Rh5BG547400

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
86928852 .. 86944296
15445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG547400.1

Sequence Viewer

Length: 1140 bp
ATGCGAATGGCTGCTTCTTTGCTTCGGCTTCACTTCCACGACTGCTTTGTCAACGGTTGTGATGCGTCGATACTGCTCGATTTACCTGATGGTGAGAAGTCTGCCTTTCCGAACGTGAATTCAGCGAGAGGGTTTGAAGTTATCGATGCAATCAAGAGCTCCGTGGAGAGTGCATGTAGTGGAGTTGTTTCTTGTGCTGATATACTAACCATAGCTGCCCGAGATTCTGTGGTCTTACTCAGCTCCACTTTTTACGATACAACGTGCCCTAATGTGTCGAGCGTGGTTCGTAATGTGGTGGAGCAAGCTCAACAGAATGATATTCGTATTGGCGCCAAACTCATCCGGGTTCACTTCCACGACTGCTTCGTCAATGGGTGTGATGCATCACTTTTGCTCGACGATGCAGACGACATAGACAGTGAAAAAAATGCAGTTCCGAATCAATCCACAGCTGGATATCCTGTGATTGATGACATCAAAACTGCACTCGAGAATGTTTGCCCTGGTGTTGTCTCCTGTGCTGATATTGTAGCTCTTGCTTCTCAGATACTCGTTTCTGAGAATGGAGGACCAACTTGGGAAGTTCAATTGGGAAGAAGAGATAGTAGGACAGCCAACCGGGCTGGTACTACTGCCATTCCAAGCCCTTTTGAAACCCTTGCGCAAATTACCAAAAAGTTCAGTGATGCAGGACTTGATTCCACAGATCTCGTTGCTTTGTCAGGTGCTCATACATTTGGCCGGGCACAGTGTTCAACTTTCGTCCACCGCCTGTACAATTTCAGTGGTACGGGGAACCCCGACCCGAGCCTGGACACAACCTACTTGGAAACCCTACGCCAAACATGCCCCGAAGGCGGCAATGGAGGTACATTGGCCAACCTTGATCCTTCTACGCCCAATGGCTTCGACAACAACTACTTCACAAACCTTCAGAACAAGCAGGGGCTTCTCCAGACTGATCAGGAGCTGTTTTCGACCAGTGGAGCCGACACTAGTTCCATTGTGGACCGGTTTGCTAATAGCCAAAGCGACTTCTTTGACACTTTCGCTAAGTCCATGACCAATATGGGAAATATAAAACCTTTGACGGGCAGTGATGGAGAAATTAGGTCTGATTGTAAAAGAGTTAACTAA

Protein Analysis

379

Amino Acids

40.55

Weight (kDa)

