AT5G06730

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003999
Physical Location & Seq
Reverse (-)
2079925 .. 2081685
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06730.1

Sequence Viewer

Length: 1077 bp
ATGGCTGTAACAAGCTCTTCTTCTACTTGTGATGGTTTCTTCATCATCAGCCTTATTGTTATCGTTTCTTCATTGTTTGGGACATCATCTGCGCAGTTAAACGCAACGTTTTACTCAGGCACATGCCCTAACGCCTCTGCCATCGTTCGCAGCACTATTCAGCAAGCTCTTCAATCCGATGCAAGAATCGGAGGCAGCCTAATCCGCCTTCATTTTCACGACTGTTTTGTTAATGGTTGCGATGGGTCGCTCTTGCTTGACGACACTTCAAGCATCCAGAGCGAGAAGAACGCTCCTGCCAATGCAAACTCAACTAGAGGATTCAATGTTGTCGATAGTATCAAGACAGCCCTCGAGAATGCTTGTCCGGGCATTGTTTCTTGCTCTGACATTTTAGCTCTTGCCTCAGAGGCCTCTGTGTCTTTGGCAGGAGGACCTTCATGGACTGTGTTATTAGGAAGAAGAGATGGTCTCACCGCAAACTTGTCTGGAGCCAATTCGTCTCTTCCCTCTCCCTTCGAAGGCCTTAACAACATCACATCAAAATTTGTAGCTGTCGGGCTAAAGACAACCGATGTAGTATCCTTGTCTGGAGCGCATACGTTTGGGCGTGGTCAATGCGTAACGTTCAACAATAGACTATTCAACTTCAACGGGACAGGAAACCCCGACCCGACTCTGAACTCAACACTTCTCAGCAGTCTTCAACAGCTATGTCCTCAAAACGGCAGCAATACAGGGATCACCAATCTCGATCTGAGCACACCTGATGCGTTCGATAACAATTACTTCACGAACCTTCAGAGTAACAATGGGCTTCTCCAGTCAGACCAGGAACTGTTCTCAAACACCGGTTCAGCCACCGTCCCGATTGTTAATTCCTTTGCAAGTAACCAGACCCTGTTTTTTGAGGCGTTTGTTCAGTCTATGATCAAGATGGGGAACATTAGTCCCTTGACTGGGAGTAGTGGAGAGATTAGACAAGACTGTAAGGTGGTTAATGGACAGTCATCAGCCACTGAAGCAGGGGACATTCAGTTACAATCTGACGGACCAGTGAGTGTAGCAGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0002215 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0022414 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0048046 GO:0048367 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0090567 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

358

Amino Acids

37.29

Weight (kDa)

