Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002784.1

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Reverse (-)

40510 .. 42163

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002784.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggcctatgggggatttatgaaggatggagctaagtggttggtggagaacactgaaatccttctttgtatgcagttatctcctaaggagttgaagcacctgaaggttttgaggatggcagtgatttacatgatgatgtgtgtgctgaatctgtacgagtacaaaaagaaaaacttggggcctctgagattgattgtgtggactatggaggttgcgcgctatgatcaatattgttgctccaatctactggagattcaaaggagtgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

89

Amino Acids

10.48

Weight (kDa)

8.95

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	2 cut(s)	155, 161
AgsI	TTSAA	2 cut(s)	94, 257
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AoxI	GGCC	2 cut(s)	3, 179
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	217, 219
AspS9I	GGNCC	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	84
BccI	CCATC	2 cut(s)	20, 109
BclI	TGATCA	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	252
Bse21I	CCTNAGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	31, 120
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	252
BsePI	GCGCGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	5, 181
BsnI	GGCC	2 cut(s)	5, 181
Bsp143I	GATC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	5, 181
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	252
BssHII	GCGCGC	1 cut(s)	215
BssMI	GATC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	3 cut(s)	33, 84, 185
BstF5I	GGATG	2 cut(s)	31, 120
BstFNI	CGCG	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	217, 219
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	5, 181
BtsCI	GGATG	2 cut(s)	31, 120
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	51, 126
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	2 cut(s)	217, 219
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	154, 160
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	3 cut(s)	5, 32, 181
CviKI_1	RGCY	3 cut(s)	5, 32, 181
CviQI	GTAC	2 cut(s)	154, 160
DdeI	CTNAG	3 cut(s)	33, 84, 185
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	179
FaeI	CATG	1 cut(s)	133
FaiI	YATR	6 cut(s)	9, 20, 71, 131, 206, 222
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	2 cut(s)	38, 127
GlaI	GCGC	2 cut(s)	216, 218
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	5, 181
HhaI	GCGC	2 cut(s)	217, 219
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	2 cut(s)	215, 217
HinP1I	GCGC	2 cut(s)	215, 217
HinfI	GANTC	2 cut(s)	148, 253
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	3 cut(s)	16, 71, 97
HpyCH4V	TGCA	1 cut(s)	73
HpyF3I	CTNAG	3 cut(s)	33, 84, 185
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	2 cut(s)	215, 217
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	29, 242
LpnPI	CCDG	2 cut(s)	113, 233
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	105, 192, 202
MroXI	GAANNNNTTC	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	217
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	180
PauI	GCGCGC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	148, 253
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	179
PteI	GCGCGC	1 cut(s)	215
RsaI	GTAC	2 cut(s)	155, 161
RsaNI	GTAC	2 cut(s)	154, 160
RseI	CAYNNNNRTG	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	179
SetI	ASST	4 cut(s)	34, 102, 108, 213
SgeI	CNNG	6 cut(s)	112, 142, 169, 187, 228, 260
SmiMI	CAYNNNNRTG	1 cut(s)	134
SspI	AATATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	148, 253
TscAI	CASTG	2 cut(s)	58, 126
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	58, 126
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.