Rmu_sc0012591.1_g000006

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012591.1
OG0000143
Physical Location & Seq
Reverse (-)
15682 .. 16797
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012591.1_g000006.1.cds

Sequence Viewer

Length: 1044 bp
atggaagaagagcccctggatgctgggttgcaaatttctatgtcttcagatgatatggaagaagacttacaatcaaatcacccgtctagtatcattgaagtccccattgtcaatggcccctctatgattgatgttactgatgaattcctctcgttatcggcaaaattttttgaaaatcgagaagaccttgtcagtgctattcgtaagattgggttgctgcaagggtacgttatggtaatcaaaagatctagaagcaatagagatgtggctattggttgtgatagaggtggttgttatcgaacctgctctgcacttgaggaaaagaaaaagaattcagcttctcgtctgatagattgccctttcaaaattgtgggaagaaggacagttgaagggttgtggaaggtcgagataagtagcttgttacataaccatgagccttccactgacatggctggacatccatattgtcgtcggtttactaaagaggaagccttacaagttgaacaaatgagtcgggctggcataaaaccacgtcaaattctctcttcgcttcgacaaaataatcctgatcttctagctatttccagaaatatatatagcaagacagctcagtttaggagggagagtctaggtgggcgttcgattattcaagcattattagatgagcttggtggtgctggtttttcttataatgtcaaatatgatcactctggtcatttgactcatctattctttgctcatcctacttccattgagttgactaaaagctactctaatgtctttgtgatggattgtacttataagacaaataagtacaagatgccattacttgagattgtaggagtgtcgagtttcaacacatcattctattcatgttttgtcttcatgcaaaaagaggaacaacaggataatcagtgggctcttgaaatgttcagtaagttgttgggagatagtaatcatccattggcgattataactgatagggagttggcattaatgaatgcaatacaagtttgcctcattttatactggctcatgtcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

347

Amino Acids

39.33

Weight (kDa)

