Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

7854056 .. 7855813

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTTATGCGGAGGCTCTCGCGCCTCCGTGCATTTGTGGGACCATCGTCATCCTCCTAGGCTCGGTGCTAAGGTTTTGCGGAAATCTTCGTTCATGCTCAGACCTTGTTCGGCTATATCGCAGCAGCGGATAAAGTCGTCGTTTAGGTCTCACTGTAAAACTCCAAGAAAAATCCCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATCATCCTGAGCTTTCAGCTGAAGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATATCGGTCATCGAGAGCTTGCAATTCAAGCTGCAAGAATTGGTACTCCGTATCTACTGTCGTTTGTTGGATTGGCTGAAGTACTTGGTTGGAAGCCTAGAGCACCAATAGTAGCCAAATGCGACAGAAAACGAGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTTTGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAACAGTTTGTCGAGAAGTTGTCAAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGCTTCTGGTGACGCCTCTGAACTTGTGAGGTTATGCAAAGACTTTGGTATCAGCGCTTACATCATTAACTCCGTGATGGATAAGAACCAAGTCTCTGTAAACACAGAGGAGGAGGACTCAAAGTCGAAAGAAAGAGGTCAAGTCTCATCCACACGAGTCCGTCATGCTCTAGCTGCAGGAGATGTGAGGTATGTAACAGAGCTCCTCGGCAGACCACACAGGGTCATCTCTCGGACAAGAACACAAGATTTAACGAGCAAAAGAGGGAGGATCTCGCTTCAGACATCTTCGCTACTAAATTTACCACCAGGGAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCCAATTTCGTGTAAGGTTATTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAACGTTTCCACAACTCAGATGAGTCTCAAGAGTTTCAACTCTTAGGGATTGAGTTCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

354

Amino Acids

39.21

Weight (kDa)

