATAAAGTAAAAACGGGGTGCAGCCCTGATTTTGTGGTTGATGAAGATGGCCGCTGGATGCTGCTGGGATGGAAGGGCAGAATTATGTTTGGTTCCGCCTGTTGGGCACCGTCTAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002215 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090567

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

727

Amino Acids

81.46

Weight (kDa)

5.36

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	352 - 722	6e-116	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06720 AT5G06730
fragaria_vesca	FvH4_3g44360
malus_domestica	MD03G1014200.v1.1 MD03G1014400.v1.1 MD11G1015300.v1.1 MD12G1056000.v1.1
prunus_persica	Prupe.6G013500_v2.0.a1 Prupe.6G013600_v2.0.a1 Prupe.7G079100_v2.0.a1
pyrus_communis	pycom03g01180 pycom11g01070 pycom12g04890
rosa_chinensis	RchiOBHm_Chr5g0054001 RchiOBHm_Chr5g0080751 RchiOBHm_Chr5g0080861 RchiOBHm_Chr5g0080911
rosa_laevigata	RLG00000036891 RLG00000036897
rosa_multiflora	Rmu_sc0003177.1_g000004 Rmu_sc0003177.1_g000020
rosa_roxburghii	Rroxscaffold_1G00002590
rosa_rugosa	Rorug05G0472000
rosa_samantha	Rh5AG525400 Rh5BG547400 Rh5BG547900 Rh5CG570900 Rh5CG571400 Rh5DG557700
rosa_wichuraiana	Rw5G048710 Rw5G048720 Rw5G049270 Rw5G049300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2042
Acc36I	ACCTGC	1 cut(s)	1984
AccB1I	GGYRCC	1 cut(s)	2167
AccB7I	CCANNNNNTGG	1 cut(s)	1602
AccII	CGCG	1 cut(s)	1017
AciI	CCGC	5 cut(s)	366, 689, 1017, 2113, 2157
AclWI	GGATC	3 cut(s)	12, 1779, 1792
AcoI	YGGCCR	1 cut(s)	2110
AcsI	RAATTY	2 cut(s)	20, 1732
AcuI	CTGAAG	1 cut(s)	1298
AfaI	GTAC	4 cut(s)	71, 188, 305, 1583
AfiI	CCNNNNNNNGG	9 cut(s)	365, 513, 514, 519, 976, 1499, 1531, 1602, 2163
AflII	CTTAAG	1 cut(s)	1495
AhdI	GACNNNNNGTC	1 cut(s)	220
AhlI	ACTAGT	1 cut(s)	401
AjnI	CCWGG	4 cut(s)	195, 406, 512, 1450
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AloI	GAACNNNNNNTCC	2 cut(s)	553, 585
Alw21I	GWGCWC	4 cut(s)	183, 464, 1081, 1168
Alw26I	GTCTC	6 cut(s)	279, 446, 528, 1100, 1523, 1688
Alw44I	GTGCAC	1 cut(s)	1077
AlwI	GGATC	3 cut(s)	12, 1779, 1792
AlwNI	CAGNNNCTG	1 cut(s)	1268
AoxI	GGCC	3 cut(s)	1418, 1970, 2110
ApaLI	GTGCAC	1 cut(s)	1077
ApeKI	GCWGC	8 cut(s)	973, 1138, 1265, 1301, 1358, 2026, 2082, 2122
ApoI	RAATTY	2 cut(s)	20, 1732
AspA2I	CCTAGG	1 cut(s)	637
AspS9I	GGNCC	4 cut(s)	109, 410, 1457, 2035
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	4 cut(s)	173, 727, 890, 1169
