RLG00000036897

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003999
Physical Location & Seq
Forward (+)
86308964 .. 86310830
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036897

Sequence Viewer

Length: 972 bp
ATGTCTACATTTTCATTTGTTGCAGCAGCTGTTCTCTTTACCATTGTGTTGGGCAACTCCAATGCTCAGCTCAGCTCCACTTTTTACGACACAACGTGCCCTAATGTGTCGAGCGTGGTTCGTAATGTGGTGGAGCAAGCTCAACAGAATGATATTCGTATTGGCCCCAAACTCATCCGGGTTCACTTCCACGACTGCTTCGTTAATGGCTGTGATGCATCACTTTTGCTCGACGATGCAGCCGGCATAGTCAGTGAAAAAAATGCAGGTCCGAATCTATCCACAGCTGGATATCCGGTGATTGATGACATCAAAACTGCACTCGAGAATGTTTGCCCTGGTGTTGTCTCCTGTGCTGATATTGTAGCTCTTGCTTCTCAGATACTCGTTTCTGAGAATGGAGGACCAACTTGGGAAGTTCAATTGGGAAGAAGAGACAGTAGGACAGCCAACCGGCCTGGCACTACTGCCATTCCAAGCCCTTTTGAAACCCTCGAGCAAATTACCAAAAAGTTCACTGATGCAGGACTTGATTCCACAGATCTCGTTGCTTTGTCAGGTGCTCATACATTTGGCCGGGCACGGTGTTTAACTTTCGTCGACCGCCTATACAATTTCAGTGGTACGGGGAACCCCGACCCGAGCCTGGACACAACTTACTTGGAAACCCTACGCAAAACATGTCCCGAAGGCGGCAATGGAGGTACATTGGCCAACCTTGATCCTTCTACGCCCAATGGCTTCGACAACAACTACTTCACAAACCTTAAGAACAAGCAGGGGCTTCTCCAGTCGGATCAGGAGCTGTTTTCGACCAGTGGAGCCGACACTATTTCCATTGTGGACCGGTTTGCTAATAGCCAAAGCGACTTCTTTGACACTTTTGCTAAGTCCATGATCAATATGGGAAATATAAAACCTTTGACGGGCAGTGATGGAGAGATTAGGTCTGATTGTAAAAGAGTTAACTAA

Protein Analysis

324

Amino Acids

34.6

Weight (kDa)