9.14

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_syn	PF06574	85 - 226	2.1e-14	FAD synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccII	CGCG	1 cut(s)	21
AciI	CCGC	4 cut(s)	9, 79, 127, 549
AclI	AACGTT	1 cut(s)	1006
AclWI	GGATC	1 cut(s)	866
AcsI	RAATTY	2 cut(s)	479, 886
AcuI	CTGAAG	3 cut(s)	249, 384, 851
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	2 cut(s)	331, 369
AfeI	AGCGCT	1 cut(s)	643
AfiI	CCNNNNNNNGG	3 cut(s)	62, 248, 902
AgeI	ACCGGT	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	314, 479, 1040
AhdI	GACNNNNNGTC	1 cut(s)	709
AjnI	CCWGG	2 cut(s)	198, 895
AluBI	AGCT	8 cut(s)	179, 220, 227, 304, 317, 538, 761, 790
AluI	AGCT	8 cut(s)	179, 220, 227, 304, 317, 538, 761, 790
Alw21I	GWGCWC	2 cut(s)	391, 792
Alw26I	GTCTC	4 cut(s)	153, 685, 736, 1032
AlwI	GGATC	1 cut(s)	866
Aor51HI	AGCGCT	1 cut(s)	643
ApeKI	GCWGC	4 cut(s)	121, 124, 317, 761
ApoI	RAATTY	2 cut(s)	479, 886
AsiGI	ACCGGT	1 cut(s)	460
AspA2I	CCTAGG	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	23, 644
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	608, 947
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	56
BaeI	ACNNNNGTAYC	2 cut(s)	619, 652
BanII	GRGCYC	1 cut(s)	792
BauI	CACGAG	1 cut(s)	741
Bbv12I	GWGCWC	2 cut(s)	391, 792
BbvI	GCAGC	4 cut(s)	133, 136, 304, 748
BccI	CCATC	2 cut(s)	51, 658
BciT130I	CCWGG	2 cut(s)	200, 897
BciVI	GTATCC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	4 cut(s)	153, 685, 736, 1032
BfaI	CTAG	4 cut(s)	57, 266, 384, 758
BfmI	CTRYAG	1 cut(s)	762
BfoI	RGCGCY	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	575
BisI	GCNGC	4 cut(s)	122, 125, 318, 762
BlnI	CCTAGG	1 cut(s)	56
BlsI	GCNGC	4 cut(s)	123, 126, 319, 763
BmcAI	AGTACT	1 cut(s)	369
Bme1390I	CCNGG	3 cut(s)	200, 587, 897
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	3 cut(s)	200, 587, 897
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	3 cut(s)	268, 446, 952
BmuI	ACTGGG	1 cut(s)	236
BoxI	GACNNNNGTC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
Bpu10I	CCTNAGC	2 cut(s)	69, 216
BpuEI	CTTGAG	1 cut(s)	1014
BpuMI	CCSGG	1 cut(s)	587
BsaBI	GATNNNNATC	2 cut(s)	210, 942
BsaHI	GRCGYC	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	4 cut(s)	56, 199, 793, 896
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 248, 902
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	2 cut(s)	210, 942
BseBI	CCWGG	2 cut(s)	200, 897
BseDI	CCNNGG	4 cut(s)	56, 199, 793, 896
BseGI	GGATG	4 cut(s)	49, 211, 734, 943
BseJI	GATNNNNATC	2 cut(s)	210, 942
BseLI	CCNNNNNNNGG	3 cut(s)	62, 248, 902
BseMII	CTCAG	3 cut(s)	112, 207, 1032
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	4 cut(s)	171, 710, 713, 782
BseXI	GCAGC	4 cut(s)	133, 136, 304, 748
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	21
BshTI	ACCGGT	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	391, 792
BsiSI	CCGG	2 cut(s)	461, 586
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	62, 248, 902
BsmAI	GTCTC	4 cut(s)	153, 685, 736, 1032
BsmFI	GGGAC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	391, 792
Bsp143I	GATC	2 cut(s)	208, 858
BspACI	CCGC	4 cut(s)	9, 79, 127, 549
BspCNI	CTCAG	3 cut(s)	111, 208, 1031
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	1 cut(s)	866
BspTNI	GGTCTC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	4 cut(s)	56, 199, 793, 896
BssMI	GATC	2 cut(s)	208, 858
BssNI	GRCGYC	1 cut(s)	600
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	200, 897
Bst4CI	ACNGT	3 cut(s)	155, 345, 513
BstACI	GRCGYC	1 cut(s)	600
BstC8I	GCNNGC	5 cut(s)	306, 487, 562, 919, 923
BstDEI	CTNAG	6 cut(s)	69, 98, 216, 539, 1018, 1045
BstF5I	GGATG	4 cut(s)	49, 211, 734, 943
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	23, 644
BstKTI	GATC	2 cut(s)	211, 861
BstMAI	GTCTC	4 cut(s)	153, 685, 736, 1032
BstMBI	GATC	2 cut(s)	208, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 761
BstNI	CCWGG	2 cut(s)	200, 897
BstNSI	RCATGY	1 cut(s)	921
BstPAI	GACNNNNGTC	1 cut(s)	45
BstSCI	CCNGG	3 cut(s)	198, 585, 895
BstSFI	CTRYAG	1 cut(s)	762
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	4 cut(s)	133, 136, 304, 748
BstX2I	RGATCY	1 cut(s)	858
BstYI	RGATCY	1 cut(s)	858
BsuI	GTATCC	1 cut(s)	575
BtsCI	GGATG	4 cut(s)	49, 211, 734, 943
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	5 cut(s)	306, 487, 562, 919, 923
CfoI	GCGC	2 cut(s)	23, 644
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	2 cut(s)	330, 368
CspAI	ACCGGT	1 cut(s)	460
CviAII	CATG	3 cut(s)	94, 752, 918
CviQI	GTAC	2 cut(s)	330, 368
DdeI	CTNAG	6 cut(s)	69, 98, 216, 539, 1018, 1045
DpnI	GATC	2 cut(s)	210, 860
DpnII	GATC	2 cut(s)	208, 858
DriI	GACNNNNNGTC	1 cut(s)	709
Eam1105I	GACNNNNNGTC	1 cut(s)	709
Ecl136II	GAGCTC	1 cut(s)	790
