Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

58550546 .. 58552641

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG446700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCAGAAGTACTGGGTTGGGAACCTAGGGCTCCAATAGTTGCCAAATGTGATCGAAAGCGGGTTCTTTCCACATGGGCTCCATATTGTGGTAACATGGTCCCTGCAGAGTTTGAAATTCAATTTTCAAGTGTCCGACAACTCACTCCACGGGAATTTGTTGAAAAGTTATTGAAAGAGTTTGGAGTTCGTGGGGTTGTGGCAGGTGAAAACTACCGATTTGGATATAAAGCAGCTGGTGATGCGAGAGAGCTGGTGAAGTTGTGTGAAGAATACGGTATGGGGGCTTACATCATAAAATCTGTTATGGACAAGAACCAACACTCCATCAGCACGAACTCAGATTCAAAAGACAGAGGACAAGTTTCATCTACTCGTGTTCGCCGCGCCCTTGCTGTAGGAGATATGAAGTATGTGTGTCAACTTTTGGGTCGCCAACACCGCATGATATTGATTGCAAAGGAGCAGGAAGGTTTCCGTTGGAGCAGACATAAATTGTCAGTTCCAAAGTCGTGCATGTTAAATTTAGGTCCAAAAGAGGGTCTATATGGGAAGTGTGATCTCTTAATTGGTGATGAAGGCGACCTAGTAGTGCCATGTAGTGTAGTAATTGACACAGCATATATCCACATAGAAATGGATGAGGTAGGTACGTATGATGATATAGTTAGTAGTAAACAGGATGTGAGGCTCTTACGTATTGAATTTGGTGATTTGGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

241

Amino Acids

27.16

Weight (kDa)