4.73

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 287 1.9e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AccI GTMKAC 2 cut(s) 5, 600
AciI CCGC 2 cut(s) 604, 693
AclWI GGATC 2 cut(s) 716, 804
AcoI YGGCCR 2 cut(s) 574, 711
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 2 cut(s) 625, 706
AfiI CCNNNNNNNGG 3 cut(s) 646, 692, 926
AflII CTTAAG 1 cut(s) 767
AflIII ACRYGT 1 cut(s) 680
AgeI ACCGGT 1 cut(s) 846
AgsI TTSAA 2 cut(s) 422, 488
AjnI CCWGG 3 cut(s) 337, 457, 645
AluBI AGCT 7 cut(s) 29, 70, 75, 140, 287, 368, 805
AluI AGCT 7 cut(s) 29, 70, 75, 140, 287, 368, 805
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 2 cut(s) 352, 429
AlwI GGATC 2 cut(s) 716, 804
AlwNI CAGNNNCTG 2 cut(s) 29, 805
Ama87I CYCGRG 3 cut(s) 323, 494, 640
AoxI GGCC 4 cut(s) 163, 455, 574, 711
ApeKI GCWGC 3 cut(s) 23, 26, 239
AsiGI ACCGGT 1 cut(s) 846
AspS9I GGNCC 4 cut(s) 164, 269, 404, 844
AsuC2I CCSGG 2 cut(s) 179, 578
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 3 cut(s) 323, 494, 640
AvaII GGWCC 3 cut(s) 269, 404, 844
BaeGI GKGCMC 2 cut(s) 101, 583
BalI TGGCCA 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 3 cut(s) 35, 38, 251
BccI CCATC 1 cut(s) 929
BciT130I CCWGG 3 cut(s) 339, 459, 647
BclI TGATCA 1 cut(s) 897
BcnI CCSGG 2 cut(s) 179, 578
BcoDI GTCTC 2 cut(s) 352, 429
BfrI CTTAAG 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 257
BglII AGATCT 1 cut(s) 541
BisI GCNGC 4 cut(s) 24, 27, 240, 694
BlpI GCTNAGC 2 cut(s) 66, 71
BlsI GCNGC 4 cut(s) 25, 28, 241, 695
Bme1390I CCNGG 5 cut(s) 179, 339, 459, 578, 647
Bme18I GGWCC 3 cut(s) 269, 404, 844
BmeT110I CYCGRG 3 cut(s) 323, 494, 640
BmgT120I GGNCC 4 cut(s) 164, 269, 404, 844
BmiI GGNNCC 3 cut(s) 166, 632, 823
BmrFI CCNGG 5 cut(s) 179, 339, 459, 578, 647
BmsI GCATC 4 cut(s) 205, 226, 227, 511
BpmI CTGGAG 1 cut(s) 773
Bpu1102I GCTNAGC 2 cut(s) 66, 71
BpuMI CCSGG 2 cut(s) 179, 578
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 2 cut(s) 295, 846
Bsc4I CCNNNNNNNGG 3 cut(s) 646, 692, 926
Bse118I RCCGGY 3 cut(s) 242, 453, 846
Bse1I ACTGG 2 cut(s) 790, 816
Bse3DI GCAATG 1 cut(s) 703
BseBI CCWGG 3 cut(s) 339, 459, 647
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 646, 692, 926
BseMI GCAATG 1 cut(s) 703
BseMII CTCAG 4 cut(s) 80, 85, 384, 392
BseNI ACTGG 2 cut(s) 790, 816
BseSI GKGCMC 2 cut(s) 101, 583
BseXI GCAGC 3 cut(s) 35, 38, 251
BsgI GTGCAG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 4 cut(s) 165, 457, 576, 713
BshTI ACCGGT 1 cut(s) 846
BsiEI CGRYCG 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 3 cut(s) 323, 494, 640
BsiSI CCGG 6 cut(s) 178, 243, 296, 454, 577, 847
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 3 cut(s) 646, 692, 926
BsmAI GTCTC 2 cut(s) 352, 429
BsmFI GGGAC 1 cut(s) 669
BsnI GGCC 4 cut(s) 165, 457, 576, 713
BsoBI CYCGRG 3 cut(s) 323, 494, 640
Bsp1286I GDGCHC 3 cut(s) 101, 565, 583
Bsp143I GATC 4 cut(s) 541, 721, 796, 897
Bsp1720I GCTNAGC 2 cut(s) 66, 71
BspACI CCGC 2 cut(s) 604, 693
BspANI GGCC 4 cut(s) 165, 457, 576, 713
BspCNI CTCAG 4 cut(s) 79, 84, 385, 391
BspLI GGNNCC 3 cut(s) 166, 632, 823
