Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003999

Physical Location & Seq

Genomic Coordinates Reverse (-)

4837872 .. 4841151

Gene Structure 3280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04890.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCGTCTTCTTCTTCTTCAACTGCTCACTCCTTGGCATTAGCAACCACATATGTAGTAGTTTTACTTCTGCTACATGTACCTAACTATAATGCTCAACTGAACTCTACATTTTACTCCACCACCTGTCCAAACGTGACAAGCATTGTGCGCAGTGCGGTTCAACAAGCTTTGCAATCTGATTCGAGGATTGGTGCAAGCCTTATTCGTCTCCATTTCCATGATTGCTTCGTCAATGGTTGTGATGCTTCAATCTTGTTGGACAAAAATGGAACCATACAACAGAGTGAGAAAGATGCAGCTCCAAACACCAACTCCACTCGAGGCTTTGATGTGGTTGACAATATCAAGACTGCTCTGGAAAATTCATGCCCAGGTGTTGTATCTTGTGCTGACCTTCTTGCGCTTGCGGCTGAAGCTTCTGTTTCTTTGTCAGGAGGCCCTGCATGGAATGTATTATTAGGGAGAAGAGACAGCCTAACAGCAAACCAGGCTGGAGCCAATACCTCTATTCCTTCACCTTTTGAAAGCTTAGCAAACATTACTTCCAAGTTTTCTGCTGTTGGGCTGAACACCAACGACCTCGTTGCATTATCTGGGGCACATACATTTGGACGAGCTCAATGTCGAACATTTAGCAATCGATTGTACAACTTCAACAGCACAGGAAACCCCGATCCAACACTGAACTCATCTTACTTGACCACTCTCCAACAAACATGTCCACAAAATGGGAGCGGAACTGCTCTAGCCAACCTCGATCTCAGCACTCCAGATGCGTTTGACAACAACTACTTCACAAACCTTCAAAACAATCAAGGCCTTCTGCAATCCGATCAAGAGTTATTTTCGACGGCAGGGGCTGCCACAGTTTCCATTGTTAATAGCTTTAGTAGCAACCAGAGCGCCTTCTTTCAGAGCTTTGCTCAGTCGATGATCAATATGGGAAATATCAGTCCACTAGTGGGAACTAGTGGGGAGATTAGGTTGGATTGTAAGAATGTCAATGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002215 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0012505 GO:0016020 GO:0022414 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090567 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

339

Amino Acids

35.58

Weight (kDa)