6.9

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_syn	PF06574	42 - 112	5.1e-12	FAD synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccII	CGCG	1 cut(s)	387
AciI	CCGC	3 cut(s)	61, 385, 442
AcsI	RAATTY	4 cut(s)	117, 155, 523, 704
AfaI	GTAC	2 cut(s)	12, 652
AfiI	CCNNNNNNNGG	2 cut(s)	89, 539
AgsI	TTSAA	7 cut(s)	116, 122, 129, 164, 175, 348, 704
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	236, 253
AluI	AGCT	2 cut(s)	236, 253
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	4 cut(s)	117, 155, 523, 704
AspA2I	CCTAGG	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	100, 530
AsuHPI	GGTGA	5 cut(s)	218, 251, 268, 584, 722
AvaII	GGWCC	2 cut(s)	100, 530
AvrII	CCTAGG	1 cut(s)	26
BanII	GRGCYC	2 cut(s)	34, 82
BauI	CACGAG	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	335
BfaI	CTAG	2 cut(s)	27, 587
BfmI	CTRYAG	2 cut(s)	105, 396
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	234, 385
BlnI	CCTAGG	1 cut(s)	26
BlsI	GCNGC	2 cut(s)	235, 386
BmcAI	AGTACT	1 cut(s)	12
Bme18I	GGWCC	2 cut(s)	100, 530
BmgT120I	GGNCC	2 cut(s)	100, 530
BmiI	GGNNCC	4 cut(s)	24, 33, 81, 102
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	23
BsaAI	YACGTR	2 cut(s)	654, 698
BsaJI	CCNNGG	2 cut(s)	26, 149
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 539
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	26, 149
BseGI	GGATG	2 cut(s)	646, 688
BseLI	CCNNNNNNNGG	2 cut(s)	89, 539
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	89, 539
BsmFI	GGGAC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	34, 82
Bsp143I	GATC	2 cut(s)	52, 559
BspACI	CCGC	3 cut(s)	61, 385, 442
BspCNI	CTCAG	1 cut(s)	353
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	4 cut(s)	24, 33, 81, 102
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	26, 149
BssMI	GATC	2 cut(s)	52, 559
BssSI	CACGAG	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	278
BstBAI	YACGTR	2 cut(s)	654, 698
BstDEI	CTNAG	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	646, 688
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	2 cut(s)	55, 562
BstMBI	GATC	2 cut(s)	52, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 441
BstNSI	RCATGY	1 cut(s)	520
BstSFI	CTRYAG	2 cut(s)	105, 396
BstSNI	TACGTA	2 cut(s)	654, 698
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	646, 688
BveI	ACCTGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	100, 530
Csp6I	GTAC	2 cut(s)	11, 651
CviAII	CATG	5 cut(s)	75, 97, 445, 517, 597
CviJI	RGCY	6 cut(s)	32, 80, 236, 253, 287, 691
CviKI_1	RGCY	6 cut(s)	32, 80, 236, 253, 287, 691
CviQI	GTAC	2 cut(s)	11, 651
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	2 cut(s)	54, 561
DpnII	GATC	2 cut(s)	52, 559
Eco105I	TACGTA	2 cut(s)	654, 698
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	2 cut(s)	34, 82
Eco47I	GGWCC	2 cut(s)	100, 530
EcoT14I	CCWWGG	1 cut(s)	26
EcoT38I	GRGCYC	2 cut(s)	34, 82
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	5 cut(s)	78, 100, 448, 520, 600
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	5 cut(s)	74, 96, 444, 516, 596
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	234, 385
FokI	GGATG	2 cut(s)	653, 695
FriOI	GRGCYC	2 cut(s)	34, 82
Fsp4HI	GCNGC	2 cut(s)	234, 385
FspBI	CTAG	2 cut(s)	27, 587
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	2 cut(s)	234, 385
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	5 cut(s)	78, 100, 448, 520, 600
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HinfI	GANTC	2 cut(s)	344, 719
HphI	GGTGA	5 cut(s)	218, 251, 268, 584, 722
Hpy166II	GTNNAC	2 cut(s)	422, 677
Hpy188I	TCNGA	2 cut(s)	137, 343
Hpy188III	TCNNGA	1 cut(s)	723
Hpy8I	GTNNAC	2 cut(s)	422, 677
HpyAV	CCTTC	2 cut(s)	464, 572
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	653, 697
HpyCH4V	TGCA	3 cut(s)	107, 458, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 441
HpyF3I	CTNAG	1 cut(s)	340
HpySE526I	ACGT	2 cut(s)	653, 697
Hsp92II	CATG	5 cut(s)	78, 100, 448, 520, 600
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	52, 559
LmnI	GCTCC	4 cut(s)	37, 85, 463, 483
LpnPI	CCDG	6 cut(s)	117, 189, 222, 239, 452, 665
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	27, 587
MaeII	ACGT	2 cut(s)	653, 697
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	54, 561
MboI	GATC	2 cut(s)	52, 559
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	34, 82
MluCI	AATT	8 cut(s)	117, 122, 155, 494, 523, 567, 609, 704
MmeI	TCCRAC	2 cut(s)	160, 461
MnlI	CCTC	4 cut(s)	350, 532, 637, 681
MseI	TTAA	2 cut(s)	521, 566
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	242, 441
NdeII	GATC	2 cut(s)	52, 559
NlaIII	CATG	5 cut(s)	78, 100, 448, 520, 600
NlaIV	GGNNCC	4 cut(s)	24, 33, 81, 102
NspI	RCATGY	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	344, 719
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	235, 386
Ppu21I	YACGTR	2 cut(s)	654, 698
PspN4I	GGNNCC	4 cut(s)	24, 33, 81, 102
PspPI	GGNCC	2 cut(s)	100, 530
PstI	CTGCAG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	12, 652
RsaNI	GTAC	2 cut(s)	11, 651
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	521, 566
SatI	GCNGC	2 cut(s)	234, 385
Sau3AI	GATC	2 cut(s)	52, 559
Sau96I	GGNCC	2 cut(s)	100, 530
ScaI	AGTACT	1 cut(s)	12
SduI	GDGCHC	2 cut(s)	34, 82
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	2 cut(s)	105, 396
SinI	GGWCC	2 cut(s)	100, 530
SmiMI	CAYNNNNRTG	1 cut(s)	635
SnaBI	TACGTA	2 cut(s)	654, 698
Sse9I	AATT	8 cut(s)	117, 122, 155, 494, 523, 567, 609, 704
SsiI	CCGC	3 cut(s)	61, 385, 442
SspMI	CTAG	2 cut(s)	27, 587
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	2 cut(s)	656, 700
TaqI	TCGA	1 cut(s)	55
TasI	AATT	8 cut(s)	117, 122, 155, 494, 523, 567, 609, 704
TatI	WGTACW	1 cut(s)	10
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	344, 719
Tru1I	TTAA	2 cut(s)	521, 566
Tru9I	TTAA	2 cut(s)	521, 566
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	357, 422, 591
TspGWI	ACGGA	1 cut(s)	467
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	100, 530
XapI	RAATTY	4 cut(s)	117, 155, 523, 704
XceI	RCATGY	1 cut(s)	520
XmaJI	CCTAGG	1 cut(s)	26
XspI	CTAG	2 cut(s)	27, 587
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.