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 2 cut(s) 716, 804
BspTI CTTAAG 1 cut(s) 767
BsrDI GCAATG 1 cut(s) 703
BsrFI RCCGGY 3 cut(s) 242, 453, 846
BsrI ACTGG 2 cut(s) 790, 816
BssAI RCCGGY 3 cut(s) 242, 453, 846
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 4 cut(s) 541, 721, 796, 897
Bst2UI CCWGG 3 cut(s) 339, 459, 647
Bst4CI ACNGT 2 cut(s) 440, 585
Bst6I CTCTTC 1 cut(s) 427
BstAFI CTTAAG 1 cut(s) 767
BstC8I GCNNGC 2 cut(s) 138, 244
BstDEI CTNAG 5 cut(s) 66, 71, 378, 393, 888
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 4 cut(s) 544, 724, 799, 900
BstMAI GTCTC 2 cut(s) 352, 429
BstMBI GATC 4 cut(s) 541, 721, 796, 897
BstMCI CGRYCG 1 cut(s) 604
BstNI CCWGG 3 cut(s) 339, 459, 647
BstNSI RCATGY 1 cut(s) 684
BstSCI CCNGG 5 cut(s) 177, 337, 457, 576, 645
BstSLI GKGCMC 2 cut(s) 101, 583
BstV1I GCAGC 3 cut(s) 35, 38, 251
BstX2I RGATCY 1 cut(s) 541
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 541
BsuRI GGCC 4 cut(s) 165, 457, 576, 713
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 937
BtsIMutI CAGTG 5 cut(s) 259, 516, 625, 823, 937
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 138, 244
CaiI CAGNNNCTG 2 cut(s) 29, 805
Cfr10I RCCGGY 3 cut(s) 242, 453, 846
Cfr13I GGNCC 4 cut(s) 164, 269, 404, 844
Csp6I GTAC 2 cut(s) 624, 705
CspAI ACCGGT 1 cut(s) 846
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviAII CATG 2 cut(s) 681, 895
CviQI GTAC 2 cut(s) 624, 705
DdeI CTNAG 5 cut(s) 66, 71, 378, 393, 888
DpnI GATC 4 cut(s) 543, 723, 798, 899
DpnII GATC 4 cut(s) 541, 721, 796, 897
DraIII CACNNNGTG 1 cut(s) 96
EaeI YGGCCR 2 cut(s) 574, 711
Eam1104I CTCTTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 293
Eco47I GGWCC 3 cut(s) 269, 404, 844
Eco88I CYCGRG 3 cut(s) 323, 494, 640
EcoRII CCWGG 3 cut(s) 337, 457, 645
EcoRV GATATC 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 2 cut(s) 684, 898
FaiI YATR 7 cut(s) 248, 567, 610, 682, 896, 905, 914
FaqI GGGAC 1 cut(s) 669
FatI CATG 2 cut(s) 680, 894
FbaI TGATCA 1 cut(s) 897
FblI GTMKAC 2 cut(s) 5, 600
Fnu4HI GCNGC 4 cut(s) 24, 27, 240, 694
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 4 cut(s) 24, 27, 240, 694
GluI GCNGC 4 cut(s) 24, 27, 240, 694
GsuI CTGGAG 1 cut(s) 773
HaeIII GGCC 4 cut(s) 165, 457, 576, 713
HapII CCGG 6 cut(s) 178, 243, 296, 454, 577, 847
Hin1II CATG 2 cut(s) 684, 898
HincII GTYRAC 2 cut(s) 601, 967
HindII GTYRAC 2 cut(s) 601, 967
HinfI GANTC 2 cut(s) 274, 533
HpaI GTTAAC 1 cut(s) 967
HpaII CCGG 6 cut(s) 178, 243, 296, 454, 577, 847
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 6 cut(s) 6, 184, 516, 601, 844, 967
Hpy188I TCNGA 5 cut(s) 273, 381, 394, 796, 952
Hpy188III TCNNGA 3 cut(s) 325, 686, 800
Hpy8I GTNNAC 6 cut(s) 6, 184, 516, 601, 844, 967
Hpy99I CGWCG 2 cut(s) 236, 602
HpyAV CCTTC 2 cut(s) 683, 735
HpyCH4III ACNGT 2 cut(s) 440, 585
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 6 cut(s) 23, 218, 239, 266, 320, 524
HpyF3I CTNAG 5 cut(s) 66, 71, 378, 393, 888
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 2 cut(s) 684, 898
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 897