5.07

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06720 AT5G06730
fragaria_vesca	FvH4_3g44360
malus_domestica	MD03G1014200.v1.1 MD03G1014400.v1.1 MD11G1015300.v1.1 MD12G1056000.v1.1
prunus_persica	Prupe.6G013500_v2.0.a1 Prupe.6G013600_v2.0.a1 Prupe.7G079100_v2.0.a1
pyrus_communis	pycom03g01180 pycom11g01070 pycom12g04890
rosa_chinensis	RchiOBHm_Chr5g0054001 RchiOBHm_Chr5g0080751 RchiOBHm_Chr5g0080861 RchiOBHm_Chr5g0080911
rosa_laevigata	RLG00000036891 RLG00000036897
rosa_multiflora	Rmu_sc0003177.1_g000004 Rmu_sc0003177.1_g000020
rosa_roxburghii	Rroxscaffold_1G00002590
rosa_rugosa	Rorug05G0472000
rosa_samantha	Rh5AG525400 Rh5BG547400 Rh5BG547900 Rh5CG570900 Rh5CG571400 Rh5DG557700
rosa_wichuraiana	Rw5G048710 Rw5G048720 Rw5G049270 Rw5G049300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccBSI	CCGCTC	1 cut(s)	738
AciI	CCGC	3 cut(s)	158, 410, 738
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	2 cut(s)	81, 650
AfiI	CCNNNNNNNGG	2 cut(s)	731, 965
AflIII	ACRYGT	2 cut(s)	76, 719
AgsI	TTSAA	6 cut(s)	21, 164, 252, 527, 658, 809
AhlI	ACTAGT	2 cut(s)	961, 971
AjnI	CCWGG	2 cut(s)	373, 489
AluBI	AGCT	7 cut(s)	170, 302, 419, 531, 620, 888, 921
AluI	AGCT	7 cut(s)	170, 302, 419, 531, 620, 888, 921
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	2 cut(s)	215, 465
AlwI	GGATC	1 cut(s)	671
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	439, 820
ApeKI	GCWGC	2 cut(s)	299, 863
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	3 cut(s)	153, 406, 908
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	510
AvaI	CYCGRG	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	622
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	311, 850
BceAI	ACGGC	1 cut(s)	870
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	2 cut(s)	375, 491
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	2 cut(s)	215, 465
BcuI	ACTAGT	2 cut(s)	961, 971
BfaI	CTAG	3 cut(s)	749, 962, 972
BfoI	RGCGCY	1 cut(s)	909
BisI	GCNGC	3 cut(s)	300, 411, 864
BlpI	GCTNAGC	1 cut(s)	532
BlsI	GCNGC	3 cut(s)	301, 412, 865
Bme1390I	CCNGG	2 cut(s)	375, 491
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	274, 499
BmrFI	CCNGG	2 cut(s)	375, 491
BmsI	GCATC	3 cut(s)	235, 286, 766
BplI	GAGNNNNNCTC	2 cut(s)	910, 942
BpmI	CTGGAG	2 cut(s)	516, 756
Bpu1102I	GCTNAGC	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	643
BsaJI	CCNNGG	2 cut(s)	33, 373
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 971, 1001
Bsc4I	CCNNNNNNNGG	2 cut(s)	731, 965
BseBI	CCWGG	2 cut(s)	375, 491
BseCI	ATCGAT	1 cut(s)	643
BseDI	CCNNGG	2 cut(s)	33, 373
BseLI	CCNNNNNNNGG	2 cut(s)	731, 965
BseMII	CTCAG	2 cut(s)	778, 941
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	311, 850
BshFI	GGCC	2 cut(s)	441, 822
BshVI	ATCGAT	1 cut(s)	643
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	731, 965
BsmAI	GTCTC	2 cut(s)	215, 465
BsmBI	CGTCTC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	441, 822
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	604, 622
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	4 cut(s)	676, 760, 835, 936
Bsp1720I	GCTNAGC	1 cut(s)	532
BspACI	CCGC	3 cut(s)	158, 410, 738
BspANI	GGCC	2 cut(s)	441, 822
BspCNI	CTCAG	2 cut(s)	777, 940
BspDI	ATCGAT	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	274, 499
BspPI	GGATC	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	738
BsrGI	TGTACA	1 cut(s)	648
BssECI	CCNNGG	2 cut(s)	33, 373
BssMI	GATC	4 cut(s)	676, 760, 835, 936
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	375, 491
Bst4CI	ACNGT	1 cut(s)	871
Bst6I	CTCTTC	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstAUI	TGTACA	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	199, 408
BstDEI	CTNAG	3 cut(s)	532, 764, 927
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	3 cut(s)	153, 406, 908
BstKTI	GATC	4 cut(s)	679, 763, 838, 939
BstMAI	GTCTC	2 cut(s)	215, 465
BstMBI	GATC	4 cut(s)	676, 760, 835, 936
BstMWI	GCNNNNNNNGC	7 cut(s)	150, 410, 416, 491, 863, 894, 903
BstNI	CCWGG	2 cut(s)	375, 491
BstNSI	RCATGY	2 cut(s)	80, 723
BstSCI	CCNGG	2 cut(s)	373, 489
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	2 cut(s)	311, 850
Bsu15I	ATCGAT	1 cut(s)	643
BsuRI	GGCC	2 cut(s)	441, 822
BsuTUI	ATCGAT	1 cut(s)	643
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 683
Cac8I	GCNNGC	2 cut(s)	199, 408
CaiI	CAGNNNCTG	1 cut(s)	863
CfoI	GCGC	3 cut(s)	153, 406, 908
Cfr13I	GGNCC	1 cut(s)	440
ClaI	ATCGAT	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	80, 649
CviAII	CATG	5 cut(s)	77, 221, 369, 447, 720
