RchiOBHm_Chr2g0144991

HORMA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003257
Physical Location & Seq
Reverse (-)
62550832 .. 62551596
765 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51486

Sequence Viewer

Length: 270 bp
ATGGCAGTGATTTACATAATGATGTTTGTGTTGAATCTGTACGAGTACGCGAAGAAGAACTTGGGGCATCTGAGATCGATTGTGTGGACTGTGGAGTTTGCTATGATCAATATTGTTGCTCCAATCTACCAGAGATTTGAAGGAGTGCCTGATGATTTCCTTGGCTTACTCAACATGAAGTGCTTATATGGATGGGGAAGAGAAAAAGAATATGGTTGTTACTCAATTCGAATCTGTGGATGCGAGGAGGTGCTTTCCATGTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HORMA NIF REF

Protein Analysis

89

Amino Acids

10.34

Weight (kDa)

5.72

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
REF PF05755 1 - 60 1.2e-14 Rubber elongation factor protein (REF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AfaI GTAC 2 cut(s) 41, 47
AgsI TTSAA 2 cut(s) 34, 140
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AsuII TTCGAA 1 cut(s) 229
BccI CCATC 1 cut(s) 186
BclI TGATCA 1 cut(s) 105
BmsI GCATC 2 cut(s) 76, 230
Bpu14I TTCGAA 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 197, 245
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 229
Bsp143I GATC 2 cut(s) 74, 105
BspCNI CTCAG 1 cut(s) 63
BspDI ATCGAT 1 cut(s) 77
BspFNI CGCG 1 cut(s) 50
BspT104I TTCGAA 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 74, 105
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 197, 245
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 2 cut(s) 77, 108
BstMBI GATC 2 cut(s) 74, 105
BstUI CGCG 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 77
BsuTUI ATCGAT 1 cut(s) 77
BtsCI GGATG 2 cut(s) 197, 245
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
ClaI ATCGAT 1 cut(s) 77
Csp6I GTAC 2 cut(s) 40, 46
CviAII CATG 2 cut(s) 175, 259
CviJI RGCY 1 cut(s) 165
CviKI_1 RGCY 1 cut(s) 165
CviQI GTAC 2 cut(s) 40, 46
DdeI CTNAG 1 cut(s) 71
DpnI GATC 2 cut(s) 76, 107
DpnII GATC 2 cut(s) 74, 105
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 178, 262
FaiI YATR 7 cut(s) 17, 104, 176, 187, 189, 213, 260
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 2 cut(s) 174, 258
FbaI TGATCA 1 cut(s) 105
FokI GGATG 2 cut(s) 204, 252
Hin1II CATG 2 cut(s) 178, 262
HinfI GANTC 2 cut(s) 34, 231
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 178, 262
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 74, 105
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 2 cut(s) 143, 162
LweI GCATC 2 cut(s) 76, 230
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 76, 107
MboI GATC 2 cut(s) 74, 105
MboII GAAGA 3 cut(s) 64, 67, 210
MluCI AATT 1 cut(s) 225
MnlI CCTC 2 cut(s) 238, 241
MslI CAYNNNNRTG 1 cut(s) 20
MvnI CGCG 1 cut(s) 50
NdeII GATC 2 cut(s) 74, 105
NlaIII CATG 2 cut(s) 178, 262
NspV TTCGAA 1 cut(s) 229
PfeI GAWTC 2 cut(s) 34, 231
RsaI GTAC 2 cut(s) 41, 47
RsaNI GTAC 2 cut(s) 40, 46
RseI CAYNNNNRTG 1 cut(s) 20
Sau3AI GATC 2 cut(s) 74, 105
SetI ASST 1 cut(s) 252
SfaNI GCATC 2 cut(s) 76, 230
SfuI TTCGAA 1 cut(s) 229
SgeI CNNG 8 cut(s) 55, 61, 73, 142, 161, 173, 187, 256
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 1 cut(s) 225
SspI AATATT 1 cut(s) 112
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 77, 229
TasI AATT 1 cut(s) 225
TfiI GAWTC 2 cut(s) 34, 231
TscAI CASTG 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.