RH5DG557700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0003999
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG557700.1

Sequence Viewer

Length: 978 bp
ATGTCTACTTTTTCATATGTTGCAGCAGCAGCAATTGTTCTCTTTACCCTTGTGTTGGGGCACTCCAATGCTCAGCTCAGCTCCACTTTTTACGACACAACGTGCCCTAATGTGTCGAGGGTGGTTCGTAATGTGGTGGAGAAAGCTCAACAGAATGATATTCGTATTGGCGCCAAACTCATCCGGGTTCACTTCCACGACTGCTTCGTCAATGGGTGTGATGCATCACTTTTGCTCGACGATGCAGACGACATAGACAGCGAAAAAAATGCAGTTCCGAATCAATCCACAGCTGGATATCCTGTGATTGATGACATCAAAACTGCACTCGAGAATGTTTGCCCTGGTGTTGTCTCCTGTGCTGATATTGTAGCTCTTGCTTCTCAGATACTCGTTTCTGAGAATGGAGGACCAACTTGGGAAGTTCAATTGGGAAGAAGAGACAGTAGGACAGCCAACCGGGCTGGTACTACTGCCATTCCAAGCCCTTTTGAAACCCTTGCGCAAATTACCAAAAAGTTCACTGATGCAGGACTTGATTCCACAGATCTCGTTGCTTTGTCAGGTGCTCATACATTTGGCCGGGCACAGTGTTCAACTTTCGTCCACCGCCTATACAATTTCAGTGGTACGGGGAACCCCGACCCGAGCCTGGACACAACCTACTTGGAAACCCTACGCCAAACATGCCCCGAAGGCGGCAATGGAGGTACATTGGCCAACCTTGATCCTTCTACGTCCAATGGCTTCGACAACAACTACTTCACAAACCTTCAGAACAAGCAGGGGCTTCTCCAGACGGATCAGGAGCTGTTTTCGACCAGTGGAGCCGACACTATTTCCATTGTGGACCGGTTTGCTAATAGCCAAAGCGACTTCTTTGACACTTTTGCTAAGTCCATGATCAATATGGGAAATATAAAACCTTTGACGGGCAGTGATGGAGAGATAAGGTCTGATTGTAAAAGAGTTAACTAA

Protein Analysis

325

Amino Acids

34.93

Weight (kDa)