6.02

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 690, 801, 974
Acc36I ACCTGC 1 cut(s) 311
AcsI RAATTY 5 cut(s) 33, 143, 164, 331, 537
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 3 cut(s) 227, 796, 815
AgsI TTSAA 8 cut(s) 98, 173, 364, 389, 503, 650, 856, 926
AjiI CACGTC 1 cut(s) 533
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 6 cut(s) 338, 417, 578, 608, 667, 768
AluI AGCT 6 cut(s) 338, 417, 578, 608, 667, 768
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 5 cut(s) 33, 143, 164, 331, 537
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AseI ATTAAT 1 cut(s) 995
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 71
BanII GRGCYC 2 cut(s) 15, 922
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BbsI GAAGAC 4 cut(s) 36, 69, 189, 874
BbvI GCAGC 1 cut(s) 204
BccI CCATC 1 cut(s) 781
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 1 cut(s) 703
BfaI CTAG 4 cut(s) 87, 249, 575, 629
BfuAI ACCTGC 1 cut(s) 311
BglII AGATCT 1 cut(s) 245
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 2 cut(s) 10, 810
BpiI GAAGAC 4 cut(s) 36, 69, 189, 874
BpuEI CTTGAG 2 cut(s) 335, 851
BsaBI GATNNNNATC 1 cut(s) 954
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bse1I ACTGG 1 cut(s) 1034
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 4 cut(s) 25, 457, 739, 958
BseJI GATNNNNATC 1 cut(s) 954
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 1 cut(s) 1034
BseXI GCAGC 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 1 cut(s) 117
BslFI GGGAC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 1006
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 15, 922
Bsp143I GATC 3 cut(s) 245, 568, 703
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 3
BsrI ACTGG 1 cut(s) 1034
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 3 cut(s) 245, 568, 703
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 2 cut(s) 3, 550
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 1 cut(s) 609
BstF5I GGATG 4 cut(s) 25, 457, 739, 958
BstKTI GATC 3 cut(s) 248, 571, 706
BstMBI GATC 3 cut(s) 245, 568, 703
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 204
BstV2I GAAGAC 4 cut(s) 36, 69, 189, 874
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 4 cut(s) 25, 457, 739, 958
BtsIMutI CAGTG 3 cut(s) 199, 441, 920
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 3 cut(s) 226, 795, 814
CviAII CATG 5 cut(s) 431, 448, 873, 886, 1036
CviQI GTAC 3 cut(s) 226, 795, 814
DdeI CTNAG 1 cut(s) 609
DpnI GATC 3 cut(s) 247, 570, 705
DpnII GATC 3 cut(s) 245, 568, 703
Eam1104I CTCTTC 2 cut(s) 3, 550
EarI CTCTTC 2 cut(s) 3, 550
Eco24I GRGCYC 2 cut(s) 15, 922
Eco57I CTGAAG 1 cut(s) 30
EcoRI GAATTC 2 cut(s) 143, 331
EcoRII CCWGG 1 cut(s) 15
EcoT38I GRGCYC 2 cut(s) 15, 922
FaeI CATG 5 cut(s) 434, 451, 876, 889, 1039
FaqI GGGAC 1 cut(s) 86
FatI CATG 5 cut(s) 430, 447, 872, 885, 1035
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 4 cut(s) 32, 444, 726, 945
FriOI GRGCYC 2 cut(s) 15, 922
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 4 cut(s) 87, 249, 575, 629
GluI GCNGC 1 cut(s) 218
GsaI CCCAGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 5 cut(s) 434, 451, 876, 889, 1039
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HinfI GANTC 3 cut(s) 511, 625, 721
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 477, 759
Hpy188I TCNGA 2 cut(s) 49, 348
Hpy188III TCNNGA 6 cut(s) 179, 249, 406, 566, 585, 923
Hpy8I GTNNAC 2 cut(s) 477, 759
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 4 cut(s) 372, 383, 394, 447
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 228, 532
HpyCH4V TGCA 5 cut(s) 31, 220, 311, 889, 1004
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 2 cut(s) 228, 532
Hsp92II CATG 5 cut(s) 434, 451, 876, 889, 1039
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 3 cut(s) 245, 568, 703
LguI GCTCTTC 1 cut(s) 3
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 2 cut(s) 10, 810
MaeI CTAG 4 cut(s) 87, 249, 575, 629
MaeII ACGT 2 cut(s) 228, 532
MaeIII GTNAC 2 cut(s) 133, 420
MalI GATC 3 cut(s) 247, 570, 705
MboI GATC 3 cut(s) 245, 568, 703
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 2 cut(s) 15, 922
MluCI AATT 6 cut(s) 33, 143, 164, 331, 366, 537
MlyI GAGTC 3 cut(s) 520, 634, 715
MnlI CCTC 8 cut(s) 130, 158, 278, 310, 478, 612, 889, 1028
MseI TTAA 1 cut(s) 995
MslI CAYNNNNRTG 2 cut(s) 429, 446
MspR9I CCNGG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 1006
MvaI CCWGG 1 cut(s) 17
NdeII GATC 3 cut(s) 245, 568, 703
NlaIII CATG 5 cut(s) 434, 451, 876, 889, 1039
NlaIV GGNNCC 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 3
PctI GAATGC 1 cut(s) 1006
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 219
PleI GAGTC 3 cut(s) 519, 633, 715
PpsI GAGTC 3 cut(s) 519, 633, 715
PshBI ATTAAT 1 cut(s) 995
PsiI TTATAA 3 cut(s) 690, 801, 974
Psp6I CCWGG 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 245
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 3 cut(s) 227, 796, 815
RsaNI GTAC 3 cut(s) 226, 795, 814
RseI CAYNNNNRTG 2 cut(s) 429, 446
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 1 cut(s) 995
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 3 cut(s) 245, 568, 703
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 3 cut(s) 520, 634, 715
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 15, 922
SfaNI GCATC 2 cut(s) 10, 810
SmiMI CAYNNNNRTG 2 cut(s) 429, 446
SmlI CTYRAG 2 cut(s) 314, 830
SmoI CTYRAG 2 cut(s) 314, 830
Sse9I AATT 6 cut(s) 33, 143, 164, 331, 366, 537
SspMI CTAG 4 cut(s) 87, 249, 575, 629
StyD4I CCNGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 2 cut(s) 231, 535
TaqI TCGA 6 cut(s) 178, 298, 405, 553, 641, 848
TasI AATT 6 cut(s) 33, 143, 164, 331, 366, 537
TatI WGTACW 2 cut(s) 794, 813
Tru1I TTAA 1 cut(s) 995
Tru9I TTAA 1 cut(s) 995
TscAI CASTG 3 cut(s) 199, 448, 920
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 156, 861, 874, 1013
TspRI CASTG 3 cut(s) 199, 448, 920
Tth111I GACNNNGTC 1 cut(s) 188
VspI ATTAAT 1 cut(s) 995
XapI RAATTY 5 cut(s) 33, 143, 164, 331, 537
XbaI TCTAGA 1 cut(s) 248
XspI CTAG 4 cut(s) 87, 249, 575, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.