4.59

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 86 2.4e-31 Peroxidase
peroxidase PF00141 96 - 343 2.4e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 47, 368
Acc16I TGCGCA 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 332
AciI CCGC 2 cut(s) 772, 861
AclWI GGATC 1 cut(s) 884
AcoI YGGCCR 2 cut(s) 742, 879
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 920
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 4 cut(s) 631, 779, 793, 874
AfiI CCNNNNNNNGG 3 cut(s) 814, 860, 1094
AgeI ACCGGT 1 cut(s) 1014
AgsI TTSAA 4 cut(s) 137, 590, 656, 759
AhlI ACTAGT 1 cut(s) 998
AjnI CCWGG 2 cut(s) 505, 813
AluBI AGCT 7 cut(s) 159, 215, 243, 308, 455, 536, 973
AluI AGCT 7 cut(s) 159, 215, 243, 308, 455, 536, 973
Alw21I GWGCWC 2 cut(s) 161, 733
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 1 cut(s) 884
AlwNI CAGNNNCTG 1 cut(s) 973
Ama87I CYCGRG 3 cut(s) 219, 491, 808
AoxI GGCC 2 cut(s) 742, 879
ApeKI GCWGC 2 cut(s) 11, 215
ApoI RAATTY 1 cut(s) 118
AsiGI ACCGGT 1 cut(s) 1014
AspLEI GCGC 2 cut(s) 335, 667
AspS9I GGNCC 2 cut(s) 572, 1012
AsuC2I CCSGG 3 cut(s) 347, 623, 746
AsuHPI GGTGA 1 cut(s) 104
AvaI CYCGRG 3 cut(s) 219, 491, 808
AvaII GGWCC 2 cut(s) 572, 1012
BaeGI GKGCMC 2 cut(s) 269, 751
BalI TGGCCA 1 cut(s) 881
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 161, 733
BbvI GCAGC 1 cut(s) 202
BccI CCATC 2 cut(s) 83, 1097
BciT130I CCWGG 2 cut(s) 507, 815
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 3 cut(s) 347, 623, 746
BcoDI GTCTC 1 cut(s) 520
BcuI ACTAGT 1 cut(s) 998
BfaI CTAG 1 cut(s) 999
BfoI RGCGCY 1 cut(s) 336
BglI GCCNNNNNGGC 2 cut(s) 623, 858
BglII AGATCT 1 cut(s) 709
BisI GCNGC 3 cut(s) 12, 216, 862
BlsI GCNGC 3 cut(s) 13, 217, 863
Bme1390I CCNGG 5 cut(s) 347, 507, 623, 746, 815
Bme18I GGWCC 2 cut(s) 572, 1012
BmeT110I CYCGRG 3 cut(s) 219, 491, 808
BmgT120I GGNCC 2 cut(s) 572, 1012
BmiI GGNNCC 3 cut(s) 334, 800, 991
BmrFI CCNGG 5 cut(s) 347, 507, 623, 746, 815
BmsI GCATC 6 cut(s) 52, 136, 373, 394, 395, 679
BpmI CTGGAG 1 cut(s) 941
BpuMI CCSGG 3 cut(s) 347, 623, 746
Bsa29I ATCGAT 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 162, 505
BsaWI WCCGGW 1 cut(s) 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 814, 860, 1094
Bse118I RCCGGY 1 cut(s) 1014
Bse1I ACTGG 1 cut(s) 984
Bse3DI GCAATG 1 cut(s) 871
BseBI CCWGG 2 cut(s) 507, 815
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 162, 505
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 3 cut(s) 814, 860, 1094
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 3 cut(s) 253, 552, 560
BseNI ACTGG 1 cut(s) 984
BseSI GKGCMC 2 cut(s) 269, 751
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 2 cut(s) 744, 881
BshNI GGYRCC 1 cut(s) 332
BshTI ACCGGT 1 cut(s) 1014
BshVI ATCGAT 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 161, 733
BsiHKCI CYCGRG 3 cut(s) 219, 491, 808
BsiSI CCGG 4 cut(s) 346, 622, 745, 1015
BslI CCNNNNNNNGG 3 cut(s) 814, 860, 1094
BsmAI GTCTC 1 cut(s) 520
BsnI GGCC 2 cut(s) 744, 881
BsoBI CYCGRG 3 cut(s) 219, 491, 808
Bsp1286I GDGCHC 4 cut(s) 161, 269, 733, 751
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 3 cut(s) 709, 889, 964
BspACI CCGC 2 cut(s) 772, 861
BspANI GGCC 2 cut(s) 744, 881
BspCNI CTCAG 3 cut(s) 252, 553, 559
BspDI ATCGAT 1 cut(s) 144
BspLI GGNNCC 3 cut(s) 334, 800, 991
BspPI GGATC 1 cut(s) 884
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 871
BsrFI RCCGGY 1 cut(s) 1014