4.72

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 289 1.1e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
Acc16I TGCGCA 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 610, 699
AclWI GGATC 2 cut(s) 722, 810
AcoI YGGCCR 2 cut(s) 580, 717
AcuI CTGAAG 1 cut(s) 758
AcyI GRCGYC 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 102
AfaI GTAC 3 cut(s) 469, 631, 712
AfiI CCNNNNNNNGG 4 cut(s) 55, 652, 698, 932
AgeI ACCGGT 1 cut(s) 852
AgsI TTSAA 3 cut(s) 428, 494, 597
AjnI CCWGG 2 cut(s) 343, 651
AluBI AGCT 6 cut(s) 76, 81, 146, 293, 374, 811
AluI AGCT 6 cut(s) 76, 81, 146, 293, 374, 811
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 2 cut(s) 358, 435
AlwI GGATC 2 cut(s) 722, 810
AlwNI CAGNNNCTG 1 cut(s) 811
Ama87I CYCGRG 2 cut(s) 329, 646
AoxI GGCC 2 cut(s) 580, 717
ApeKI GCWGC 3 cut(s) 23, 26, 29
AsiGI ACCGGT 1 cut(s) 852
AspLEI GCGC 2 cut(s) 173, 505
AspS9I GGNCC 2 cut(s) 410, 850
AsuC2I CCSGG 3 cut(s) 185, 461, 584
AvaI CYCGRG 2 cut(s) 329, 646
AvaII GGWCC 2 cut(s) 410, 850
BaeGI GKGCMC 3 cut(s) 63, 107, 589
BalI TGGCCA 1 cut(s) 719
BanI GGYRCC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 3 cut(s) 35, 38, 41
BccI CCATC 1 cut(s) 935
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 2 cut(s) 345, 653
BclI TGATCA 1 cut(s) 903
BcnI CCSGG 3 cut(s) 185, 461, 584
BcoDI GTCTC 2 cut(s) 358, 435
BfoI RGCGCY 1 cut(s) 174
BglI GCCNNNNNGGC 2 cut(s) 461, 696
BglII AGATCT 1 cut(s) 547
BisI GCNGC 4 cut(s) 24, 27, 30, 700
BlpI GCTNAGC 2 cut(s) 72, 77
BlsI GCNGC 4 cut(s) 25, 28, 31, 701
Bme1390I CCNGG 5 cut(s) 185, 345, 461, 584, 653
Bme18I GGWCC 2 cut(s) 410, 850
BmeT110I CYCGRG 2 cut(s) 329, 646
BmgT120I GGNCC 2 cut(s) 410, 850
BmiI GGNNCC 3 cut(s) 172, 638, 829
BmrFI CCNGG 5 cut(s) 185, 345, 461, 584, 653
BmsI GCATC 4 cut(s) 211, 232, 233, 517
BpmI CTGGAG 1 cut(s) 779
Bpu1102I GCTNAGC 2 cut(s) 72, 77
BpuMI CCSGG 3 cut(s) 185, 461, 584
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 343
BsaWI WCCGGW 1 cut(s) 852
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 652, 698, 932
Bse118I RCCGGY 1 cut(s) 852
Bse1I ACTGG 1 cut(s) 822
Bse3DI GCAATG 1 cut(s) 709
BseBI CCWGG 2 cut(s) 345, 653
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 4 cut(s) 55, 652, 698, 932
BseMI GCAATG 1 cut(s) 709
BseMII CTCAG 4 cut(s) 86, 91, 390, 398
BseNI ACTGG 1 cut(s) 822
BseSI GKGCMC 3 cut(s) 63, 107, 589
BseXI GCAGC 3 cut(s) 35, 38, 41
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 2 cut(s) 582, 719
BshNI GGYRCC 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 852
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 2 cut(s) 329, 646
BsiSI CCGG 4 cut(s) 184, 460, 583, 853
BslI CCNNNNNNNGG 4 cut(s) 55, 652, 698, 932
BsmAI GTCTC 2 cut(s) 358, 435
BsnI GGCC 2 cut(s) 582, 719
BsoBI CYCGRG 2 cut(s) 329, 646
Bsp1286I GDGCHC 4 cut(s) 63, 107, 571, 589
Bsp143I GATC 4 cut(s) 547, 727, 802, 903
Bsp1720I GCTNAGC 2 cut(s) 72, 77
BspACI CCGC 2 cut(s) 610, 699
BspANI GGCC 2 cut(s) 582, 719
BspCNI CTCAG 4 cut(s) 85, 90, 391, 397
BspLI GGNNCC 3 cut(s) 172, 638, 829
BspPI GGATC 2 cut(s) 722, 810