AvaII	GGWCC	4 cut(s)	109, 410, 1457, 2035
AvrII	CCTAGG	1 cut(s)	637
AxyI	CCTNAGG	1 cut(s)	147
BaeGI	GKGCMC	2 cut(s)	1081, 2170
BamHI	GGATCC	2 cut(s)	4, 1784
BanI	GGYRCC	1 cut(s)	2167
BanII	GRGCYC	4 cut(s)	359, 464, 1063, 1955
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
BauI	CACGAG	1 cut(s)	1875
BbsI	GAAGAC	1 cut(s)	1453
Bbv12I	GWGCWC	4 cut(s)	183, 464, 1081, 1168
BbvI	GCAGC	8 cut(s)	985, 1150, 1252, 1313, 1345, 2013, 2094, 2109
BccI	CCATC	7 cut(s)	152, 356, 533, 556, 824, 2102, 2124
BciT130I	CCWGG	4 cut(s)	197, 408, 514, 1452
BciVI	GTATCC	3 cut(s)	1409, 1600, 1714
BclI	TGATCA	2 cut(s)	37, 340
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	6 cut(s)	279, 446, 528, 1100, 1523, 1688
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	8 cut(s)	396, 402, 456, 519, 638, 669, 1113, 2175
BfmI	CTRYAG	1 cut(s)	971
BfrI	CTTAAG	1 cut(s)	1495
BfuAI	ACCTGC	1 cut(s)	1984
BfuI	GTATCC	3 cut(s)	1409, 1600, 1714
BglI	GCCNNNNNGGC	2 cut(s)	363, 2165
BglII	AGATCT	1 cut(s)	94
BlnI	CCTAGG	1 cut(s)	637
BmcAI	AGTACT	1 cut(s)	1583
Bme1390I	CCNGG	5 cut(s)	197, 408, 431, 514, 1452
Bme18I	GGWCC	4 cut(s)	109, 410, 1457, 2035
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmgT120I	GGNCC	4 cut(s)	109, 410, 1457, 2035
BmiI	GGNNCC	6 cut(s)	6, 111, 594, 1786, 2155, 2169
BmrFI	CCNGG	5 cut(s)	197, 408, 431, 514, 1452
BmsI	GCATC	3 cut(s)	1546, 1813, 2109
BpiI	GAAGAC	1 cut(s)	1453
BplI	GAGNNNNNCTC	2 cut(s)	1162, 1194
BpmI	CTGGAG	1 cut(s)	750
BpuEI	CTTGAG	3 cut(s)	75, 167, 1426
BpuMI	CCSGG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	1472
BsaI	GGTCTC	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	513, 637, 1715
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	9 cut(s)	365, 513, 514, 519, 976, 1499, 1531, 1602, 2163
Bse118I	RCCGGY	1 cut(s)	1671
Bse1I	ACTGG	4 cut(s)	387, 502, 945, 1225
Bse21I	CCTNAGG	1 cut(s)	147
Bse3DI	GCAATG	2 cut(s)	1180, 1432
BseBI	CCWGG	4 cut(s)	197, 408, 514, 1452
BseDI	CCNNGG	3 cut(s)	513, 637, 1715
BseGI	GGATG	6 cut(s)	544, 567, 835, 985, 2124, 2135
BseLI	CCNNNNNNNGG	9 cut(s)	365, 513, 514, 519, 976, 1499, 1531, 1602, 2163
BseMI	GCAATG	2 cut(s)	1180, 1432
BseMII	CTCAG	6 cut(s)	138, 258, 455, 1181, 1353, 1968
BseNI	ACTGG	4 cut(s)	387, 502, 945, 1225
BseRI	GAGGAG	5 cut(s)	224, 284, 662, 850, 887
BseSI	GKGCMC	2 cut(s)	1081, 2170
BseXI	GCAGC	8 cut(s)	985, 1150, 1252, 1313, 1345, 2013, 2094, 2109
