FvH4_3g44360

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003999
Physical Location & Seq
Forward (+)
36996644 .. 36998509
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44360.t1

Sequence Viewer

Length: 975 bp
ATGTCTCCATTTTCATATCATGCAGTAGCAATTTTTCTCTTTGCCATTGTGTTGGGCAACTCCAACGCTCAGCTCAGCTCCACTTTTTACGACACAACATGCCCTAATATATCGAGCGTGGTTCGTAATGTGGTGGAGCAAGCTCAAGAGAATGATATTCGTATTGCCGCCAAACTCATCCGGGTTCACTTCCACGACTGCTTCGTCAATGGGTGTGATGCATCACTTTTGCTCGATGATGCAGACGGTATAGACAGCGAAAAGAATGGAGCTCCGAATCTATCCACAGATGGATATGCTGTGATTGATGACATCAAAACTGCACTCGAGAATGTTTGCCCTGGTGTTGTCTCCTGTGCTGATATTGTCGCTCTTGCTTCTCAGATACTCGTTTCTGAGAATGGAGGACCAACTTGGGAAGTTCAATTAGGAAGAAGAGACAGTAGGACAGCCAACCGAGCTGGTACTACTGCCATTCCAAGCCCTTTTGAAACCCTTGAACAAATTGCCCAAAAGTTCACTGATGCAGGACTTGATTCAACAGATCTCGTTGCTTTATCAGGTGCTCATACATTCGGCCGGGCAAGGTGTTCAACTTTCGTGCACCGCCTATACGATTTCAACGGTACCGGGAGCCCTGACCCGAGCATAGACACAACCTACTTGGGAACCCTACAACAAACATGTCCCAACGGCGGTGACGGAGGTACATTGGCCAACCTTGATCCTACTACTCCCAATGGCTTCGACAAAAACTACTTCACAAACCTTCAGAACAAGCAGGGGCTTCTGCAGACGGATCAGGAGCTGTTCTCGACCAGCGGAGCCGACACTGTTTCCATTGTCGACCGGTTTGCTAATAGCGAGAGCGACTTCTTTGACAGCTTTGCCAAGTCCATGATCAGTATGGGAAATATTAAAGTTTTGACGGGCAGTGATGGAGAGATTAGGACTGATTGTAAAAGAGTTAACTAA

Protein Analysis

325

Amino Acids

34.73

Weight (kDa)

