Rw0G013740

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00617
OG0000143
Physical Location & Seq
Forward (+)
18740 .. 19997
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013740.1

Sequence Viewer

Length: 915 bp
ATGATAAGATTTGTGAAGTGGTTTGAGGAACAGAGTGATGAGAATAAGAAACAACTTCTATTGAAGTTAGAAGAGATCATGAATCCGAGTTCTACATCACTTAGAGAGCCACAAGTGAAAATCAATAATCGAGGGCGTCCACGTAAAGAAGATAGTTCCACTCGTCGTTTACCTTCTGCCTTTGAGTATATGAATGCATTTTCAGGCCATGATAGTCATTTATCGGATCCTACAGTTGGGTCTAGAGCTCAAGGAAAAAATTTGAAGAAGCATTCAAAGAATCAAAGAGAAGGAAGGACCAAAGAGTCGGCATCATCCATAAAAAGGCAAAACAAAGAGTTTAAAAATTCAAAACAAAAGCAATACATTGCAAACCAAACTGATGTTGATATGAATGGAAATTGTGGATATAGAGTCGTTGCTATCTCAATGGGGTTTGGTCACGATGGTTGGCACCACATTTTTGGGGCTAGACGGTTTCATGAACTAGAGAATTGCCTTGACTATTTTGTTGATGGGTTTGCACCTGAAAACTTTTGGATGACCATGCCTGATATGGGACATATTATTGCCACATGTTATGGTGTGACAGTAATCCATTTATCATCCACCATGTGCATTACATTTCTTCCTTTGTATAATAGGAATGAATGTCGAAATGAATATCGTGGTGATTGCGAGGGTGGTGAGTTTGCAATTGGATATGTTGGCCGTCATTTTGTTAAGGTAAATTTGATATCTCAATCTGTTCCAATTCCTCCAGTTACTCCTCTATGGCACAGGTACCAAGTTAATAATGGACAGTTGTACAACATTTATGAGCAACGCATAGATCAATTCAAGAAACTCGAAAATATGGAAGACGTTGCCACCACAGATACATTTGCAGACATTGTGCATCTTGATATCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

304

Amino Acids

35.18

Weight (kDa)