KspAI GTTAAC 1 cut(s) 967
Kzo9I GATC 4 cut(s) 541, 721, 796, 897
LmnI GCTCC 4 cut(s) 80, 133, 802, 821
Lsp1109I GCAGC 3 cut(s) 35, 38, 251
LweI GCATC 4 cut(s) 205, 226, 227, 511
MaeII ACGT 1 cut(s) 95
MalI GATC 4 cut(s) 543, 723, 798, 899
MboI GATC 4 cut(s) 541, 721, 796, 897
MboII GAAGA 2 cut(s) 441, 444
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 3 cut(s) 101, 565, 583
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 3 cut(s) 422, 501, 613
MluNI TGGCCA 1 cut(s) 713
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 3 cut(s) 395, 503, 695
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 1 cut(s) 220
MroNI GCCGGC 1 cut(s) 242
MscI TGGCCA 1 cut(s) 713
MseI TTAA 4 cut(s) 204, 590, 768, 966
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 2 cut(s) 29, 287
MspCI CTTAAG 1 cut(s) 767
MspI CCGG 6 cut(s) 178, 243, 296, 454, 577, 847
MspR9I CCNGG 5 cut(s) 179, 339, 459, 578, 647
MunI CAATTG 1 cut(s) 422
MvaI CCWGG 3 cut(s) 339, 459, 647
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 2 cut(s) 179, 578
NdeII GATC 4 cut(s) 541, 721, 796, 897
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 684, 898
NlaIV GGNNCC 3 cut(s) 166, 632, 823
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 1 cut(s) 684
PaeR7I CTCGAG 2 cut(s) 323, 494
PciI ACATGT 1 cut(s) 680
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdiI GCCGGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 274, 533
PinAI ACCGGT 1 cut(s) 846
PkrI GCNGC 4 cut(s) 25, 28, 241, 695
PscI ACATGT 1 cut(s) 680
Psp6I CCWGG 3 cut(s) 337, 457, 645
PspGI CCWGG 3 cut(s) 337, 457, 645
PspN4I GGNNCC 3 cut(s) 166, 632, 823
PspPI GGNCC 4 cut(s) 164, 269, 404, 844
PspXI VCTCGAGB 1 cut(s) 494
PstNI CAGNNNCTG 2 cut(s) 29, 805
PsuI RGATCY 1 cut(s) 541
PvuII CAGCTG 2 cut(s) 29, 287
RsaI GTAC 2 cut(s) 625, 706
RsaNI GTAC 2 cut(s) 624, 705
SalI GTCGAC 1 cut(s) 599
SaqAI TTAA 4 cut(s) 204, 590, 768, 966
SatI GCNGC 4 cut(s) 24, 27, 240, 694
Sau3AI GATC 4 cut(s) 541, 721, 796, 897
Sau96I GGNCC 4 cut(s) 164, 269, 404, 844
ScrFI CCNGG 5 cut(s) 179, 339, 459, 578, 647
SduI GDGCHC 3 cut(s) 101, 565, 583
SfaNI GCATC 4 cut(s) 205, 226, 227, 511
Sfr274I CTCGAG 2 cut(s) 323, 494
SinI GGWCC 3 cut(s) 269, 404, 844
SlaI CTCGAG 2 cut(s) 323, 494
SmlI CTYRAG 3 cut(s) 323, 494, 767
SmoI CTYRAG 3 cut(s) 323, 494, 767
Sse9I AATT 3 cut(s) 422, 501, 613
SsiI CCGC 2 cut(s) 604, 693
StyD4I CCNGG 5 cut(s) 177, 337, 457, 576, 645
TaaI ACNGT 2 cut(s) 440, 585
TaiI ACGT 1 cut(s) 98
TaqI TCGA 7 cut(s) 110, 231, 324, 495, 600, 744, 812
TasI AATT 3 cut(s) 422, 501, 613
TauI GCSGC 1 cut(s) 696
TfiI GAWTC 2 cut(s) 274, 533
Tru1I TTAA 4 cut(s) 204, 590, 768, 966
Tru9I TTAA 4 cut(s) 204, 590, 768, 966
TscAI CASTG 5 cut(s) 259, 523, 625, 823, 937
TseI GCWGC 3 cut(s) 23, 26, 239
TspRI CASTG 5 cut(s) 259, 523, 625, 823, 937
Vha464I CTTAAG 1 cut(s) 767
VpaK11BI GGWCC 3 cut(s) 269, 404, 844
XceI RCATGY 1 cut(s) 684
XcmI CCANNNNNNNNNTGG 1 cut(s) 901
XhoI CTCGAG 2 cut(s) 323, 494
XmiI GTMKAC 2 cut(s) 5, 600
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.