Rorug01G0193900

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
27030695 .. 27035390
4696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0193900.1

Sequence Viewer

Length: 657 bp
ATGGGAGGTGGAAAAGACAAAAATAATGATACTACTGACAGAGGGCTACTCTCAAGTCTTGCTGGATTTGCTGCTGGACACAAGCCGCGCCCTGGATCACATTCTCATCAAGGACACGGATATCCCCCACAAGGATATGCACCACCTGGGTACCCTCCTTCTGGCGGGTATCCTCCCTCTGACGGTTACCCTCCCTCTGGCGGATACCCTCCTTCAGATGGCTACCCTCCTCAAAGTGGGTATCCCCCATCTGGAAATCCTCCCCCTATGGGATATCCACCAGCCGGCTATCCTGCCCCTAGTGGATATCCACCAGCCGGCTATCCTGCCCCTAGCGGATATCCACCAGCCGACTATCCTGCCCCTAGCGGATATCCACCAGCTGGTTATCCAGGTCCATCAGCTCCACATAAATCAGGGCATGGATCTGGTATGGGAATGGGAGCTATGCTAGCCGGTGGTGCTGCTGCGGCCGCTGCAGGTTATGGGGTTCACCATCTTGTGCATGGTAGTAGTCATGGAAGAGGTTCCCATGGCTTTGGTTTTGGGGGTCACCATGGCTTTGGTCATGGGAAATTTGGAAAGCATCATGGGGGGAAGTTCAAGCATGGGAAATTTGGAAAGCACCATGGGGGAAAGTTCAAGAAATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

218

Amino Acids

21.85

Weight (kDa)