4.49

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 288 1.5e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
Acc65I GGTACC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 846
AciI CCGC 4 cut(s) 168, 607, 696, 822
AclWI GGATC 2 cut(s) 719, 807
AcoI YGGCCR 2 cut(s) 577, 714
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 3 cut(s) 466, 628, 709
AfiI CCNNNNNNNGG 1 cut(s) 695
AflIII ACRYGT 1 cut(s) 683
AgeI ACCGGT 1 cut(s) 849
AgsI TTSAA 6 cut(s) 425, 491, 500, 540, 594, 622
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 7 cut(s) 73, 78, 143, 272, 461, 808, 885
AluI AGCT 7 cut(s) 73, 78, 143, 272, 461, 808, 885
Alw21I GWGCWC 3 cut(s) 274, 568, 606
Alw26I GTCTC 3 cut(s) 9, 355, 432
Alw44I GTGCAC 1 cut(s) 602
AlwI GGATC 2 cut(s) 719, 807
AlwNI CAGNNNCTG 1 cut(s) 808
Ama87I CYCGRG 2 cut(s) 326, 643
AoxI GGCC 2 cut(s) 577, 714
ApaLI GTGCAC 1 cut(s) 602
AsiGI ACCGGT 1 cut(s) 849
Asp718I GGTACC 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 3 cut(s) 182, 581, 631
AsuHPI GGTGA 1 cut(s) 710
AvaI CYCGRG 2 cut(s) 326, 643
AvaII GGWCC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 606
BalI TGGCCA 1 cut(s) 716
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 2 cut(s) 274, 638
Bbv12I GWGCWC 3 cut(s) 274, 568, 606
BccI CCATC 2 cut(s) 284, 932
BceAI ACGGC 1 cut(s) 709
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 900
BcnI CCSGG 3 cut(s) 182, 581, 631
BcoDI GTCTC 3 cut(s) 9, 355, 432
BfmI CTRYAG 1 cut(s) 791
BglII AGATCT 1 cut(s) 544
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 2 cut(s) 69, 74
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 4 cut(s) 182, 342, 581, 631
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 2 cut(s) 326, 643
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 4 cut(s) 628, 635, 670, 826
BmrFI CCNGG 4 cut(s) 182, 342, 581, 631
BmsI GCATC 4 cut(s) 208, 229, 230, 514
BplI GAGNNNNNCTC 2 cut(s) 797, 829
Bpu1102I GCTNAGC 2 cut(s) 69, 74
BpuEI CTTGAG 1 cut(s) 129
BpuMI CCSGG 3 cut(s) 182, 581, 631
BsaJI CCNNGG 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 849
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse118I RCCGGY 1 cut(s) 849
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 4 cut(s) 83, 88, 387, 395
BseSI GKGCMC 1 cut(s) 606
BseX3I CGGCCG 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 306
Bsh1285I CGRYCG 2 cut(s) 580, 850
BshFI GGCC 2 cut(s) 579, 716
BshNI GGYRCC 1 cut(s) 626
BshTI ACCGGT 1 cut(s) 849
BsiEI CGRYCG 2 cut(s) 580, 850
BsiHKAI GWGCWC 3 cut(s) 274, 568, 606
BsiHKCI CYCGRG 2 cut(s) 326, 643
BsiSI CCGG 4 cut(s) 181, 580, 630, 850
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 3 cut(s) 9, 355, 432
BsmFI GGGAC 1 cut(s) 672
BsnI GGCC 2 cut(s) 579, 716
BsoBI CYCGRG 2 cut(s) 326, 643
Bsp1286I GDGCHC 4 cut(s) 274, 568, 606, 638
Bsp143I GATC 4 cut(s) 544, 724, 799, 900
Bsp1720I GCTNAGC 2 cut(s) 69, 74
BspACI CCGC 4 cut(s) 168, 607, 696, 822
BspANI GGCC 2 cut(s) 579, 716
BspCNI CTCAG 4 cut(s) 82, 87, 388, 394
BspLI GGNNCC 4 cut(s) 628, 635, 670, 826
BspMAI CTGCAG 1 cut(s) 795
BspPI GGATC 2 cut(s) 719, 807
BspT107I GGYRCC 1 cut(s) 626
BsrFI RCCGGY 1 cut(s) 849
BssAI RCCGGY 1 cut(s) 849
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 4 cut(s) 544, 724, 799, 900
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 4 cut(s) 248, 443, 626, 835
Bst6I CTCTTC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 4 cut(s) 69, 74, 381, 396
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 4 cut(s) 547, 727, 802, 903
BstMAI GTCTC 3 cut(s) 9, 355, 432
BstMBI GATC 4 cut(s) 544, 724, 799, 900
BstMCI CGRYCG 2 cut(s) 580, 850
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 2 cut(s) 102, 687
BstSCI CCNGG 4 cut(s) 180, 340, 579, 629
BstSFI CTRYAG 1 cut(s) 791
BstSLI GKGCMC 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 1 cut(s) 544
BstZI CGGCCG 1 cut(s) 577
BsuRI GGCC 2 cut(s) 579, 716
BtsCI GGATG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 940
BtsIMutI CAGTG 3 cut(s) 519, 831, 940
Cac8I GCNNGC 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 808
Cfr10I RCCGGY 1 cut(s) 849
Cfr13I GGNCC 1 cut(s) 407
Csp6I GTAC 3 cut(s) 465, 627, 708
CspAI ACCGGT 1 cut(s) 849
CviAII CATG 4 cut(s) 20, 99, 684, 898
CviQI GTAC 3 cut(s) 465, 627, 708
DdeI CTNAG 4 cut(s) 69, 74, 381, 396
DpnI GATC 4 cut(s) 546, 726, 801, 902