BseYI	CCCAGC	2 cut(s)	2012, 2125
BsgI	GTGCAG	2 cut(s)	647, 2101
Bsh1236I	CGCG	1 cut(s)	1017
BshFI	GGCC	3 cut(s)	1420, 1972, 2112
BshNI	GGYRCC	1 cut(s)	2167
BsiHKAI	GWGCWC	4 cut(s)	183, 464, 1081, 1168
BsiSI	CCGG	2 cut(s)	431, 1672
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	9 cut(s)	365, 513, 514, 519, 976, 1499, 1531, 1602, 2163
BsmAI	GTCTC	6 cut(s)	279, 446, 528, 1100, 1523, 1688
BsmBI	CGTCTC	1 cut(s)	1523
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	1420, 1972, 2112
Bso31I	GGTCTC	1 cut(s)	528
Bsp1286I	GDGCHC	8 cut(s)	183, 359, 464, 1063, 1081, 1168, 1955, 2170
Bsp143I	GATC	8 cut(s)	4, 37, 94, 340, 1099, 1329, 1784, 1882
BspACI	CCGC	5 cut(s)	366, 689, 1017, 2113, 2157
BspANI	GGCC	3 cut(s)	1420, 1972, 2112
BspCNI	CTCAG	6 cut(s)	139, 259, 454, 1180, 1354, 1967
BspFNI	CGCG	1 cut(s)	1017
BspHI	TCATGA	1 cut(s)	2046
BspLI	GGNNCC	6 cut(s)	6, 111, 594, 1786, 2155, 2169
BspMAI	CTGCAG	1 cut(s)	975
BspMI	ACCTGC	1 cut(s)	1984
BspPI	GGATC	3 cut(s)	12, 1779, 1792
BspQI	GCTCTTC	2 cut(s)	261, 1068
BspT107I	GGYRCC	1 cut(s)	2167
BspTI	CTTAAG	1 cut(s)	1495
BspTNI	GGTCTC	1 cut(s)	528
BsrDI	GCAATG	2 cut(s)	1180, 1432
BsrFI	RCCGGY	1 cut(s)	1671
BsrI	ACTGG	4 cut(s)	387, 502, 945, 1225
BssAI	RCCGGY	1 cut(s)	1671
BssECI	CCNNGG	3 cut(s)	513, 637, 1715
BssMI	GATC	8 cut(s)	4, 37, 94, 340, 1099, 1329, 1784, 1882
BssSI	CACGAG	1 cut(s)	1875
BssT1I	CCWWGG	2 cut(s)	637, 1715
Bst2BI	CACGAG	1 cut(s)	1875
Bst2UI	CCWGG	4 cut(s)	197, 408, 514, 1452
Bst4CI	ACNGT	7 cut(s)	122, 1612, 1699, 1712, 1726, 2039, 2172
Bst6I	CTCTTC	4 cut(s)	133, 261, 1068, 1150
BstAFI	CTTAAG	1 cut(s)	1495
BstAPI	GCANNNNNTGC	2 cut(s)	965, 1135
BstBAI	YACGTR	1 cut(s)	1472
BstC8I	GCNNGC	3 cut(s)	1216, 1306, 1653
BstDEI	CTNAG	8 cut(s)	98, 147, 267, 441, 605, 1167, 1362, 1954
BstENI	CCTNNNNNAGG	1 cut(s)	974
BstF5I	GGATG	6 cut(s)	544, 567, 835, 985, 2124, 2135
BstFNI	CGCG	1 cut(s)	1017
BstKTI	GATC	8 cut(s)	7, 40, 97, 343, 1102, 1332, 1787, 1885
BstMAI	GTCTC	6 cut(s)	279, 446, 528, 1100, 1523, 1688
BstMBI	GATC	8 cut(s)	4, 37, 94, 340, 1099, 1329, 1784, 1882
BstNI	CCWGG	4 cut(s)	197, 408, 514, 1452
BstSCI	CCNGG	5 cut(s)	195, 406, 429, 512, 1450
BstSFI	CTRYAG	1 cut(s)	971
BstSLI	GKGCMC	2 cut(s)	1081, 2170
BstSNI	TACGTA	1 cut(s)	1472
BstUI	CGCG	1 cut(s)	1017
BstV1I	GCAGC	8 cut(s)	985, 1150, 1252, 1313, 1345, 2013, 2094, 2109