9.68

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 470
Acc65I GGTACC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 383
AccII CGCG 1 cut(s) 88
AciI CCGC 7 cut(s) 86, 165, 201, 336, 369, 470, 474
AclWI GGATC 2 cut(s) 103, 433
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 2 cut(s) 575, 614
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 2 cut(s) 604, 643
AjnI CCWGG 3 cut(s) 91, 145, 391
AluBI AGCT 3 cut(s) 383, 404, 446
AluI AGCT 3 cut(s) 383, 404, 446
AlwI GGATC 2 cut(s) 103, 433
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 4 cut(s) 71, 464, 467, 476
ApoI RAATTY 2 cut(s) 575, 614
Asp700I GAANNNNTTC 1 cut(s) 526
Asp718I GGTACC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 485, 545
AsuNHI GCTAGC 1 cut(s) 451
AvaII GGWCC 1 cut(s) 395
BaeI ACNNNNGTAYC 2 cut(s) 134, 167
BanI GGYRCC 1 cut(s) 150
BbvI GCAGC 4 cut(s) 58, 451, 454, 463
BccI CCATC 4 cut(s) 212, 256, 406, 504
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 3 cut(s) 93, 147, 393
BciVI GTATCC 3 cut(s) 180, 197, 252
BfaI CTAG 4 cut(s) 300, 333, 366, 452
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 470
BfuI GTATCC 3 cut(s) 180, 197, 252
BisI GCNGC 7 cut(s) 72, 86, 465, 468, 471, 474, 477
BlsI GCNGC 7 cut(s) 73, 87, 466, 469, 472, 475, 478
Bme1390I CCNGG 3 cut(s) 93, 147, 393
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 152, 529
BmrFI CCNGG 3 cut(s) 93, 147, 393
BmsI GCATC 1 cut(s) 595
BmtI GCTAGC 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpuEI CTTGAG 1 cut(s) 37
BsaJI CCNNGG 5 cut(s) 91, 146, 532, 556, 628
Bse118I RCCGGY 3 cut(s) 284, 317, 455
BseBI CCWGG 3 cut(s) 93, 147, 393
BseDI CCNNGG 5 cut(s) 91, 146, 532, 556, 628
BseRI GAGGAG 1 cut(s) 219
BseX3I CGGCCG 1 cut(s) 471
BseXI GCAGC 4 cut(s) 58, 451, 454, 463
Bsh1236I CGCG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 474
BshFI GGCC 1 cut(s) 473
BshNI GGYRCC 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 474
BsiSI CCGG 3 cut(s) 285, 318, 456
BsnI GGCC 1 cut(s) 473
Bsp143I GATC 2 cut(s) 95, 425
Bsp19I CCATGG 3 cut(s) 532, 556, 628
BspACI CCGC 7 cut(s) 86, 165, 201, 336, 369, 470, 474
BspANI GGCC 1 cut(s) 473
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 152, 529
BspMAI CTGCAG 1 cut(s) 481
BspMI ACCTGC 1 cut(s) 470
BspOI GCTAGC 1 cut(s) 455
BspPI GGATC 2 cut(s) 103, 433
BspT107I GGYRCC 1 cut(s) 150
BsrFI RCCGGY 3 cut(s) 284, 317, 455
BssAI RCCGGY 3 cut(s) 284, 317, 455
BssECI CCNNGG 5 cut(s) 91, 146, 532, 556, 628
BssMI GATC 2 cut(s) 95, 425
BssT1I CCWWGG 3 cut(s) 532, 556, 628
Bst2UI CCWGG 3 cut(s) 93, 147, 393
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 517
BstC8I GCNNGC 3 cut(s) 286, 319, 453
BstDSI CCRYGG 3 cut(s) 532, 556, 628
BstEII GGTNACC 2 cut(s) 185, 551
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 98, 428
BstMBI GATC 2 cut(s) 95, 425
BstMCI CGRYCG 1 cut(s) 474
BstMWI GCNNNNNNNGC 6 cut(s) 68, 452, 461, 470, 473, 476
BstNI CCWGG 3 cut(s) 93, 147, 393
BstPI GGTNACC 2 cut(s) 185, 551
BstSCI CCNGG 3 cut(s) 91, 145, 391
BstSFI CTRYAG 1 cut(s) 477
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 4 cut(s) 58, 451, 454, 463
BstX2I RGATCY 1 cut(s) 425
BstXI CCANNNNNNTGG 2 cut(s) 539, 563
BstYI RGATCY 1 cut(s) 425
BstZI CGGCCG 1 cut(s) 471
BsuI GTATCC 3 cut(s) 180, 197, 252
BsuRI GGCC 1 cut(s) 473
BtgI CCRYGG 3 cut(s) 532, 556, 628
BveI ACCTGC 1 cut(s) 470
Cac8I GCNNGC 3 cut(s) 286, 319, 453
CciNI GCGGCCGC 1 cut(s) 471
CfoI GCGC 1 cut(s) 90
Cfr10I RCCGGY 3 cut(s) 284, 317, 455
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 151
CviAII CATG 9 cut(s) 422, 506, 518, 533, 557, 569, 590, 608, 629
CviQI GTAC 1 cut(s) 151
DpnI GATC 2 cut(s) 97, 427
DpnII GATC 2 cut(s) 95, 425
EaeI YGGCCR 1 cut(s) 471
EagI CGGCCG 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
