RchiOBHm_Chr5g0080911

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003999
Physical Location & Seq
Forward (+)
86936952 .. 86938262
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35519

Sequence Viewer

Length: 618 bp
ATGCAGGTCCGAATCTATCCACAGCTGGATATCCATGTGATTGATGACATCAAAACTGCACTCGAGAATGTCTGCCCTGGTGTTGTCTCCTGTGCTGAAATTGTAGCTCTTGCTTCTCAGATACTCGTTTCTGAGAATGGAGGACCAACTTGGGAAGTTCAATTGGGAAGAAGAGACAGTAGGACAGCCAACCGGGCTGGTACTACTGCCATTCCAGGTCCTAGAGAAACCCTTGCGCAAATTACCAAAAAGTTCACTGATGCAGGACTTGATTCTACAGATCTCGTTGCTTTGTCAGGTGCTCATACATTTGGCCGGGCACGGTGTTCAACTTTCGTCCACCGCCTATACAATTTTAGTGGTACCGGGAACCCCGACCCAAGCCTGGACACAACTTACTTGGAAACCCTACGCCAAACATGCCCCGAAGGCGGCGATGGAGGTACATTGGCCAACCTTGATCCTTCTACGCCCAATGGCTTCGACAACAACTACTCCACAAACCTTCAGAACAAGCAGGGGCTTCTCCAGACGGATCAGGAGCTGACACTGTTTCCATTGTGGACCGGTTTGCTAATAGCCAAAGCGACTTCTTTGACACTTTTGCTAAGTCCATGA

Protein Analysis

205

Amino Acids

22.03

Weight (kDa)