BstV2I	GAAGAC	1 cut(s)	1453
BstX2I	RGATCY	3 cut(s)	4, 94, 1784
BstYI	RGATCY	3 cut(s)	4, 94, 1784
Bsu36I	CCTNAGG	1 cut(s)	147
BsuI	GTATCC	3 cut(s)	1409, 1600, 1714
BsuRI	GGCC	3 cut(s)	1420, 1972, 2112
BtgZI	GCGATG	1 cut(s)	1523
BtsCI	GGATG	6 cut(s)	544, 567, 835, 985, 2124, 2135
BtsI	GCAGTG	2 cut(s)	435, 1994
BtsIMutI	CAGTG	6 cut(s)	118, 264, 394, 435, 1218, 1994
BveI	ACCTGC	1 cut(s)	1984
Cac8I	GCNNGC	3 cut(s)	1216, 1306, 1653
CaiI	CAGNNNCTG	1 cut(s)	1268
CciI	TCATGA	1 cut(s)	2046
Cfr10I	RCCGGY	1 cut(s)	1671
Cfr13I	GGNCC	4 cut(s)	109, 410, 1457, 2035
CsiI	ACCWGGT	2 cut(s)	195, 1450
Csp6I	GTAC	4 cut(s)	70, 187, 304, 1582
CviAII	CATG	8 cut(s)	217, 231, 242, 776, 1028, 1793, 2005, 2047
CviQI	GTAC	4 cut(s)	70, 187, 304, 1582
DdeI	CTNAG	8 cut(s)	98, 147, 267, 441, 605, 1167, 1362, 1954
DpnI	GATC	8 cut(s)	6, 39, 96, 342, 1101, 1331, 1786, 1884
DpnII	GATC	8 cut(s)	4, 37, 94, 340, 1099, 1329, 1784, 1882
DraI	TTTAAA	1 cut(s)	1353
DrdI	GACNNNNNNGTC	1 cut(s)	2042
DriI	GACNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	2042
EaeI	YGGCCR	1 cut(s)	2110
Eam1104I	CTCTTC	4 cut(s)	133, 261, 1068, 1150
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	4 cut(s)	133, 261, 1068, 1150
EciI	GGCGGA	1 cut(s)	2146
Ecl136II	GAGCTC	1 cut(s)	462
Eco105I	TACGTA	1 cut(s)	1472
Eco130I	CCWWGG	2 cut(s)	637, 1715
Eco24I	GRGCYC	4 cut(s)	359, 464, 1063, 1955
Eco31I	GGTCTC	1 cut(s)	528
Eco32I	GATATC	1 cut(s)	1759
Eco47I	GGWCC	4 cut(s)	109, 410, 1457, 2035
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	1298
Eco81I	CCTNAGG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	974
EcoRII	CCWGG	4 cut(s)	195, 406, 512, 1450
EcoRV	GATATC	1 cut(s)	1759
EcoT14I	CCWWGG	2 cut(s)	637, 1715
EcoT38I	GRGCYC	4 cut(s)	359, 464, 1063, 1955
ErhI	CCWWGG	2 cut(s)	637, 1715
Esp3I	CGTCTC	1 cut(s)	1523
FaeI	CATG	8 cut(s)	220, 234, 245, 779, 1031, 1796, 2008, 2050
FalI	AAGNNNNNCTT	2 cut(s)	1310, 1342
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	8 cut(s)	216, 230, 241, 775, 1027, 1792, 2004, 2046
FbaI	TGATCA	2 cut(s)	37, 340
FokI	GGATG	6 cut(s)	551, 574, 842, 992, 2131, 2142
FriOI	GRGCYC	4 cut(s)	359, 464, 1063, 1955
FspBI	CTAG	8 cut(s)	396, 402, 456, 519, 638, 669, 1113, 2175
GsaI	CCCAGC	2 cut(s)	2016, 2129
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	3 cut(s)	1420, 1972, 2112
HapII	CCGG	2 cut(s)	431, 1672