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 1 cut(s) 984
BssAI RCCGGY 1 cut(s) 1014
BssECI CCNNGG 2 cut(s) 162, 505
BssMI GATC 3 cut(s) 709, 889, 964
BssNI GRCGYC 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 507, 815
Bst4CI ACNGT 3 cut(s) 56, 422, 753
Bst6I CTCTTC 1 cut(s) 595
BstACI GRCGYC 1 cut(s) 333
BstAUI TGTACA 1 cut(s) 777
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 239, 546, 561, 1056
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 342
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 335, 667
BstKTI GATC 3 cut(s) 712, 892, 967
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 3 cut(s) 709, 889, 964
BstMWI GCNNNNNNNGC 3 cut(s) 623, 849, 858
BstNI CCWGG 2 cut(s) 507, 815
BstNSI RCATGY 2 cut(s) 177, 852
BstSCI CCNGG 5 cut(s) 345, 505, 621, 744, 813
BstSLI GKGCMC 2 cut(s) 269, 751
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 2 cut(s) 744, 881
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 1105
BtsIMutI CAGTG 6 cut(s) 427, 691, 758, 793, 991, 1105
Cac8I GCNNGC 1 cut(s) 306
CaiI CAGNNNCTG 1 cut(s) 973
CfoI GCGC 2 cut(s) 335, 667
Cfr10I RCCGGY 1 cut(s) 1014
Cfr13I GGNCC 2 cut(s) 572, 1012
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 54
Csp6I GTAC 4 cut(s) 630, 778, 792, 873
CspAI ACCGGT 1 cut(s) 1014
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 3 cut(s) 174, 849, 1063
CviQI GTAC 4 cut(s) 630, 778, 792, 873
DdeI CTNAG 4 cut(s) 239, 546, 561, 1056
DinI GGCGCC 1 cut(s) 334
DpnI GATC 3 cut(s) 711, 891, 966
DpnII GATC 3 cut(s) 709, 889, 964
DrdI GACNNNNNNGTC 2 cut(s) 47, 368
DseDI GACNNNNNNGTC 2 cut(s) 47, 368
EaeI YGGCCR 2 cut(s) 742, 879
Eam1104I CTCTTC 1 cut(s) 595
EarI CTCTTC 1 cut(s) 595
Ecl136II GAGCTC 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 572, 1012
Eco53kI GAGCTC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 920
Eco88I CYCGRG 3 cut(s) 219, 491, 808
EcoICRI GAGCTC 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 505, 813
EcoRV GATATC 1 cut(s) 461
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 334
EheI GGCGCC 1 cut(s) 334
FaeI CATG 3 cut(s) 177, 852, 1066
FaiI YATR 9 cut(s) 175, 203, 212, 416, 735, 850, 1064, 1073, 1082
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 3 cut(s) 173, 848, 1062
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 3 cut(s) 12, 216, 862
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 12, 216, 862
FspBI CTAG 1 cut(s) 999
FspI TGCGCA 1 cut(s) 666
GlaI GCGC 2 cut(s) 334, 666
GluI GCNGC 3 cut(s) 12, 216, 862
GsuI CTGGAG 1 cut(s) 941
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 2 cut(s) 744, 881
HapII CCGG 4 cut(s) 346, 622, 745, 1015
HgaI GACGC 1 cut(s) 54
HhaI GCGC 2 cut(s) 335, 667
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 3 cut(s) 177, 852, 1066
Hin6I GCGC 2 cut(s) 333, 665
HinP1I GCGC 2 cut(s) 333, 665
HincII GTYRAC 2 cut(s) 52, 1135
HindII GTYRAC 2 cut(s) 52, 1135
HinfI GANTC 3 cut(s) 224, 442, 701
HpaI GTTAAC 1 cut(s) 1135
HpaII CCGG 4 cut(s) 346, 622, 745, 1015
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 5 cut(s) 52, 352, 769, 1012, 1135
Hpy188I TCNGA 6 cut(s) 111, 441, 549, 562, 939, 1120
Hpy188III TCNNGA 4 cut(s) 154, 493, 958, 968
Hpy8I GTNNAC 5 cut(s) 52, 352, 769, 1012, 1135
Hpy99I CGWCG 2 cut(s) 70, 404
HpyAV CCTTC 3 cut(s) 851, 903, 944
HpyCH4III ACNGT 3 cut(s) 56, 422, 753
HpyCH4IV ACGT 2 cut(s) 114, 263
HpyCH4V TGCA 7 cut(s) 149, 173, 386, 407, 434, 488, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 623, 849, 858
