AT5G08340

FAD synthetase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2683782 .. 2687416
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08340.1

Sequence Viewer

Length: 1104 bp
ATGTTGTGCGGAGGCTCACGTGTCTTGCAGCATTTGTCCGACCACAATCATCATAATTCGATTGGTTTAGGATTAGGGTTTTGTGGTGCTAAGATTGTGCAGCTCTCTTCATTCTTTCTCAGGCCTTCTCAGGCTATGGCGAAGAGTCATCATTTCAGCCGTAAATTGCGTCAGCGGATGATTTCTTCATTTGGGTCTCATTGCAGAACATCCGGAGAAGTCCCAATTCTTCACAATTGTTTCAGCCAACGAGAAGATGATCCTGAGCTTCCAGTTGAAGGGTTATCTCCAGTGTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCATCGAGAGCTTACAATTCAAGCTTCAAGAATTGGAGCTCCATATCTATTATCTTTTGTTGGAATGGCCGAGGTACTTGGTTGGGAGCCCAGGGCACCTATAGTGGCCAAATGTGATCGACAAAGGGTGCTTACCTCTTGGGCCTCATATTGTGGAGACAGAGCGCCTGAAGAGTATGAGATAGAATTTGCCAGCGTGCGACATCTTACCCCACGACAGTTTGTGGAGAAGCTGTCAAAGGAGCTCAGAGTCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTCTGGTGATGCCTCTGAGCTAGTGAGACTGTGCGAGGAATGTGGTATCACTGCTTGCATCATAAACTCTGTGATGGACATGAAGCAAGGCTCAGCAAAGAGAGACTCAGGGGACTCAAAAGATAGAGGGCAAGTCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGATATGAGGTACGTATCAGAGCTCCTTGGCAGGGCACATCGTCTTATCTTGAGAGTCAGAACCCAAGATATGCCAAGTGAAAGGATGATCTCAGTCCCGAGATCATCAATACTTAATTTGCCACCAGGGATCGGAATTTATAAGGCATGTTTGCTTCTAGTTGGTGATGAGTCTTCAGTTCCGTGTACCGTAGTTGTTGATACATCAAATATCCATGTAGAAACAGAGGAGGTACGACTCTGTAATTTAGATTGGTCTCAAGAATTTCGACTCGTGAGTGTTGAGTTCGGTTGA

Protein Analysis

367

Amino Acids

40.53

Weight (kDa)