Hin1II	CATG	8 cut(s)	220, 234, 245, 779, 1031, 1796, 2008, 2050
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	2 cut(s)	136, 1290
HinfI	GANTC	8 cut(s)	221, 272, 392, 422, 799, 1024, 1521, 1750
HpaII	CCGG	2 cut(s)	431, 1672
HphI	GGTGA	4 cut(s)	173, 727, 890, 1169
Hpy166II	GTNNAC	5 cut(s)	421, 932, 1079, 1457, 1708
Hpy8I	GTNNAC	5 cut(s)	421, 932, 1079, 1457, 1708
Hpy99I	CGWCG	2 cut(s)	535, 538
HpyAV	CCTTC	7 cut(s)	423, 519, 1003, 1033, 1431, 1810, 2128
HpyCH4III	ACNGT	7 cut(s)	122, 1612, 1699, 1712, 1726, 2039, 2172
HpyCH4IV	ACGT	2 cut(s)	10, 1471
HpyF3I	CTNAG	8 cut(s)	98, 147, 267, 441, 605, 1167, 1362, 1954
HpySE526I	ACGT	2 cut(s)	10, 1471
Hsp92II	CATG	8 cut(s)	220, 234, 245, 779, 1031, 1796, 2008, 2050
Ksp22I	TGATCA	2 cut(s)	37, 340
Kzo9I	GATC	8 cut(s)	4, 37, 94, 340, 1099, 1329, 1784, 1882
LguI	GCTCTTC	2 cut(s)	261, 1068
LmnI	GCTCC	2 cut(s)	459, 956
Lsp1109I	GCAGC	8 cut(s)	985, 1150, 1252, 1313, 1345, 2013, 2094, 2109
LweI	GCATC	3 cut(s)	1546, 1813, 2109
MabI	ACCWGGT	2 cut(s)	195, 1450
MaeI	CTAG	8 cut(s)	396, 402, 456, 519, 638, 669, 1113, 2175
MaeII	ACGT	2 cut(s)	10, 1471
MaeIII	GTNAC	4 cut(s)	122, 433, 742, 839
MalI	GATC	8 cut(s)	6, 39, 96, 342, 1101, 1331, 1786, 1884
MboI	GATC	8 cut(s)	4, 37, 94, 340, 1099, 1329, 1784, 1882
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	3 cut(s)	4, 94, 1784
MhlI	GDGCHC	8 cut(s)	183, 359, 464, 1063, 1081, 1168, 1955, 2170
MlyI	GAGTC	4 cut(s)	230, 281, 416, 1530
MmeI	TCCRAC	1 cut(s)	516
MseI	TTAA	8 cut(s)	633, 1352, 1496, 1566, 1659, 1677, 1736, 1779
MspA1I	CMGCKG	3 cut(s)	1265, 2026, 2115
MspCI	CTTAAG	1 cut(s)	1495
MspI	CCGG	2 cut(s)	431, 1672
MspR9I	CCNGG	5 cut(s)	197, 408, 431, 514, 1452
MunI	CAATTG	1 cut(s)	677
MvaI	CCWGG	4 cut(s)	197, 408, 514, 1452
MvnI	CGCG	1 cut(s)	1017
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	8 cut(s)	4, 37, 94, 340, 1099, 1329, 1784, 1882
NlaIII	CATG	8 cut(s)	220, 234, 245, 779, 1031, 1796, 2008, 2050
NlaIV	GGNNCC	6 cut(s)	6, 111, 594, 1786, 2155, 2169
NmuCI	GTSAC	1 cut(s)	433
PagI	TCATGA	1 cut(s)	2046
PciSI	GCTCTTC	2 cut(s)	261, 1068
PfeI	GAWTC	4 cut(s)	392, 799, 1024, 1750
PflMI	CCANNNNNTGG	1 cut(s)	1602
PleI	GAGTC	4 cut(s)	229, 280, 416, 1529
PpsI	GAGTC	4 cut(s)	229, 280, 416, 1529
Ppu21I	YACGTR	1 cut(s)	1472
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	4 cut(s)	195, 406, 512, 1450
PspFI	CCCAGC	2 cut(s)	2012, 2125