4.97

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 11 - 183 1.4e-56 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 237
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 362
AciI CCGC 2 cut(s) 343, 432
AclWI GGATC 2 cut(s) 455, 543
AcoI YGGCCR 2 cut(s) 313, 450
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 3 cut(s) 202, 364, 445
AfiI CCNNNNNNNGG 2 cut(s) 385, 431
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 2 cut(s) 161, 330
AjnI CCWGG 3 cut(s) 76, 214, 384
AluBI AGCT 3 cut(s) 25, 107, 544
AluI AGCT 3 cut(s) 25, 107, 544
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 91, 168
AlwI GGATC 2 cut(s) 455, 543
AlwNI CAGNNNCTG 1 cut(s) 544
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 2 cut(s) 313, 450
AsiGI ACCGGT 1 cut(s) 566
Asp718I GGTACC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 4 cut(s) 7, 143, 218, 564
AsuC2I CCSGG 3 cut(s) 194, 317, 367
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 4 cut(s) 7, 143, 218, 564
BaeGI GKGCMC 1 cut(s) 322
BalI TGGCCA 1 cut(s) 452
BanI GGYRCC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 3 cut(s) 78, 216, 386
BcnI CCSGG 3 cut(s) 194, 317, 367
BcoDI GTCTC 2 cut(s) 91, 168
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 276
BglI GCCNNNNNGGC 2 cut(s) 194, 429
BglII AGATCT 1 cut(s) 280
BisI GCNGC 1 cut(s) 433
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 6 cut(s) 78, 194, 216, 317, 367, 386
Bme18I GGWCC 4 cut(s) 7, 143, 218, 564
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 4 cut(s) 7, 143, 218, 564
BmiI GGNNCC 2 cut(s) 364, 371
BmrFI CCNGG 6 cut(s) 78, 194, 216, 317, 367, 386
BmsI GCATC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 512
BpuMI CCSGG 3 cut(s) 194, 317, 367
BsaJI CCNNGG 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 566
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 431
Bse118I RCCGGY 1 cut(s) 566
BseBI CCWGG 3 cut(s) 78, 216, 386
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 385, 431
BseMII CTCAG 2 cut(s) 123, 131
BseSI GKGCMC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 2 cut(s) 315, 452
BshNI GGYRCC 1 cut(s) 362
BshTI ACCGGT 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 4 cut(s) 193, 316, 366, 567
BslI CCNNNNNNNGG 2 cut(s) 385, 431
BsmAI GTCTC 2 cut(s) 91, 168
BsnI GGCC 2 cut(s) 315, 452
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 304, 322
Bsp143I GATC 3 cut(s) 280, 460, 535
BspACI CCGC 2 cut(s) 343, 432
BspANI GGCC 2 cut(s) 315, 452
BspCNI CTCAG 2 cut(s) 124, 130
BspLI GGNNCC 2 cut(s) 364, 371
BspPI GGATC 2 cut(s) 455, 543
BspT107I GGYRCC 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 3 cut(s) 280, 460, 535
Bst2UI CCWGG 3 cut(s) 78, 216, 386
Bst4CI ACNGT 3 cut(s) 179, 324, 552
Bst6I CTCTTC 1 cut(s) 166
BstDEI CTNAG 3 cut(s) 117, 132, 608
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 283, 463, 538
BstMAI GTCTC 2 cut(s) 91, 168
BstMBI GATC 3 cut(s) 280, 460, 535
BstMWI GCNNNNNNNGC 3 cut(s) 194, 420, 429
BstNI CCWGG 3 cut(s) 78, 216, 386
BstNSI RCATGY 1 cut(s) 423
BstSCI CCNGG 6 cut(s) 76, 192, 214, 315, 365, 384
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 315, 452
BtgZI GCGATG 1 cut(s) 450
BtsIMutI CAGTG 2 cut(s) 255, 548
CaiI CAGNNNCTG 1 cut(s) 544
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 4 cut(s) 7, 143, 218, 564
Csp6I GTAC 3 cut(s) 201, 363, 444
CspAI ACCGGT 1 cut(s) 566
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 3 cut(s) 35, 420, 615
CviQI GTAC 3 cut(s) 201, 363, 444
DdeI CTNAG 3 cut(s) 117, 132, 608
DpnI GATC 3 cut(s) 282, 462, 537
DpnII GATC 3 cut(s) 280, 460, 535
EaeI YGGCCR 2 cut(s) 313, 450
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 4 cut(s) 7, 143, 218, 564
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 76, 214, 384
EcoRV GATATC 1 cut(s) 31
FaeI CATG 3 cut(s) 38, 423, 618
FaiI YATR 5 cut(s) 36, 306, 349, 421, 616
FatI CATG 3 cut(s) 34, 419, 614
Fnu4HI GCNGC 1 cut(s) 433
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 1 cut(s) 222
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 433
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 2 cut(s) 315, 452
HapII CCGG 4 cut(s) 193, 316, 366, 567
HhaI GCGC 1 cut(s) 238
Hin1II CATG 3 cut(s) 38, 423, 618
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 2 cut(s) 12, 272
HpaII CCGG 4 cut(s) 193, 316, 366, 567
Hpy166II GTNNAC 3 cut(s) 255, 340, 564
Hpy188I TCNGA 4 cut(s) 11, 120, 133, 510
Hpy188III TCNNGA 3 cut(s) 64, 529, 539
Hpy8I GTNNAC 3 cut(s) 255, 340, 564
HpyAV CCTTC 3 cut(s) 422, 474, 515
HpyCH4III ACNGT 3 cut(s) 179, 324, 552
HpyCH4V TGCA 3 cut(s) 4, 59, 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 420, 429
HpyF3I CTNAG 3 cut(s) 117, 132, 608
Hsp92II CATG 3 cut(s) 38, 423, 618
HspAI GCGC 1 cut(s) 236
KpnI GGTACC 1 cut(s) 366
Kzo9I GATC 3 cut(s) 280, 460, 535
LmnI GCTCC 1 cut(s) 541
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 222
MalI GATC 3 cut(s) 282, 462, 537
MboI GATC 3 cut(s) 280, 460, 535
MboII GAAGA 2 cut(s) 180, 183
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 304, 322
MlsI TGGCCA 1 cut(s) 452
MluCI AATT 4 cut(s) 99, 161, 240, 352
MluNI TGGCCA 1 cut(s) 452
MnlI CCTC 2 cut(s) 134, 434
Mox20I TGGCCA 1 cut(s) 452
MscI TGGCCA 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 4 cut(s) 193, 316, 366, 567
MspR9I CCNGG 6 cut(s) 78, 194, 216, 317, 367, 386
MunI CAATTG 1 cut(s) 161
MvaI CCWGG 3 cut(s) 78, 216, 386
MwoI GCNNNNNNNGC 3 cut(s) 194, 420, 429
NciI CCSGG 3 cut(s) 194, 317, 367
NdeII GATC 3 cut(s) 280, 460, 535
NlaIII CATG 3 cut(s) 38, 423, 618
NlaIV GGNNCC 2 cut(s) 364, 371
NsbI TGCGCA 1 cut(s) 237
NspI RCATGY 1 cut(s) 423
PaeR7I CTCGAG 1 cut(s) 62
PfeI GAWTC 2 cut(s) 12, 272
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 1 cut(s) 434
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 3 cut(s) 76, 214, 384
PspGI CCWGG 3 cut(s) 76, 214, 384
PspN4I GGNNCC 2 cut(s) 364, 371
PspPI GGNCC 4 cut(s) 7, 143, 218, 564
PspPPI RGGWCCY 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 3 cut(s) 202, 364, 445
RsaNI GTAC 3 cut(s) 201, 363, 444
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 3 cut(s) 280, 460, 535
Sau96I GGNCC 4 cut(s) 7, 143, 218, 564
ScrFI CCNGG 6 cut(s) 78, 194, 216, 317, 367, 386
SduI GDGCHC 2 cut(s) 304, 322
SetI ASST 9 cut(s) 9, 27, 109, 220, 301, 445, 459, 507, 546
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 276
Sfr274I CTCGAG 1 cut(s) 62
SinI GGWCC 4 cut(s) 7, 143, 218, 564
SlaI CTCGAG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 4 cut(s) 99, 161, 240, 352
SsiI CCGC 2 cut(s) 343, 432
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 6 cut(s) 76, 192, 214, 315, 365, 384
TaaI ACNGT 3 cut(s) 179, 324, 552
TaqI TCGA 2 cut(s) 63, 483
TasI AATT 4 cut(s) 99, 161, 240, 352
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 2 cut(s) 12, 272
TscAI CASTG 2 cut(s) 262, 555
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 262, 555
VpaK11BI GGWCC 4 cut(s) 7, 143, 218, 564
XceI RCATGY 1 cut(s) 423
XhoI CTCGAG 1 cut(s) 62
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.