4.48

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 298 3.3e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AciI CCGC 2 cut(s) 205, 477
AclI AACGTT 2 cut(s) 107, 626
AclWI GGATC 1 cut(s) 749
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 2 cut(s) 785, 1041
AfiI CCNNNNNNNGG 4 cut(s) 521, 725, 959, 960
AgeI ACCGGT 1 cut(s) 851
AgsI TTSAA 7 cut(s) 173, 270, 325, 631, 646, 652, 707
AjnI CCWGG 1 cut(s) 831
AluBI AGCT 5 cut(s) 15, 167, 398, 554, 712
AluI AGCT 5 cut(s) 15, 167, 398, 554, 712
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 2 cut(s) 476, 507
AlwI GGATC 1 cut(s) 749
AlwNI CAGNNNCTG 3 cut(s) 838, 901, 1019
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 2 cut(s) 411, 523
ApeKI GCWGC 3 cut(s) 150, 195, 729
ApoI RAATTY 1 cut(s) 545
AsiGI ACCGGT 1 cut(s) 851
AspLEI GCGC 2 cut(s) 94, 598
AspS9I GGNCC 2 cut(s) 434, 1052
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 466, 736
AsuII TTCGAA 1 cut(s) 519
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 2 cut(s) 434, 1052
BbsI GAAGAC 1 cut(s) 695
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 3 cut(s) 162, 207, 741
BccI CCATC 5 cut(s) 26, 149, 236, 461, 931
BceAI ACGGC 1 cut(s) 742
BciT130I CCWGG 1 cut(s) 833
BciVI GTATCC 1 cut(s) 592
BclI TGATCA 1 cut(s) 930
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 476, 507
BfaI CTAG 1 cut(s) 315
BfuI GTATCC 1 cut(s) 592
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 3 cut(s) 151, 196, 730
BlsI GCNGC 3 cut(s) 152, 197, 731
Bme1390I CCNGG 2 cut(s) 369, 833
Bme18I GGWCC 2 cut(s) 434, 1052
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 434, 1052
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 2 cut(s) 369, 833
BmrI ACTGGG 1 cut(s) 969
BmsI GCATC 3 cut(s) 169, 282, 760
BmuI ACTGGG 1 cut(s) 969
BpiI GAAGAC 1 cut(s) 695
BplI GAGNNNNNCTC 2 cut(s) 456, 488
BpmI CTGGAG 3 cut(s) 510, 612, 806
Bpu14I TTCGAA 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 476
BsaWI WCCGGW 1 cut(s) 851
Bsc4I CCNNNNNNNGG 4 cut(s) 521, 725, 959, 960
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 3 cut(s) 823, 964, 1055
BseBI CCWGG 1 cut(s) 833
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 4 cut(s) 521, 725, 959, 960
BseMII CTCAG 4 cut(s) 129, 420, 709, 749
BseNI ACTGG 3 cut(s) 823, 964, 1055
BseXI GCAGC 3 cut(s) 162, 207, 741
BshFI GGCC 2 cut(s) 413, 525
BshTI ACCGGT 1 cut(s) 851
BsiHKAI GWGCWC 1 cut(s) 764
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 2 cut(s) 368, 852
BslFI GGGAC 5 cut(s) 94, 670, 851, 936, 1043
BslI CCNNNNNNNGG 4 cut(s) 521, 725, 959, 960
BsmAI GTCTC 2 cut(s) 476, 507
BsmBI CGTCTC 1 cut(s) 507
BsmFI GGGAC 5 cut(s) 94, 670, 851, 936, 1043
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 2 cut(s) 413, 525
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 764
Bsp143I GATC 3 cut(s) 741, 754, 930
BspACI CCGC 2 cut(s) 205, 477
BspANI GGCC 2 cut(s) 413, 525
BspCNI CTCAG 4 cut(s) 128, 419, 708, 750
BspLI GGNNCC 1 cut(s) 493
BspPI GGATC 1 cut(s) 749
BspQI GCTCTTC 2 cut(s) 22, 174
BspT104I TTCGAA 1 cut(s) 519
BspTNI GGTCTC 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 3 cut(s) 823, 964, 1055
BssAI RCCGGY 1 cut(s) 851
BssMI GATC 3 cut(s) 741, 754, 930
Bst2UI CCWGG 1 cut(s) 833
Bst4CI ACNGT 6 cut(s) 224, 448, 840, 865, 989, 1008
Bst6I CTCTTC 4 cut(s) 22, 174, 457, 510
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 115, 406, 695, 758
BstF5I GGATG 1 cut(s) 273
BstHHI GCGC 2 cut(s) 94, 598
BstKTI GATC 3 cut(s) 744, 757, 933
BstMAI GTCTC 2 cut(s) 476, 507
BstMBI GATC 3 cut(s) 741, 754, 930
BstMWI GCNNNNNNNGC 4 cut(s) 204, 279, 410, 1022
BstNI CCWGG 1 cut(s) 833
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 367, 831
BstV1I GCAGC 3 cut(s) 162, 207, 741
BstV2I GAAGAC 1 cut(s) 695
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 413, 525
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 273
BtsIMutI CAGTG 2 cut(s) 1017, 1062
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 3 cut(s) 838, 901, 1019
CfoI GCGC 2 cut(s) 94, 598
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 2 cut(s) 434, 1052
CspAI ACCGGT 1 cut(s) 851
CviAII CATG 2 cut(s) 123, 441
DdeI CTNAG 4 cut(s) 115, 406, 695, 758
DpnI GATC 3 cut(s) 743, 756, 932
DpnII GATC 3 cut(s) 741, 754, 930