7.95

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_syn PF06574 180 - 239 5.2e-09 FAD synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 951
AarI CACCTGC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 436
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 5 cut(s) 9, 175, 597, 803, 806
AclWI GGATC 2 cut(s) 254, 947
AcoI YGGCCR 3 cut(s) 340, 408, 447
AcsI RAATTY 3 cut(s) 527, 945, 1073
AcuI CTGAAG 2 cut(s) 531, 969
AcvI CACGTG 2 cut(s) 20, 785
AfaI GTAC 5 cut(s) 417, 789, 821, 997, 1044
AfiI CCNNNNNNNGG 4 cut(s) 278, 296, 841, 941
AflIII ACRYGT 3 cut(s) 19, 782, 784
AgsI TTSAA 3 cut(s) 278, 362, 369
AjnI CCWGG 2 cut(s) 431, 934
Alw21I GWGCWC 3 cut(s) 382, 588, 834
Alw26I GTCTC 6 cut(s) 201, 492, 658, 735, 778, 1071
AlwI GGATC 2 cut(s) 254, 947
AlwNI CAGNNNCTG 1 cut(s) 594
Ama87I CYCGRG 1 cut(s) 907
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 5 cut(s) 122, 340, 408, 447, 483
ApeKI GCWGC 2 cut(s) 28, 100
ApoI RAATTY 3 cut(s) 527, 945, 1073
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 3 cut(s) 623, 656, 986
AvaI CYCGRG 1 cut(s) 907
BaeGI GKGCMC 2 cut(s) 439, 847
BalI TGGCCA 1 cut(s) 449
BanI GGYRCC 1 cut(s) 436
BanII GRGCYC 4 cut(s) 382, 432, 588, 834
BauI CACGAG 1 cut(s) 1082
BbrPI CACGTG 2 cut(s) 20, 785
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 3 cut(s) 382, 588, 834
BbvI GCAGC 2 cut(s) 40, 112
BccI CCATC 2 cut(s) 351, 706
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 2 cut(s) 433, 936
BcoDI GTCTC 6 cut(s) 201, 492, 658, 735, 778, 1071
BfaI CTAG 3 cut(s) 314, 659, 968
BfmI CTRYAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 509
BfuAI ACCTGC 1 cut(s) 599
BisI GCNGC 3 cut(s) 29, 101, 804
BlpI GCTNAGC 1 cut(s) 730
BlsI GCNGC 3 cut(s) 30, 102, 805
Bme1390I CCNGG 2 cut(s) 433, 936
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 2 cut(s) 429, 438
BmrFI CCNGG 2 cut(s) 433, 936
BmsI GCATC 3 cut(s) 316, 637, 705
BpiI GAAGAC 1 cut(s) 975
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 730
BpuEI CTTGAG 2 cut(s) 880, 1053
BsaAI YACGTR 3 cut(s) 20, 785, 823
BsaI GGTCTC 2 cut(s) 201, 1071
BsaJI CCNNGG 5 cut(s) 411, 431, 432, 835, 935
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 4 cut(s) 291, 321, 560, 590
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 296, 841, 941
Bse1I ACTGG 2 cut(s) 272, 290
Bse3DI GCAATG 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 2 cut(s) 433, 936
BseDI CCNNGG 5 cut(s) 411, 431, 432, 835, 935
BseGI GGATG 3 cut(s) 183, 209, 900
BseLI CCNNNNNNNGG 4 cut(s) 278, 296, 841, 941
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 8 cut(s) 133, 143, 255, 601, 645, 744, 759, 915
BseNI ACTGG 2 cut(s) 272, 290
BseRI GAGGAG 1 cut(s) 1052
BseSI GKGCMC 2 cut(s) 439, 847
BseXI GCAGC 2 cut(s) 40, 112
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 5 cut(s) 124, 342, 410, 449, 485
BshNI GGYRCC 1 cut(s) 436
BsiHKAI GWGCWC 3 cut(s) 382, 588, 834
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 3 cut(s) 206, 764, 890
BslI CCNNNNNNNGG 4 cut(s) 278, 296, 841, 941
BsmAI GTCTC 6 cut(s) 201, 492, 658, 735, 778, 1071
BsmFI GGGAC 3 cut(s) 206, 764, 890
BsnI GGCC 5 cut(s) 124, 342, 410, 449, 485
Bso31I GGTCTC 2 cut(s) 201, 1071
BsoBI CYCGRG 1 cut(s) 907
Bsp1286I GDGCHC 6 cut(s) 382, 432, 439, 588, 834, 847
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 5 cut(s) 259, 457, 897, 911, 939
Bsp1720I GCTNAGC 1 cut(s) 730