CviQI	GTAC	2 cut(s)	80, 649
DdeI	CTNAG	3 cut(s)	532, 764, 927
DpnI	GATC	4 cut(s)	678, 762, 837, 938
DpnII	GATC	4 cut(s)	676, 760, 835, 936
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	622
Eco53kI	GAGCTC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	373, 489
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	5 cut(s)	80, 224, 372, 450, 723
FatI	CATG	5 cut(s)	76, 220, 368, 446, 719
FauNDI	CATATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	936
Fnu4HI	GCNGC	3 cut(s)	300, 411, 864
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	3 cut(s)	300, 411, 864
FspBI	CTAG	3 cut(s)	749, 962, 972
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	3 cut(s)	152, 405, 907
GluI	GCNGC	3 cut(s)	300, 411, 864
GsuI	CTGGAG	2 cut(s)	516, 756
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	2 cut(s)	441, 822
HhaI	GCGC	3 cut(s)	153, 406, 908
Hin1II	CATG	5 cut(s)	80, 224, 372, 450, 723
Hin6I	GCGC	3 cut(s)	151, 404, 906
HinP1I	GCGC	3 cut(s)	151, 404, 906
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	3 cut(s)	168, 417, 529
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	1 cut(s)	510
Hpy166II	GTNNAC	3 cut(s)	340, 725, 959
Hpy188I	TCNGA	3 cut(s)	181, 835, 918
Hpy188III	TCNNGA	5 cut(s)	349, 359, 435, 773, 839
Hpy8I	GTNNAC	3 cut(s)	340, 725, 959
Hpy99I	CGWCG	1 cut(s)	856
HpyAV	CCTTC	5 cut(s)	407, 525, 815, 833, 919
HpyCH4III	ACNGT	1 cut(s)	871
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	6 cut(s)	175, 197, 299, 446, 590, 829
HpyF10VI	GCNNNNNNNGC	7 cut(s)	150, 410, 416, 491, 863, 894, 903
HpyF3I	CTNAG	3 cut(s)	532, 764, 927
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	5 cut(s)	80, 224, 372, 450, 723
HspAI	GCGC	3 cut(s)	151, 404, 906
Ksp22I	TGATCA	1 cut(s)	936
Kzo9I	GATC	4 cut(s)	676, 760, 835, 936
LmnI	GCTCC	3 cut(s)	307, 497, 735
Lsp1109I	GCAGC	2 cut(s)	311, 850
LweI	GCATC	3 cut(s)	235, 286, 766
MaeI	CTAG	3 cut(s)	749, 962, 972
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	678, 762, 837, 938
MbiI	CCGCTC	1 cut(s)	738
MboI	GATC	4 cut(s)	676, 760, 835, 936
MboII	GAAGA	4 cut(s)	3, 6, 9, 480
MhlI	GDGCHC	2 cut(s)	604, 622
MluCI	AATT	1 cut(s)	364
MmeI	TCCRAC	4 cut(s)	240, 704, 736, 969
MnlI	CCTC	7 cut(s)	180, 317, 431, 517, 593, 767, 1004
MseI	TTAA	2 cut(s)	882, 1015
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	375, 491
MvaI	CCWGG	2 cut(s)	375, 491
MwoI	GCNNNNNNNGC	7 cut(s)	150, 410, 416, 491, 863, 894, 903
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	4 cut(s)	676, 760, 835, 936
NlaIII	CATG	5 cut(s)	80, 224, 372, 450, 723
NlaIV	GGNNCC	2 cut(s)	274, 499
NmuCI	GTSAC	1 cut(s)	136
NsbI	TGCGCA	1 cut(s)	152
NspI	RCATGY	2 cut(s)	80, 723
PaeR7I	CTCGAG	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	822
PciI	ACATGT	2 cut(s)	76, 719
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	731
PkrI	GCNGC	3 cut(s)	301, 412, 865
PscI	ACATGT	2 cut(s)	76, 719
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	373, 489
PspGI	CCWGG	2 cut(s)	373, 489
PspN4I	GGNNCC	2 cut(s)	274, 499
PspPI	GGNCC	1 cut(s)	440
PspXI	VCTCGAGB	1 cut(s)	321
PsrI	GAACNNNNNNTAC	2 cut(s)	680, 712
PstNI	CAGNNNCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	81, 650
RsaNI	GTAC	2 cut(s)	80, 649
RseI	CAYNNNNRTG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	622
SaqAI	TTAA	2 cut(s)	882, 1015
SatI	GCNGC	3 cut(s)	300, 411, 864
Sau3AI	GATC	4 cut(s)	676, 760, 835, 936
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	375, 491
SduI	GDGCHC	2 cut(s)	604, 622
SfaNI	GCATC	3 cut(s)	235, 286, 766
Sfr274I	CTCGAG	1 cut(s)	321
SlaI	CTCGAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SpeI	ACTAGT	2 cut(s)	961, 971
Sse9I	AATT	1 cut(s)	364
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	3 cut(s)	158, 410, 738
SspMI	CTAG	3 cut(s)	749, 962, 972
SstI	GAGCTC	1 cut(s)	622
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	2 cut(s)	373, 489
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	871
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	7 cut(s)	185, 322, 628, 643, 759, 851, 932
TasI	AATT	1 cut(s)	364
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	882, 1015
Tru9I	TTAA	2 cut(s)	882, 1015
TscAI	CASTG	2 cut(s)	160, 690
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	299, 863
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	160, 690
Van91I	CCANNNNNTGG	1 cut(s)	731
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	2 cut(s)	80, 723
XhoI	CTCGAG	1 cut(s)	321
XspI	CTAG	3 cut(s)	749, 962, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.