HpyF3I CTNAG 4 cut(s) 239, 546, 561, 1056
HpySE526I ACGT 2 cut(s) 114, 263
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 3 cut(s) 177, 852, 1066
HspAI GCGC 2 cut(s) 333, 665
KasI GGCGCC 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 964
KspAI GTTAAC 1 cut(s) 1135
Kzo9I GATC 3 cut(s) 709, 889, 964
LmnI GCTCC 5 cut(s) 164, 248, 301, 970, 989
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 6 cut(s) 52, 136, 373, 394, 395, 679
MaeI CTAG 1 cut(s) 999
MaeII ACGT 2 cut(s) 114, 263
MalI GATC 3 cut(s) 711, 891, 966
MboI GATC 3 cut(s) 709, 889, 964
MboII GAAGA 2 cut(s) 609, 612
MfeI CAATTG 1 cut(s) 590
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 4 cut(s) 161, 269, 733, 751
MlsI TGGCCA 1 cut(s) 881
MluCI AATT 5 cut(s) 118, 590, 669, 781, 1110
MluNI TGGCCA 1 cut(s) 881
Mly113I GGCGCC 1 cut(s) 333
MnlI CCTC 3 cut(s) 122, 563, 863
Mox20I TGGCCA 1 cut(s) 881
Mph1103I ATGCAT 1 cut(s) 388
MscI TGGCCA 1 cut(s) 881
MseI TTAA 1 cut(s) 1134
Msp20I TGGCCA 1 cut(s) 881
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 4 cut(s) 346, 622, 745, 1015
MspR9I CCNGG 5 cut(s) 347, 507, 623, 746, 815
MunI CAATTG 1 cut(s) 590
MvaI CCWGG 2 cut(s) 507, 815
MwoI GCNNNNNNNGC 3 cut(s) 623, 849, 858
NarI GGCGCC 1 cut(s) 333
NciI CCSGG 3 cut(s) 347, 623, 746
NdeII GATC 3 cut(s) 709, 889, 964
NlaIII CATG 3 cut(s) 177, 852, 1066
NlaIV GGNNCC 3 cut(s) 334, 800, 991
NsbI TGCGCA 1 cut(s) 666
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 2 cut(s) 177, 852
PaeR7I CTCGAG 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 408
PfeI GAWTC 3 cut(s) 224, 442, 701
PinAI ACCGGT 1 cut(s) 1014
PkrI GCNGC 3 cut(s) 13, 217, 863
PluTI GGCGCC 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 505, 813
PspGI CCWGG 2 cut(s) 505, 813
PspN4I GGNNCC 3 cut(s) 334, 800, 991
PspPI GGNCC 2 cut(s) 572, 1012
PstNI CAGNNNCTG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 709
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 4 cut(s) 631, 779, 793, 874
RsaNI GTAC 4 cut(s) 630, 778, 792, 873
SacI GAGCTC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 1134
SatI GCNGC 3 cut(s) 12, 216, 862
Sau3AI GATC 3 cut(s) 709, 889, 964
Sau96I GGNCC 2 cut(s) 572, 1012
ScrFI CCNGG 5 cut(s) 347, 507, 623, 746, 815
SduI GDGCHC 4 cut(s) 161, 269, 733, 751
SfaNI GCATC 6 cut(s) 52, 136, 373, 394, 395, 679
SfoI GGCGCC 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 491
SinI GGWCC 2 cut(s) 572, 1012
SlaI CTCGAG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SpeI ACTAGT 1 cut(s) 998
Sse9I AATT 5 cut(s) 118, 590, 669, 781, 1110
SsiI CCGC 2 cut(s) 772, 861
SspDI GGCGCC 1 cut(s) 332
SspMI CTAG 1 cut(s) 999
SstI GAGCTC 1 cut(s) 161
StyD4I CCNGG 5 cut(s) 345, 505, 621, 744, 813
TaaI ACNGT 3 cut(s) 56, 422, 753
TaiI ACGT 2 cut(s) 117, 266
TaqI TCGA 8 cut(s) 68, 78, 144, 278, 399, 492, 912, 980
TasI AATT 5 cut(s) 118, 590, 669, 781, 1110
TatI WGTACW 1 cut(s) 777
TauI GCSGC 1 cut(s) 864
TfiI GAWTC 3 cut(s) 224, 442, 701
Tru1I TTAA 1 cut(s) 1134
Tru9I TTAA 1 cut(s) 1134
TscAI CASTG 6 cut(s) 427, 691, 758, 793, 991, 1105
TseI GCWGC 2 cut(s) 11, 215
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 6 cut(s) 427, 691, 758, 793, 991, 1105
VpaK11BI GGWCC 2 cut(s) 572, 1012
XapI RAATTY 1 cut(s) 118
XceI RCATGY 2 cut(s) 177, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XhoI CTCGAG 1 cut(s) 491
XspI CTAG 1 cut(s) 999
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.