Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003999

Physical Location & Seq

Genomic Coordinates Reverse (-)

6330089 .. 6332766

Gene Structure 2678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1056000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCAGGAGGCCCTTCATGGAATGCATTATTAGGGAGAAGAGACAGCCTAACAGCAAACCAGGCTGGAGCCAATACCTCTATTCCTTCACCTTTTGAAGGCTTAGCAAACATTACTTCCAAGTTTTCTGCTGTTGGCCTGAACACCAACGACCTCGTTGCATTATCTGGGGCACATACATTTGGACGAGCTCAATGTCGAACATTTAGCAATCGATTGTACAACTTCAACGGCACAGGAAACCCCGACCCAACACTGAACTCATCTTACTTGACCACTCTCCAACAAACATGTCCACAAAATGGGAGTGGAACTGCTCTAGCCAACCTTGATCTCAACACTCCAGATGCGTTTGACAACAACTACTTCACAAACCTTCAAAACAATGAAGGCCTTTTGCAATCCGATCAAGAGTTATTTTCGACGGCAGGGGCTGCCACAGTTTCCATTGTTAATAGCTTTAGTAGCAACCAGAGCGCCTTCTTTGCGAGCTTTGCTCAGTCGATGATCAATATGGGAAATATCAGCCCATTAGTGGGAACTAGTGGGGAGATTAGGTTGGATTGTAAGAATGTCAATGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002215 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0012505 GO:0016020 GO:0022414 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090567 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

196

Amino Acids

20.46

Weight (kDa)

4.68

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	2 - 156	2.3e-45	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06720 AT5G06730
fragaria_vesca	FvH4_3g44360
malus_domestica	MD03G1014200.v1.1 MD03G1014400.v1.1 MD11G1015300.v1.1 MD12G1056000.v1.1
prunus_persica	Prupe.6G013500_v2.0.a1 Prupe.6G013600_v2.0.a1 Prupe.7G079100_v2.0.a1
pyrus_communis	pycom03g01180 pycom11g01070 pycom12g04890
rosa_chinensis	RchiOBHm_Chr5g0054001 RchiOBHm_Chr5g0080751 RchiOBHm_Chr5g0080861 RchiOBHm_Chr5g0080911
rosa_laevigata	RLG00000036891 RLG00000036897
rosa_multiflora	Rmu_sc0003177.1_g000004 Rmu_sc0003177.1_g000020
rosa_roxburghii	Rroxscaffold_1G00002590
rosa_rugosa	Rorug05G0472000
rosa_samantha	Rh5AG525400 Rh5BG547400 Rh5BG547900 Rh5CG570900 Rh5CG571400 Rh5DG557700
rosa_wichuraiana	Rw5G048710 Rw5G048720 Rw5G049270 Rw5G049300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	4 cut(s)	98, 302, 535, 536
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	98, 229, 380
AhlI	ACTAGT	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	3 cut(s)	191, 459, 492
AluI	AGCT	3 cut(s)	191, 459, 492
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	10, 136, 391
ApeKI	GCWGC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	421
BceAI	ACGGC	2 cut(s)	247, 441
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	36
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	2 cut(s)	320, 543
BfoI	RGCGCY	1 cut(s)	480
BisI	GCNGC	1 cut(s)	435
BlpI	GCTNAGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	337
BplI	GAGNNNNNCTC	2 cut(s)	481, 513
BpmI	CTGGAG	2 cut(s)	87, 327
Bpu1102I	GCTNAGC	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 302, 535, 536
BseBI	CCWGG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	214
BseLI	CCNNNNNNNGG	4 cut(s)	98, 302, 535, 536
BseMII	CTCAG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	421
BshFI	GGCC	3 cut(s)	12, 138, 393
BshVI	ATCGAT	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	98, 302, 535, 536
BsmAI	GTCTC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	12, 138, 393
Bsp1286I	GDGCHC	2 cut(s)	175, 193
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	331, 406, 507
Bsp1720I	GCTNAGC	1 cut(s)	103
BspANI	GGCC	3 cut(s)	12, 138, 393
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	219
BssMI	GATC	3 cut(s)	331, 406, 507
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	103, 498
BstENI	CCTNNNNNAGG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	3 cut(s)	334, 409, 510
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	3 cut(s)	331, 406, 507
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 434, 465, 474, 485, 494
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	12, 138, 393
BsuTUI	ATCGAT	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	490
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	11
ClaI	ATCGAT	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	18, 291
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	103, 498
DpnI	GATC	3 cut(s)	333, 408, 509
DpnII	GATC	3 cut(s)	331, 406, 507
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	2 cut(s)	21, 294
FaiI	YATR	4 cut(s)	19, 177, 292, 515
FatI	CATG	2 cut(s)	17, 290
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	435
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	2 cut(s)	320, 543
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	1 cut(s)	435
GsuI	CTGGAG	2 cut(s)	87, 327
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	12, 138, 393
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	21, 294
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	3 cut(s)	6, 344, 410
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	6 cut(s)	24, 92, 96, 383, 386, 490
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	3 cut(s)	26, 161, 400
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 434, 465, 474, 485, 494
HpyF3I	CTNAG	2 cut(s)	103, 498
Hsp92II	CATG	2 cut(s)	21, 294
HspAI	GCGC	1 cut(s)	477
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	331, 406, 507
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	47, 51, 74, 152, 153, 222, 357, 414, 485
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	320, 543
MalI	GATC	3 cut(s)	333, 408, 509
MboI	GATC	3 cut(s)	331, 406, 507
MboII	GAAGA	1 cut(s)	51
MhlI	GDGCHC	2 cut(s)	175, 193
MmeI	TCCRAC	2 cut(s)	307, 540
MnlI	CCTC	3 cut(s)	88, 164, 575
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	2 cut(s)	453, 586
MspR9I	CCNGG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	6 cut(s)	62, 434, 465, 474, 485, 494
NdeII	GATC	3 cut(s)	331, 406, 507
NlaIII	CATG	2 cut(s)	21, 294
NlaIV	GGNNCC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	393
PciI	ACATGT	1 cut(s)	290
PctI	GAATGC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	436
PscI	ACATGT	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	11
PsrI	GAACNNNNNNTAC	2 cut(s)	251, 283
PstNI	CAGNNNCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	453, 586
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	3 cut(s)	331, 406, 507
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	175, 193
SfaNI	GCATC	1 cut(s)	337
SpeI	ACTAGT	1 cut(s)	542
SseBI	AGGCCT	1 cut(s)	393
SspMI	CTAG	2 cut(s)	320, 543
SstI	GAGCTC	1 cut(s)	193
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	4 cut(s)	199, 214, 422, 503
TatI	WGTACW	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	453, 586
Tru9I	TTAA	2 cut(s)	453, 586
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	6, 402
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	302
XagI	CCTNNNNNAGG	1 cut(s)	96
XceI	RCATGY	1 cut(s)	294
XspI	CTAG	2 cut(s)	320, 543
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.