BspACI CCGC 5 cut(s) 9, 175, 597, 803, 806
BspANI GGCC 5 cut(s) 124, 342, 410, 449, 485
BspCNI CTCAG 8 cut(s) 132, 142, 256, 600, 646, 743, 758, 914
BspEI TCCGGA 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 429, 438
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 2 cut(s) 254, 947
BspT107I GGYRCC 1 cut(s) 436
BspTNI GGTCTC 2 cut(s) 201, 1071
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 2 cut(s) 272, 290
BssECI CCNNGG 5 cut(s) 411, 431, 432, 835, 935
BssMI GATC 5 cut(s) 259, 457, 897, 911, 939
BssSI CACGAG 1 cut(s) 1082
BssT1I CCWWGG 1 cut(s) 835
Bst2BI CACGAG 1 cut(s) 1082
Bst2UI CCWGG 2 cut(s) 433, 936
Bst4CI ACNGT 3 cut(s) 561, 669, 1000
Bst6I CTCTTC 4 cut(s) 112, 137, 507, 781
BstBAI YACGTR 3 cut(s) 20, 785, 823
BstC8I GCNNGC 3 cut(s) 535, 539, 694
BstDEI CTNAG 9 cut(s) 90, 119, 129, 264, 587, 654, 730, 745, 901
BstF5I GGATG 3 cut(s) 183, 209, 900
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 5 cut(s) 262, 460, 900, 914, 942
BstMAI GTCTC 6 cut(s) 201, 492, 658, 735, 778, 1071
BstMBI GATC 5 cut(s) 259, 457, 897, 911, 939
BstMWI GCNNNNNNNGC 1 cut(s) 803
BstNI CCWGG 2 cut(s) 433, 936
BstNSI RCATGY 1 cut(s) 960
BstSCI CCNGG 2 cut(s) 431, 934
BstSFI CTRYAG 1 cut(s) 441
BstSLI GKGCMC 2 cut(s) 439, 847
BstSNI TACGTA 1 cut(s) 823
BstV1I GCAGC 2 cut(s) 40, 112
BstV2I GAAGAC 1 cut(s) 975
BsuRI GGCC 5 cut(s) 124, 342, 410, 449, 485
BtsCI GGATG 3 cut(s) 183, 209, 900
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 2 cut(s) 297, 687
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 3 cut(s) 535, 539, 694
CaiI CAGNNNCTG 1 cut(s) 594
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 483
CseI GACGC 2 cut(s) 158, 627
Csp6I GTAC 5 cut(s) 416, 788, 820, 996, 1043
CviAII CATG 3 cut(s) 718, 957, 1025
CviQI GTAC 5 cut(s) 416, 788, 820, 996, 1043
DdeI CTNAG 9 cut(s) 90, 119, 129, 264, 587, 654, 730, 745, 901
DpnI GATC 5 cut(s) 261, 459, 899, 913, 941
DpnII GATC 5 cut(s) 259, 457, 897, 911, 939
EaeI YGGCCR 3 cut(s) 340, 408, 447
Eam1104I CTCTTC 4 cut(s) 112, 137, 507, 781
EarI CTCTTC 4 cut(s) 112, 137, 507, 781
Ecl136II GAGCTC 3 cut(s) 380, 586, 832
Eco105I TACGTA 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 835
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 4 cut(s) 382, 432, 588, 834
Eco31I GGTCTC 2 cut(s) 201, 1071
Eco53kI GAGCTC 3 cut(s) 380, 586, 832
Eco57I CTGAAG 2 cut(s) 531, 969
Eco72I CACGTG 2 cut(s) 20, 785
Eco88I CYCGRG 1 cut(s) 907
EcoICRI GAGCTC 3 cut(s) 380, 586, 832
EcoRII CCWGG 2 cut(s) 431, 934
EcoT14I CCWWGG 1 cut(s) 835
EcoT38I GRGCYC 4 cut(s) 382, 432, 588, 834
ErhI CCWWGG 1 cut(s) 835
FaeI CATG 3 cut(s) 721, 960, 1028
FaqI GGGAC 3 cut(s) 206, 764, 890
FatI CATG 3 cut(s) 717, 956, 1024
FauI CCCGC 1 cut(s) 799
Fnu4HI GCNGC 3 cut(s) 29, 101, 804
FokI GGATG 3 cut(s) 190, 196, 907
FriOI GRGCYC 4 cut(s) 382, 432, 588, 834
Fsp4HI GCNGC 3 cut(s) 29, 101, 804
FspBI CTAG 3 cut(s) 314, 659, 968
GlaI GCGC 1 cut(s) 507
GluI GCNGC 3 cut(s) 29, 101, 804
GsuI CTGGAG 1 cut(s) 273
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 5 cut(s) 124, 342, 410, 449, 485
HapII CCGG 1 cut(s) 213
HgaI GACGC 2 cut(s) 158, 627
HhaI GCGC 1 cut(s) 508
Hin1II CATG 3 cut(s) 721, 960, 1028
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 8 cut(s) 145, 591, 743, 752, 864, 980, 1047, 1080
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 623, 656, 986
Hpy166II GTNNAC 2 cut(s) 788, 996
Hpy188I TCNGA 6 cut(s) 40, 590, 655, 829, 869, 944