EciI GGCGGA 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 471
Eco130I CCWWGG 3 cut(s) 532, 556, 628
Eco32I GATATC 5 cut(s) 122, 275, 308, 341, 374
Eco47I GGWCC 1 cut(s) 395
Eco52I CGGCCG 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 198
Eco91I GGTNACC 2 cut(s) 185, 551
EcoO65I GGTNACC 2 cut(s) 185, 551
EcoRII CCWGG 3 cut(s) 91, 145, 391
EcoRV GATATC 5 cut(s) 122, 275, 308, 341, 374
EcoT14I CCWWGG 3 cut(s) 532, 556, 628
ErhI CCWWGG 3 cut(s) 532, 556, 628
FaeI CATG 9 cut(s) 425, 509, 521, 536, 560, 572, 593, 611, 632
FatI CATG 9 cut(s) 421, 505, 517, 532, 556, 568, 589, 607, 628
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 7 cut(s) 72, 86, 465, 468, 471, 474, 477
Fsp4HI GCNGC 7 cut(s) 72, 86, 465, 468, 471, 474, 477
FspBI CTAG 4 cut(s) 300, 333, 366, 452
GlaI GCGC 1 cut(s) 89
GluI GCNGC 7 cut(s) 72, 86, 465, 468, 471, 474, 477
HaeIII GGCC 1 cut(s) 473
HapII CCGG 3 cut(s) 285, 318, 456
HhaI GCGC 1 cut(s) 90
Hin1II CATG 9 cut(s) 425, 509, 521, 536, 560, 572, 593, 611, 632
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HpaII CCGG 3 cut(s) 285, 318, 456
HphI GGTGA 2 cut(s) 485, 545
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 2 cut(s) 181, 217
Hpy188III TCNNGA 2 cut(s) 252, 643
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 2 cut(s) 168, 222
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 140, 479, 505
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 452, 461, 470, 473, 476
Hsp92II CATG 9 cut(s) 425, 509, 521, 536, 560, 572, 593, 611, 632
HspAI GCGC 1 cut(s) 88
KpnI GGTACC 1 cut(s) 154
KroI GCCGGC 2 cut(s) 284, 317
KroNI GCCGGC 2 cut(s) 286, 319
Kzo9I GATC 2 cut(s) 95, 425
LmnI GCTCC 2 cut(s) 409, 443
Lsp1109I GCAGC 4 cut(s) 58, 451, 454, 463
LweI GCATC 1 cut(s) 595
MaeI CTAG 4 cut(s) 300, 333, 366, 452
MaeIII GTNAC 2 cut(s) 185, 551
MalI GATC 2 cut(s) 97, 427
MboI GATC 2 cut(s) 95, 425
MboII GAAGA 1 cut(s) 534
MflI RGATCY 1 cut(s) 425
MluCI AATT 2 cut(s) 575, 614
MroNI GCCGGC 2 cut(s) 284, 317
MroXI GAANNNNTTC 1 cut(s) 526
MspA1I CMGCKG 2 cut(s) 383, 476
MspI CCGG 3 cut(s) 285, 318, 456
MspR9I CCNGG 3 cut(s) 93, 147, 393
MvaI CCWGG 3 cut(s) 93, 147, 393
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 6 cut(s) 68, 452, 461, 470, 473, 476
NaeI GCCGGC 2 cut(s) 286, 319
NcoI CCATGG 3 cut(s) 532, 556, 628
NdeII GATC 2 cut(s) 95, 425
NgoMIV GCCGGC 2 cut(s) 284, 317
NheI GCTAGC 1 cut(s) 451
NlaIII CATG 9 cut(s) 425, 509, 521, 536, 560, 572, 593, 611, 632
NlaIV GGNNCC 2 cut(s) 152, 529
NmuCI GTSAC 1 cut(s) 551
NotI GCGGCCGC 1 cut(s) 471
PdiI GCCGGC 2 cut(s) 286, 319
PdmI GAANNNNTTC 1 cut(s) 526
PflMI CCANNNNNTGG 1 cut(s) 383
PkrI GCNGC 7 cut(s) 73, 87, 466, 469, 472, 475, 478
Psp6I CCWGG 3 cut(s) 91, 145, 391
PspEI GGTNACC 2 cut(s) 185, 551
PspGI CCWGG 3 cut(s) 91, 145, 391
PspN4I GGNNCC 2 cut(s) 152, 529
PspPI GGNCC 1 cut(s) 395
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SatI GCNGC 7 cut(s) 72, 86, 465, 468, 471, 474, 477
Sau3AI GATC 2 cut(s) 95, 425
Sau96I GGNCC 1 cut(s) 395
ScrFI CCNGG 3 cut(s) 93, 147, 393
SetI ASST 8 cut(s) 10, 148, 385, 397, 406, 448, 484, 529
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 575, 614
SsiI CCGC 7 cut(s) 86, 165, 201, 336, 369, 470, 474
SspMI CTAG 4 cut(s) 300, 333, 366, 452
StyD4I CCNGG 3 cut(s) 91, 145, 391
StyI CCWWGG 3 cut(s) 532, 556, 628
TaaI ACNGT 1 cut(s) 185
TasI AATT 2 cut(s) 575, 614
TauI GCSGC 3 cut(s) 88, 473, 476
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 4 cut(s) 71, 464, 467, 476
Tsp45I GTSAC 1 cut(s) 551
TspGWI ACGGA 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 2 cut(s) 575, 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 4 cut(s) 300, 333, 366, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.