PspGI	CCWGG	4 cut(s)	195, 406, 512, 1450
PspN4I	GGNNCC	6 cut(s)	6, 111, 594, 1786, 2155, 2169
PspPI	GGNCC	4 cut(s)	109, 410, 1457, 2035
PstI	CTGCAG	1 cut(s)	975
PstNI	CAGNNNCTG	1 cut(s)	1268
PsuI	RGATCY	3 cut(s)	4, 94, 1784
PvuII	CAGCTG	2 cut(s)	1265, 2026
RsaI	GTAC	4 cut(s)	71, 188, 305, 1583
RsaNI	GTAC	4 cut(s)	70, 187, 304, 1582
SacI	GAGCTC	1 cut(s)	464
SapI	GCTCTTC	2 cut(s)	261, 1068
SaqAI	TTAA	8 cut(s)	633, 1352, 1496, 1566, 1659, 1677, 1736, 1779
Sau3AI	GATC	8 cut(s)	4, 37, 94, 340, 1099, 1329, 1784, 1882
Sau96I	GGNCC	4 cut(s)	109, 410, 1457, 2035
ScaI	AGTACT	1 cut(s)	1583
SchI	GAGTC	4 cut(s)	230, 281, 416, 1530
ScrFI	CCNGG	5 cut(s)	197, 408, 431, 514, 1452
SduI	GDGCHC	8 cut(s)	183, 359, 464, 1063, 1081, 1168, 1955, 2170
SexAI	ACCWGGT	2 cut(s)	195, 1450
SfaNI	GCATC	3 cut(s)	1546, 1813, 2109
SfcI	CTRYAG	1 cut(s)	971
SinI	GGWCC	4 cut(s)	109, 410, 1457, 2035
SmlI	CTYRAG	4 cut(s)	90, 182, 1441, 1495
SmoI	CTYRAG	4 cut(s)	90, 182, 1441, 1495
SnaBI	TACGTA	1 cut(s)	1472
SpeI	ACTAGT	1 cut(s)	401
SsiI	CCGC	5 cut(s)	366, 689, 1017, 2113, 2157
SspMI	CTAG	8 cut(s)	396, 402, 456, 519, 638, 669, 1113, 2175
SstI	GAGCTC	1 cut(s)	464
StyD4I	CCNGG	5 cut(s)	195, 406, 429, 512, 1450
StyI	CCWWGG	2 cut(s)	637, 1715
TaaI	ACNGT	7 cut(s)	122, 1612, 1699, 1712, 1726, 2039, 2172
TaiI	ACGT	2 cut(s)	13, 1474
TaqI	TCGA	1 cut(s)	1507
TatI	WGTACW	2 cut(s)	186, 1581
TauI	GCSGC	2 cut(s)	1020, 2115
TfiI	GAWTC	4 cut(s)	392, 799, 1024, 1750
Tru1I	TTAA	8 cut(s)	633, 1352, 1496, 1566, 1659, 1677, 1736, 1779
Tru9I	TTAA	8 cut(s)	633, 1352, 1496, 1566, 1659, 1677, 1736, 1779
TscAI	CASTG	6 cut(s)	125, 271, 394, 442, 1225, 1994
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	8 cut(s)	973, 1138, 1265, 1301, 1358, 2026, 2082, 2122
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	9 cut(s)	120, 630, 764, 954, 1016, 1417, 1421, 2063, 2118
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	6 cut(s)	125, 271, 394, 442, 1225, 1994
Van91I	CCANNNNNTGG	1 cut(s)	1602
Vha464I	CTTAAG	1 cut(s)	1495
VneI	GTGCAC	1 cut(s)	1077
VpaK11BI	GGWCC	4 cut(s)	109, 410, 1457, 2035
XagI	CCTNNNNNAGG	1 cut(s)	974
XapI	RAATTY	2 cut(s)	20, 1732
XbaI	TCTAGA	1 cut(s)	2174
XmaJI	CCTAGG	1 cut(s)	637
XspI	CTAG	8 cut(s)	396, 402, 456, 519, 638, 669, 1113, 2175
ZrmI	AGTACT	1 cut(s)	1583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.