DpnII GATC 4 cut(s) 544, 724, 799, 900
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 2 cut(s) 577, 714
EagI CGGCCG 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 1 cut(s) 272
EclXI CGGCCG 1 cut(s) 577
Eco24I GRGCYC 2 cut(s) 274, 638
Eco47I GGWCC 1 cut(s) 407
Eco52I CGGCCG 1 cut(s) 577
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 2 cut(s) 326, 643
EcoICRI GAGCTC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 274, 638
FaeI CATG 4 cut(s) 23, 102, 687, 901
FaqI GGGAC 1 cut(s) 672
FatI CATG 4 cut(s) 19, 98, 683, 897
FbaI TGATCA 1 cut(s) 900
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 2 cut(s) 274, 638
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 2 cut(s) 579, 716
HapII CCGG 4 cut(s) 181, 580, 630, 850
Hin1II CATG 4 cut(s) 23, 102, 687, 901
HincII GTYRAC 2 cut(s) 847, 970
HindII GTYRAC 2 cut(s) 847, 970
HinfI GANTC 2 cut(s) 277, 536
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 4 cut(s) 181, 580, 630, 850
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 5 cut(s) 187, 519, 604, 847, 970
Hpy188I TCNGA 4 cut(s) 276, 384, 397, 774
Hpy188III TCNNGA 4 cut(s) 146, 328, 803, 814
Hpy8I GTNNAC 5 cut(s) 187, 519, 604, 847, 970
HpyAV CCTTC 1 cut(s) 779
HpyCH4III ACNGT 4 cut(s) 248, 443, 626, 835
HpyCH4V TGCA 7 cut(s) 23, 221, 242, 323, 527, 604, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 4 cut(s) 69, 74, 381, 396
Hsp92II CATG 4 cut(s) 23, 102, 687, 901
KpnI GGTACC 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 900
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 4 cut(s) 544, 724, 799, 900
LmnI GCTCC 7 cut(s) 83, 136, 269, 277, 633, 805, 824
LweI GCATC 4 cut(s) 208, 229, 230, 514
MaeIII GTNAC 1 cut(s) 698
MalI GATC 4 cut(s) 546, 726, 801, 902
MboI GATC 4 cut(s) 544, 724, 799, 900
MboII GAAGA 2 cut(s) 444, 447
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 4 cut(s) 274, 568, 606, 638
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 3 cut(s) 30, 425, 504
MluNI TGGCCA 1 cut(s) 716
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 398, 698
Mox20I TGGCCA 1 cut(s) 716
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 716
MseI TTAA 2 cut(s) 918, 969
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 822
MspI CCGG 4 cut(s) 181, 580, 630, 850
MspR9I CCNGG 4 cut(s) 182, 342, 581, 631
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 458
NciI CCSGG 3 cut(s) 182, 581, 631
NdeII GATC 4 cut(s) 544, 724, 799, 900
NlaIII CATG 4 cut(s) 23, 102, 687, 901
NlaIV GGNNCC 4 cut(s) 628, 635, 670, 826
NmuCI GTSAC 1 cut(s) 698
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 2 cut(s) 102, 687
PaeR7I CTCGAG 1 cut(s) 326
PciI ACATGT 1 cut(s) 683
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 2 cut(s) 277, 536
PinAI ACCGGT 1 cut(s) 849
PkrI GCNGC 1 cut(s) 169
PscI ACATGT 1 cut(s) 683
Psp124BI GAGCTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 4 cut(s) 628, 635, 670, 826
PspPI GGNCC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 795
PstNI CAGNNNCTG 1 cut(s) 808
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 3 cut(s) 466, 628, 709
RsaNI GTAC 3 cut(s) 465, 627, 708
SacI GAGCTC 1 cut(s) 274
SalI GTCGAC 1 cut(s) 845
SaqAI TTAA 2 cut(s) 918, 969
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 4 cut(s) 544, 724, 799, 900
Sau96I GGNCC 1 cut(s) 407
ScrFI CCNGG 4 cut(s) 182, 342, 581, 631
SduI GDGCHC 4 cut(s) 274, 568, 606, 638
SfaNI GCATC 4 cut(s) 208, 229, 230, 514
SfcI CTRYAG 1 cut(s) 791
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 326
SmlI CTYRAG 2 cut(s) 144, 326
SmoI CTYRAG 2 cut(s) 144, 326
Sse9I AATT 3 cut(s) 30, 425, 504
SsiI CCGC 4 cut(s) 168, 607, 696, 822
SspI AATATT 1 cut(s) 916
SstI GAGCTC 1 cut(s) 274
StyD4I CCNGG 4 cut(s) 180, 340, 579, 629
TaaI ACNGT 4 cut(s) 248, 443, 626, 835
TaqI TCGA 6 cut(s) 113, 234, 327, 747, 815, 846
TasI AATT 3 cut(s) 30, 425, 504
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 277, 536
Tru1I TTAA 2 cut(s) 918, 969
Tru9I TTAA 2 cut(s) 918, 969
TscAI CASTG 3 cut(s) 526, 838, 940
TseFI GTSAC 1 cut(s) 698
Tsp45I GTSAC 1 cut(s) 698
TspGWI ACGGA 2 cut(s) 717, 812
TspRI CASTG 3 cut(s) 526, 838, 940
VneI GTGCAC 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 407
XceI RCATGY 2 cut(s) 102, 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 846
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.