Hpy188III TCNNGA 9 cut(s) 213, 263, 297, 347, 369, 859, 907, 1070, 1084
Hpy8I GTNNAC 2 cut(s) 788, 996
HpyAV CCTTC 2 cut(s) 135, 272
HpyCH4III ACNGT 3 cut(s) 561, 669, 1000
HpyCH4IV ACGT 3 cut(s) 19, 784, 822
HpyCH4V TGCA 4 cut(s) 28, 100, 204, 696
HpyF10VI GCNNNNNNNGC 1 cut(s) 803
HpyF3I CTNAG 9 cut(s) 90, 119, 129, 264, 587, 654, 730, 745, 901
HpySE526I ACGT 3 cut(s) 19, 784, 822
Hsp92II CATG 3 cut(s) 721, 960, 1028
HspAI GCGC 1 cut(s) 506
Kpn2I TCCGGA 1 cut(s) 212
Kzo9I GATC 5 cut(s) 259, 457, 897, 911, 939
LmnI GCTCC 5 cut(s) 377, 385, 427, 583, 837
Lsp1109I GCAGC 2 cut(s) 40, 112
LweI GCATC 3 cut(s) 316, 637, 705
MaeI CTAG 3 cut(s) 314, 659, 968
MaeII ACGT 3 cut(s) 19, 784, 822
MalI GATC 5 cut(s) 261, 459, 899, 913, 941
MboI GATC 5 cut(s) 259, 457, 897, 911, 939
MboII GAAGA 8 cut(s) 99, 154, 177, 221, 266, 524, 768, 975
MfeI CAATTG 1 cut(s) 235
MhlI GDGCHC 6 cut(s) 382, 432, 439, 588, 834, 847
MlsI TGGCCA 1 cut(s) 449
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 8 cut(s) 154, 600, 737, 746, 873, 989, 1041, 1074
MmeI TCCRAC 2 cut(s) 63, 382
Mox20I TGGCCA 1 cut(s) 449
MroI TCCGGA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 449
MseI TTAA 1 cut(s) 924
Msp20I TGGCCA 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 433, 936
MunI CAATTG 1 cut(s) 235
MvaI CCWGG 2 cut(s) 433, 936
MwoI GCNNNNNNNGC 1 cut(s) 803
NdeII GATC 5 cut(s) 259, 457, 897, 911, 939
NlaIII CATG 3 cut(s) 721, 960, 1028
NlaIV GGNNCC 2 cut(s) 429, 438
NmeAIII GCCGAG 1 cut(s) 436
NspI RCATGY 1 cut(s) 960
PaqCI CACCTGC 1 cut(s) 599
PasI CCCWGGG 1 cut(s) 432
PceI AGGCCT 1 cut(s) 124
PkrI GCNGC 3 cut(s) 30, 102, 805
PleI GAGTC 8 cut(s) 153, 599, 737, 746, 872, 988, 1041, 1074
PmaCI CACGTG 2 cut(s) 20, 785
PmlI CACGTG 2 cut(s) 20, 785
PpsI GAGTC 8 cut(s) 153, 599, 737, 746, 872, 988, 1041, 1074
Ppu21I YACGTR 3 cut(s) 20, 785, 823
PsiI TTATAA 1 cut(s) 951
Psp124BI GAGCTC 3 cut(s) 382, 588, 834
Psp6I CCWGG 2 cut(s) 431, 934
PspCI CACGTG 2 cut(s) 20, 785
PspGI CCWGG 2 cut(s) 431, 934
PspN4I GGNNCC 2 cut(s) 429, 438
PspPI GGNCC 1 cut(s) 483
PstNI CAGNNNCTG 1 cut(s) 594
RsaI GTAC 5 cut(s) 417, 789, 821, 997, 1044
RsaNI GTAC 5 cut(s) 416, 788, 820, 996, 1043
SacI GAGCTC 3 cut(s) 382, 588, 834
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 3 cut(s) 29, 101, 804
Sau3AI GATC 5 cut(s) 259, 457, 897, 911, 939
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 8 cut(s) 154, 600, 737, 746, 873, 989, 1041, 1074
ScrFI CCNGG 2 cut(s) 433, 936
SduI GDGCHC 6 cut(s) 382, 432, 439, 588, 834, 847
SfaNI GCATC 3 cut(s) 316, 637, 705
SfcI CTRYAG 1 cut(s) 441
SmlI CTYRAG 2 cut(s) 859, 1068
SmoI CTYRAG 2 cut(s) 859, 1068
SnaBI TACGTA 1 cut(s) 823
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 5 cut(s) 9, 175, 597, 803, 806
SspMI CTAG 3 cut(s) 314, 659, 968
SstI GAGCTC 3 cut(s) 382, 588, 834
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 431, 934
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 3 cut(s) 561, 669, 1000
TaiI ACGT 3 cut(s) 22, 787, 825
TaqI TCGA 4 cut(s) 59, 346, 460, 1078
TauI GCSGC 1 cut(s) 806
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 2 cut(s) 297, 694
TseI GCWGC 2 cut(s) 28, 100
TspDTI ATGAA 3 cut(s) 99, 177, 734
TspGWI ACGGA 1 cut(s) 981
TspRI CASTG 2 cut(s) 297, 694
XapI RAATTY 3 cut(s) 527, 945, 1073
XceI RCATGY 1 cut(s) 960
XspI CTAG 3 cut(s) 314, 659, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.