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 852
BsrI ACTGG 1 cut(s) 822
BssAI RCCGGY 1 cut(s) 852
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 4 cut(s) 547, 727, 802, 903
BssNI GRCGYC 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 345, 653
Bst4CI ACNGT 2 cut(s) 446, 591
Bst6I CTCTTC 1 cut(s) 433
BstACI GRCGYC 1 cut(s) 171
BstDEI CTNAG 5 cut(s) 72, 77, 384, 399, 894
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 173, 505
BstKTI GATC 4 cut(s) 550, 730, 805, 906
BstMAI GTCTC 2 cut(s) 358, 435
BstMBI GATC 4 cut(s) 547, 727, 802, 903
BstMWI GCNNNNNNNGC 4 cut(s) 29, 461, 687, 696
BstNI CCWGG 2 cut(s) 345, 653
BstNSI RCATGY 1 cut(s) 690
BstSCI CCNGG 5 cut(s) 183, 343, 459, 582, 651
BstSLI GKGCMC 3 cut(s) 63, 107, 589
BstV1I GCAGC 3 cut(s) 35, 38, 41
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 2 cut(s) 582, 719
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 5 cut(s) 522, 596, 631, 829, 943
CaiI CAGNNNCTG 1 cut(s) 811
CfoI GCGC 2 cut(s) 173, 505
Cfr10I RCCGGY 1 cut(s) 852
Cfr13I GGNCC 2 cut(s) 410, 850
Csp6I GTAC 3 cut(s) 468, 630, 711
CspAI ACCGGT 1 cut(s) 852
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 2 cut(s) 687, 901
CviQI GTAC 3 cut(s) 468, 630, 711
DdeI CTNAG 5 cut(s) 72, 77, 384, 399, 894
DinI GGCGCC 1 cut(s) 172
DpnI GATC 4 cut(s) 549, 729, 804, 905
DpnII GATC 4 cut(s) 547, 727, 802, 903
DraIII CACNNNGTG 1 cut(s) 102
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 2 cut(s) 580, 717
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco32I GATATC 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 410, 850
Eco57I CTGAAG 1 cut(s) 758
Eco88I CYCGRG 2 cut(s) 329, 646
EcoRII CCWGG 2 cut(s) 343, 651
EcoRV GATATC 1 cut(s) 299
EcoT22I ATGCAT 1 cut(s) 226
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
FaeI CATG 2 cut(s) 690, 904
FaiI YATR 9 cut(s) 16, 18, 254, 573, 616, 688, 902, 911, 920
FatI CATG 2 cut(s) 686, 900
FauNDI CATATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 903
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 24, 27, 30, 700
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 4 cut(s) 24, 27, 30, 700
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 2 cut(s) 172, 504
GluI GCNGC 4 cut(s) 24, 27, 30, 700
GsuI CTGGAG 1 cut(s) 779
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 2 cut(s) 582, 719
HapII CCGG 4 cut(s) 184, 460, 583, 853
HhaI GCGC 2 cut(s) 173, 505
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 2 cut(s) 690, 904
Hin6I GCGC 2 cut(s) 171, 503
HinP1I GCGC 2 cut(s) 171, 503
HincII GTYRAC 1 cut(s) 973
HindII GTYRAC 1 cut(s) 973
HinfI GANTC 2 cut(s) 280, 539
HpaI GTTAAC 1 cut(s) 973
HpaII CCGG 4 cut(s) 184, 460, 583, 853
Hpy166II GTNNAC 6 cut(s) 6, 190, 522, 607, 850, 973
Hpy188I TCNGA 5 cut(s) 279, 387, 400, 777, 958
Hpy188III TCNNGA 3 cut(s) 331, 796, 806
Hpy8I GTNNAC 6 cut(s) 6, 190, 522, 607, 850, 973
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 689, 741, 782
HpyCH4III ACNGT 2 cut(s) 446, 591
HpyCH4IV ACGT 2 cut(s) 101, 737
HpyCH4V TGCA 6 cut(s) 23, 224, 245, 272, 326, 530