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	40
Eco47III	AGCGCT	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	790
Eco57I	CTGAAG	3 cut(s)	249, 384, 851
EcoICRI	GAGCTC	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	198, 895
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	3 cut(s)	97, 755, 921
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	93, 751, 917
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	122, 125, 318, 762
FokI	GGATG	4 cut(s)	36, 198, 721, 930
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	4 cut(s)	122, 125, 318, 762
FspBI	CTAG	4 cut(s)	57, 266, 384, 758
GlaI	GCGC	2 cut(s)	22, 643
GluI	GCNGC	4 cut(s)	122, 125, 318, 762
GsaI	CCCAGC	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	645
HapII	CCGG	2 cut(s)	461, 586
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	2 cut(s)	23, 644
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	97, 755, 921
Hin6I	GCGC	2 cut(s)	21, 642
HinP1I	GCGC	2 cut(s)	21, 642
HinfI	GANTC	5 cut(s)	543, 704, 744, 979, 1025
HpaII	CCGG	2 cut(s)	461, 586
HphI	GGTGA	2 cut(s)	608, 947
Hpy166II	GTNNAC	2 cut(s)	688, 910
Hpy188I	TCNGA	5 cut(s)	101, 607, 822, 870, 1021
Hpy188III	TCNNGA	6 cut(s)	185, 215, 299, 520, 531, 1031
Hpy8I	GTNNAC	2 cut(s)	688, 910
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	3 cut(s)	155, 345, 513
HpyCH4IV	ACGT	1 cut(s)	1006
HpyCH4V	TGCA	7 cut(s)	31, 248, 286, 308, 320, 624, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 761
HpyF3I	CTNAG	6 cut(s)	69, 98, 216, 539, 1018, 1045
HpySE526I	ACGT	1 cut(s)	1006
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	3 cut(s)	97, 755, 921
HspAI	GCGC	2 cut(s)	21, 642
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	208, 858
LmnI	GCTCC	2 cut(s)	184, 795
Lsp1109I	GCAGC	4 cut(s)	133, 136, 304, 748
LweI	GCATC	3 cut(s)	268, 446, 952
MaeI	CTAG	4 cut(s)	57, 266, 384, 758
MaeII	ACGT	1 cut(s)	1006
MaeIII	GTNAC	3 cut(s)	449, 596, 781
MalI	GATC	2 cut(s)	210, 860
MboI	GATC	2 cut(s)	208, 858
MboII	GAAGA	3 cut(s)	78, 867, 1013
MflI	RGATCY	1 cut(s)	858
MhlI	GDGCHC	2 cut(s)	391, 792
MluCI	AATT	6 cut(s)	309, 324, 479, 568, 886, 948
MlyI	GAGTC	4 cut(s)	552, 698, 753, 1034
MmeI	TCCRAC	2 cut(s)	334, 356
MseI	TTAA	4 cut(s)	501, 654, 839, 1063
MspA1I	CMGCKG	2 cut(s)	127, 227
MspI	CCGG	2 cut(s)	461, 586
MspR9I	CCNGG	3 cut(s)	200, 587, 897
MvaI	CCWGG	2 cut(s)	200, 897
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	314, 761
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	2 cut(s)	208, 858
NlaIII	CATG	3 cut(s)	97, 755, 921
NlaIV	GGNNCC	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	774
NmuCI	GTSAC	1 cut(s)	596
NspI	RCATGY	1 cut(s)	921
PaeI	GCATGC	1 cut(s)	921
PfeI	GAWTC	1 cut(s)	979
PflMI	CCANNNNNTGG	1 cut(s)	902
PinAI	ACCGGT	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	123, 126, 319, 763
PleI	GAGTC	4 cut(s)	551, 698, 752, 1033
PpsI	GAGTC	4 cut(s)	551, 698, 752, 1033
PshAI	GACNNNNGTC	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	792
Psp1406I	AACGTT	1 cut(s)	1006
Psp6I	CCWGG	2 cut(s)	198, 895
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	2 cut(s)	198, 895
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	858
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	331, 369
RsaNI	GTAC	2 cut(s)	330, 368
SacI	GAGCTC	1 cut(s)	792
SaqAI	TTAA	4 cut(s)	501, 654, 839, 1063
SatI	GCNGC	4 cut(s)	122, 125, 318, 762
Sau3AI	GATC	2 cut(s)	208, 858
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	369
SchI	GAGTC	4 cut(s)	552, 698, 753, 1034
ScrFI	CCNGG	3 cut(s)	200, 587, 897
SduI	GDGCHC	2 cut(s)	391, 792
SfaNI	GCATC	3 cut(s)	268, 446, 952
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	1029
SmoI	CTYRAG	1 cut(s)	1029
SphI	GCATGC	1 cut(s)	921
Sse9I	AATT	6 cut(s)	309, 324, 479, 568, 886, 948
SsiI	CCGC	4 cut(s)	9, 79, 127, 549
SspMI	CTAG	4 cut(s)	57, 266, 384, 758
SstI	GAGCTC	1 cut(s)	792
StyD4I	CCNGG	3 cut(s)	198, 585, 895
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	3 cut(s)	155, 345, 513
TaiI	ACGT	1 cut(s)	1009
TaqI	TCGA	7 cut(s)	186, 298, 493, 519, 713, 969, 977
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	6 cut(s)	309, 324, 479, 568, 886, 948
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	979
Tru1I	TTAA	4 cut(s)	501, 654, 839, 1063
Tru9I	TTAA	4 cut(s)	501, 654, 839, 1063
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	4 cut(s)	121, 124, 317, 761
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	4 cut(s)	16, 324, 649, 737
TspRI	CASTG	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	479, 886
XceI	RCATGY	1 cut(s)	921
XmaJI	CCTAGG	1 cut(s)	56
XspI	CTAG	4 cut(s)	57, 266, 384, 758
ZrmI	AGTACT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.