Eam1104I CTCTTC 4 cut(s) 22, 174, 457, 510
EarI CTCTTC 4 cut(s) 22, 174, 457, 510
EciI GGCGGA 1 cut(s) 194
Eco147I AGGCCT 2 cut(s) 413, 525
Eco31I GGTCTC 1 cut(s) 476
Eco47I GGWCC 2 cut(s) 434, 1052
Eco57I CTGAAG 2 cut(s) 785, 1041
Eco88I CYCGRG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 831
Esp3I CGTCTC 1 cut(s) 507
FaeI CATG 2 cut(s) 126, 444
FaiI YATR 6 cut(s) 124, 442, 600, 715, 929, 1073
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 5 cut(s) 94, 670, 851, 936, 1043
FatI CATG 2 cut(s) 122, 440
FbaI TGATCA 1 cut(s) 930
Fnu4HI GCNGC 3 cut(s) 151, 196, 730
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 151, 196, 730
FspBI CTAG 1 cut(s) 315
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 2 cut(s) 93, 597
GluI GCNGC 3 cut(s) 151, 196, 730
GsuI CTGGAG 3 cut(s) 510, 612, 806
HaeIII GGCC 2 cut(s) 413, 525
HapII CCGG 2 cut(s) 368, 852
HhaI GCGC 2 cut(s) 94, 598
Hin1II CATG 2 cut(s) 126, 444
Hin6I GCGC 2 cut(s) 92, 596
HinP1I GCGC 2 cut(s) 92, 596
HinfI GANTC 3 cut(s) 186, 321, 676
HpaII CCGG 2 cut(s) 368, 852
HphI GGTGA 2 cut(s) 466, 736
Hpy188I TCNGA 9 cut(s) 178, 191, 388, 409, 681, 759, 804, 829, 1048
HpyAV CCTTC 5 cut(s) 218, 447, 515, 526, 809
HpyCH4III ACNGT 6 cut(s) 224, 448, 840, 865, 989, 1008
HpyCH4IV ACGT 3 cut(s) 107, 602, 626
HpyCH4V TGCA 3 cut(s) 182, 305, 887
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 279, 410, 1022
HpyF3I CTNAG 4 cut(s) 115, 406, 695, 758
HpySE526I ACGT 3 cut(s) 107, 602, 626
Hsp92II CATG 2 cut(s) 126, 444
HspAI GCGC 2 cut(s) 92, 596
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 3 cut(s) 741, 754, 930
LguI GCTCTTC 2 cut(s) 22, 174
LmnI GCTCC 3 cut(s) 298, 491, 593
Lsp1109I GCAGC 3 cut(s) 162, 207, 741
LweI GCATC 3 cut(s) 169, 282, 760
MaeI CTAG 1 cut(s) 315
MaeII ACGT 3 cut(s) 107, 602, 626
MaeIII GTNAC 5 cut(s) 7, 622, 806, 890, 1038
MalI GATC 3 cut(s) 743, 756, 932
MboI GATC 3 cut(s) 741, 754, 930
MhlI GDGCHC 1 cut(s) 764
MluCI AATT 4 cut(s) 496, 545, 784, 877
MlyI GAGTC 1 cut(s) 670
MseI TTAA 5 cut(s) 98, 231, 528, 876, 999
MspI CCGG 2 cut(s) 368, 852
MspR9I CCNGG 2 cut(s) 369, 833
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 1 cut(s) 833
MwoI GCNNNNNNNGC 4 cut(s) 204, 279, 410, 1022
NciI CCSGG 1 cut(s) 369
NdeII GATC 3 cut(s) 741, 754, 930
NlaIII CATG 2 cut(s) 126, 444
NlaIV GGNNCC 1 cut(s) 493
NsbI TGCGCA 1 cut(s) 93
NspI RCATGY 1 cut(s) 126
NspV TTCGAA 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 353
PceI AGGCCT 2 cut(s) 413, 525
PciSI GCTCTTC 2 cut(s) 22, 174
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 2 cut(s) 186, 321
PinAI ACCGGT 1 cut(s) 851
PkrI GCNGC 3 cut(s) 152, 197, 731
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
PpuMI RGGWCCY 1 cut(s) 434
Psp1406I AACGTT 2 cut(s) 107, 626
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 831
PspGI CCWGG 1 cut(s) 831
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 2 cut(s) 434, 1052
PspPPI RGGWCCY 1 cut(s) 434
PstNI CAGNNNCTG 3 cut(s) 838, 901, 1019
SapI GCTCTTC 2 cut(s) 22, 174
SaqAI TTAA 5 cut(s) 98, 231, 528, 876, 999
SatI GCNGC 3 cut(s) 151, 196, 730
Sau3AI GATC 3 cut(s) 741, 754, 930
Sau96I GGNCC 2 cut(s) 434, 1052
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 2 cut(s) 369, 833
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 3 cut(s) 169, 282, 760
Sfr274I CTCGAG 1 cut(s) 353
SfuI TTCGAA 1 cut(s) 519
SinI GGWCC 2 cut(s) 434, 1052
SlaI CTCGAG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 4 cut(s) 496, 545, 784, 877
SseBI AGGCCT 2 cut(s) 413, 525
SsiI CCGC 2 cut(s) 205, 477
SspMI CTAG 1 cut(s) 315
StuI AGGCCT 2 cut(s) 413, 525
StyD4I CCNGG 2 cut(s) 367, 831
TaaI ACNGT 6 cut(s) 224, 448, 840, 865, 989, 1008
TaiI ACGT 3 cut(s) 110, 605, 629
TaqI TCGA 5 cut(s) 333, 354, 519, 753, 777
TasI AATT 4 cut(s) 496, 545, 784, 877
TfiI GAWTC 2 cut(s) 186, 321
Tru1I TTAA 5 cut(s) 98, 231, 528, 876, 999
Tru9I TTAA 5 cut(s) 98, 231, 528, 876, 999
TscAI CASTG 2 cut(s) 1024, 1062
TseI GCWGC 3 cut(s) 150, 195, 729
TspDTI ATGAA 4 cut(s) 31, 60, 200, 429
TspGWI ACGGA 1 cut(s) 1065
TspRI CASTG 2 cut(s) 1024, 1062
VpaK11BI GGWCC 2 cut(s) 434, 1052
XapI RAATTY 1 cut(s) 545
XceI RCATGY 1 cut(s) 126
XhoI CTCGAG 1 cut(s) 353
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.