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 461, 687, 696
HpyF3I CTNAG 5 cut(s) 72, 77, 384, 399, 894
HpySE526I ACGT 2 cut(s) 101, 737
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 690, 904
HspAI GCGC 2 cut(s) 171, 503
KasI GGCGCC 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 903
KspAI GTTAAC 1 cut(s) 973
Kzo9I GATC 4 cut(s) 547, 727, 802, 903
LmnI GCTCC 3 cut(s) 86, 808, 827
Lsp1109I GCAGC 3 cut(s) 35, 38, 41
LweI GCATC 4 cut(s) 211, 232, 233, 517
MaeII ACGT 2 cut(s) 101, 737
MalI GATC 4 cut(s) 549, 729, 804, 905
MboI GATC 4 cut(s) 547, 727, 802, 903
MboII GAAGA 2 cut(s) 447, 450
MfeI CAATTG 2 cut(s) 33, 428
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 4 cut(s) 63, 107, 571, 589
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 4 cut(s) 33, 428, 507, 619
MluNI TGGCCA 1 cut(s) 719
Mly113I GGCGCC 1 cut(s) 171
MnlI CCTC 3 cut(s) 111, 401, 701
Mox20I TGGCCA 1 cut(s) 719
Mph1103I ATGCAT 1 cut(s) 226
MscI TGGCCA 1 cut(s) 719
MseI TTAA 1 cut(s) 972
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 4 cut(s) 184, 460, 583, 853
MspR9I CCNGG 5 cut(s) 185, 345, 461, 584, 653
MunI CAATTG 2 cut(s) 33, 428
MvaI CCWGG 2 cut(s) 345, 653
MwoI GCNNNNNNNGC 4 cut(s) 29, 461, 687, 696
NarI GGCGCC 1 cut(s) 171
NciI CCSGG 3 cut(s) 185, 461, 584
NdeI CATATG 1 cut(s) 16
NdeII GATC 4 cut(s) 547, 727, 802, 903
NlaIII CATG 2 cut(s) 690, 904
NlaIV GGNNCC 3 cut(s) 172, 638, 829
NsbI TGCGCA 1 cut(s) 504
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 690
PaeR7I CTCGAG 1 cut(s) 329
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 246
PfeI GAWTC 2 cut(s) 280, 539
PinAI ACCGGT 1 cut(s) 852
PkrI GCNGC 4 cut(s) 25, 28, 31, 701
PluTI GGCGCC 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 343, 651
PspGI CCWGG 2 cut(s) 343, 651
PspN4I GGNNCC 3 cut(s) 172, 638, 829
PspPI GGNCC 2 cut(s) 410, 850
PstNI CAGNNNCTG 1 cut(s) 811
PsuI RGATCY 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 3 cut(s) 469, 631, 712
RsaNI GTAC 3 cut(s) 468, 630, 711
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 972
SatI GCNGC 4 cut(s) 24, 27, 30, 700
Sau3AI GATC 4 cut(s) 547, 727, 802, 903
Sau96I GGNCC 2 cut(s) 410, 850
ScrFI CCNGG 5 cut(s) 185, 345, 461, 584, 653
SduI GDGCHC 4 cut(s) 63, 107, 571, 589
SfaNI GCATC 4 cut(s) 211, 232, 233, 517
SfoI GGCGCC 1 cut(s) 172
Sfr274I CTCGAG 1 cut(s) 329
SinI GGWCC 2 cut(s) 410, 850
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 4 cut(s) 33, 428, 507, 619
SsiI CCGC 2 cut(s) 610, 699
SspDI GGCGCC 1 cut(s) 170
StyD4I CCNGG 5 cut(s) 183, 343, 459, 582, 651
TaaI ACNGT 2 cut(s) 446, 591
TaiI ACGT 2 cut(s) 104, 740
TaqI TCGA 5 cut(s) 116, 237, 330, 750, 818
TasI AATT 4 cut(s) 33, 428, 507, 619
TauI GCSGC 1 cut(s) 702
TfiI GAWTC 2 cut(s) 280, 539
Tru1I TTAA 1 cut(s) 972
Tru9I TTAA 1 cut(s) 972
TscAI CASTG 5 cut(s) 529, 596, 631, 829, 943
TseI GCWGC 3 cut(s) 23, 26, 29
TspGWI ACGGA 1 cut(s) 815
TspRI CASTG 5 cut(s) 529, 596, 631, 829, 943
VpaK11BI GGWCC 2 cut(s) 410, 850
XceI RCATGY 1 cut(s) 690
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.