7.68

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
Acc65I GGTACC 1 cut(s) 783
AccB1I GGYRCC 2 cut(s) 453, 783
AclWI GGATC 2 cut(s) 221, 234
AcoI YGGCCR 1 cut(s) 709
AcsI RAATTY 3 cut(s) 259, 346, 730
AcyI GRCGYC 1 cut(s) 136
AdeI CACNNNGTG 1 cut(s) 615
AfaI GTAC 2 cut(s) 785, 809
AfiI CCNNNNNNNGG 3 cut(s) 236, 324, 557
AflIII ACRYGT 1 cut(s) 575
AgsI TTSAA 5 cut(s) 64, 265, 276, 351, 841
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 250
AlwI GGATC 2 cut(s) 221, 234
AoxI GGCC 2 cut(s) 205, 709
ApoI RAATTY 3 cut(s) 259, 346, 730
Asp718I GGTACC 1 cut(s) 783
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 683, 698
AvaII GGWCC 1 cut(s) 297
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 2 cut(s) 453, 783
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 867
Bbv12I GWGCWC 1 cut(s) 250
BccI CCATC 2 cut(s) 440, 509
BceAI ACGGC 1 cut(s) 696
BfaI CTAG 3 cut(s) 243, 471, 488
BfmI CTRYAG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 3 cut(s) 228, 455, 785
BmsI GCATC 2 cut(s) 320, 907
BpiI GAAGAC 1 cut(s) 867
BpmI CTGGAG 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 234
Bsa29I ATCGAT 1 cut(s) 909
BsaAI YACGTR 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 136
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 324, 557
Bse1I ACTGG 1 cut(s) 761
Bse3DI GCAATG 1 cut(s) 366
BseCI ATCGAT 1 cut(s) 909
BseGI GGATG 3 cut(s) 314, 546, 605
BseLI CCNNNNNNNGG 3 cut(s) 236, 324, 557
BseMI GCAATG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 761
BseRI GAGGAG 1 cut(s) 759
BshFI GGCC 2 cut(s) 207, 711
BshNI GGYRCC 2 cut(s) 453, 783
BshVI ATCGAT 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 3 cut(s) 236, 324, 557
BsmFI GGGAC 1 cut(s) 573
BsmI GAATGC 2 cut(s) 199, 271
BsnI GGCC 2 cut(s) 207, 711
Bsp1286I GDGCHC 1 cut(s) 250
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 3 cut(s) 75, 226, 832
BspANI GGCC 2 cut(s) 207, 711
BspDI ATCGAT 1 cut(s) 909
BspHI TCATGA 2 cut(s) 78, 481
BspLI GGNNCC 3 cut(s) 228, 455, 785
BspPI GGATC 2 cut(s) 221, 234
BspT107I GGYRCC 2 cut(s) 453, 783
BsrDI GCAATG 1 cut(s) 366
BsrGI TGTACA 1 cut(s) 807
BsrI ACTGG 1 cut(s) 761
BssMI GATC 3 cut(s) 75, 226, 832
BssNI GRCGYC 1 cut(s) 136
Bst4CI ACNGT 4 cut(s) 235, 477, 592, 804
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 136
BstAUI TGTACA 1 cut(s) 807
BstBAI YACGTR 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 314, 546, 605
BstKTI GATC 3 cut(s) 78, 229, 835
BstMBI GATC 3 cut(s) 75, 226, 832
BstNSI RCATGY 1 cut(s) 579
BstSFI CTRYAG 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 867
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 909
BsuRI GGCC 2 cut(s) 207, 711
BsuTUI ATCGAT 1 cut(s) 909
BtsCI GGATG 3 cut(s) 314, 546, 605
CciI TCATGA 2 cut(s) 78, 481
Cfr13I GGNCC 1 cut(s) 297
ClaI ATCGAT 1 cut(s) 909
CseI GACGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 784, 808
CviAII CATG 6 cut(s) 79, 209, 482, 547, 576, 613
CviJI RGCY 5 cut(s) 109, 207, 248, 470, 711
CviKI_1 RGCY 5 cut(s) 109, 207, 248, 470, 711
CviQI GTAC 2 cut(s) 784, 808
DdeI CTNAG 1 cut(s) 101
DpnI GATC 3 cut(s) 77, 228, 834
DpnII GATC 3 cut(s) 75, 226, 832
DraI TTTAAA 1 cut(s) 343
DraIII CACNNNGTG 1 cut(s) 615
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 709
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 250
Eco32I GATATC 2 cut(s) 738, 907
Eco47I GGWCC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 248
EcoRV GATATC 2 cut(s) 738, 907
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 6 cut(s) 82, 212, 485, 550, 579, 616
FaqI GGGAC 1 cut(s) 573
FatI CATG 6 cut(s) 78, 208, 481, 546, 575, 612
FokI GGATG 3 cut(s) 301, 553, 592
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 3 cut(s) 243, 471, 488
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 2 cut(s) 207, 711
HgaI GACGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 6 cut(s) 82, 212, 485, 550, 579, 616
HinfI GANTC 4 cut(s) 82, 280, 305, 414
HphI GGTGA 2 cut(s) 683, 698
Hpy166II GTNNAC 2 cut(s) 140, 170
Hpy188I TCNGA 2 cut(s) 87, 226
Hpy188III TCNNGA 6 cut(s) 79, 243, 443, 482, 841, 902
Hpy8I GTNNAC 2 cut(s) 140, 170
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 3 cut(s) 183, 284, 288
HpyCH4III ACNGT 4 cut(s) 235, 477, 592, 804
HpyCH4IV ACGT 2 cut(s) 142, 864
HpyCH4V TGCA 7 cut(s) 197, 371, 524, 618, 695, 887, 898
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 2 cut(s) 142, 864
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 6 cut(s) 82, 212, 485, 550, 579, 616
KpnI GGTACC 1 cut(s) 787
Kzo9I GATC 3 cut(s) 75, 226, 832
LpnPI CCDG 5 cut(s) 189, 540, 564, 766, 774
LweI GCATC 2 cut(s) 320, 907
MaeI CTAG 3 cut(s) 243, 471, 488
MaeII ACGT 2 cut(s) 142, 864
MaeIII GTNAC 3 cut(s) 440, 586, 763
MalI GATC 3 cut(s) 77, 228, 834
MboI GATC 3 cut(s) 75, 226, 832
MboII GAAGA 5 cut(s) 83, 161, 277, 620, 872
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 8 cut(s) 259, 346, 400, 493, 696, 730, 753, 836
MlyI GAGTC 2 cut(s) 314, 423
MnlI CCTC 5 cut(s) 19, 125, 673, 768, 780
Mph1103I ATGCAT 1 cut(s) 199
MseI TTAA 3 cut(s) 342, 723, 792
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 2 cut(s) 199, 271
NdeII GATC 3 cut(s) 75, 226, 832
NlaIII CATG 6 cut(s) 82, 212, 485, 550, 579, 616
NlaIV GGNNCC 3 cut(s) 228, 455, 785
NmuCI GTSAC 2 cut(s) 440, 586
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 1 cut(s) 579
PagI TCATGA 2 cut(s) 78, 481
PciI ACATGT 1 cut(s) 575
PctI GAATGC 2 cut(s) 199, 271
PfeI GAWTC 2 cut(s) 82, 280
PleI GAGTC 2 cut(s) 313, 422
PpsI GAGTC 2 cut(s) 313, 422
Ppu21I YACGTR 1 cut(s) 143
PscI ACATGT 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 228, 455, 785
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 785, 809
RsaNI GTAC 2 cut(s) 784, 808
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 3 cut(s) 342, 723, 792
Sau3AI GATC 3 cut(s) 75, 226, 832
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 2 cut(s) 314, 423
SduI GDGCHC 1 cut(s) 250
SetI ASST 7 cut(s) 145, 175, 250, 529, 729, 785, 867
SfaNI GCATC 2 cut(s) 320, 907
SfcI CTRYAG 1 cut(s) 231
SinI GGWCC 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
Sse9I AATT 8 cut(s) 259, 346, 400, 493, 696, 730, 753, 836
SspMI CTAG 3 cut(s) 243, 471, 488
SstI GAGCTC 1 cut(s) 250
TaaI ACNGT 4 cut(s) 235, 477, 592, 804
TaiI ACGT 2 cut(s) 145, 867
TaqI TCGA 4 cut(s) 130, 655, 849, 909
TasI AATT 8 cut(s) 259, 346, 400, 493, 696, 730, 753, 836
TatI WGTACW 1 cut(s) 807
TfiI GAWTC 2 cut(s) 82, 280
Tru1I TTAA 3 cut(s) 342, 723, 792
Tru9I TTAA 3 cut(s) 342, 723, 792
TseFI GTSAC 2 cut(s) 440, 586
Tsp45I GTSAC 2 cut(s) 440, 586
TspDTI ATGAA 7 cut(s) 95, 206, 407, 470, 498, 663, 675
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 3 cut(s) 259, 346, 730
XbaI TCTAGA 1 cut(s) 242
XceI RCATGY 1 cut(s) 579
XcmI CCANNNNNNNNNTGG 2 cut(s) 553, 794
XspI CTAG 3 cut(s) 243, 471, 488
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.