Rmu_sc0003242.1_g000011

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003242.1
OG0000143
Physical Location & Seq
Reverse (-)
60438 .. 61616
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003242.1_g000011.1.cds

Sequence Viewer

Length: 1179 bp
atgcaaaacaatctagtagtggttactatgaggtctgattctggaggtgttggaaaaagacagaagagacctcgaataacattttgttgtgaaataagtggtgagtataggccaagaaactctaatcgtacaaatgatacaaattttggttctgaaagtaggaaaggaaagcgtcaacacccaaggaaaactggtaccaaaaaatgtagatgcccattcttattaaggggattgaatgttggcgatggaaatgaatggaagctagaagttgcatgtggagtgcataatcataatgcttcaaaatatctccagggacatagttatgctgggagattgactaaagaacaaagtttgctcttagtggaaatgtctaaaaatttcgtgcgacctaagcaaattttgaccaccataaagaacaaagttgggttgaatgtgtcaacaatgaagacaatatacaatgctagacaaaggtataagacacaagagttggctggaagaacacaaatgcaacaattgttacgtaaattgtctgatcacaactatatcgagcatcatagaagtattggacccgatcaggttctgtctgacatgttttggactcaccccacaaatgttgatattttacgttcatttccgcatgtagttataatggactgcacctacaagactaataggtaccgttttccactattagagattgtgggggtgacttcaactaacatcacattcactgttgcatttgcataccttaattcagagaaggaagataatttcacatgggctttgtctaggttgaaggagctgtttaatgatgatcttcctcatgtgttagtcacagatagagacttggcgcttatgaatgctatacgtaaaatatttcctactagccatcatatgttgtgtacatggcatattaataatggggtgcttgcaaaatgcagtagcatgtttgataccaaagaaaggtgggagatgtttaatgattcttggcaattcgtgatcaattccaataataaggaggagtatctggagaggctaaagtcatttgaatttagatataaaacatattcagatgctattacctatttgaaggacacttggttagtgcacaaggaaaagtttgtatcagcatggacaaataagtttctacattttggtactactacttcaaataggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

392

Amino Acids

45.81

Weight (kDa)

9.69

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
Acc65I GGTACC 2 cut(s) 194, 675
AccB1I GGYRCC 2 cut(s) 194, 675
AciI CCGC 1 cut(s) 635
AcsI RAATTY 4 cut(s) 142, 376, 396, 1049
AfaI GTAC 5 cut(s) 130, 196, 677, 904, 1159
AfiI CCNNNNNNNGG 1 cut(s) 963
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 8 cut(s) 235, 300, 430, 714, 796, 1049, 1090, 1170
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 2 cut(s) 262, 802
AluI AGCT 2 cut(s) 262, 802
Alw21I GWGCWC 1 cut(s) 1110
Alw26I GTCTC 2 cut(s) 61, 837
Alw44I GTGCAC 1 cut(s) 1106
AlwNI CAGNNNCTG 1 cut(s) 580
AoxI GGCC 1 cut(s) 110
ApaLI GTGCAC 1 cut(s) 1106
ApoI RAATTY 4 cut(s) 142, 376, 396, 1049
AseI ATTAAT 1 cut(s) 915
Asp718I GGTACC 2 cut(s) 194, 675
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 3 cut(s) 113, 593, 718
AvaII GGWCC 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 1110
BanI GGYRCC 2 cut(s) 194, 675
BarI GAAGNNNNNNTAC 3 cut(s) 437, 469, 1150
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 1110
BccI CCATC 2 cut(s) 239, 897
BciT130I CCWGG 1 cut(s) 311
BclI TGATCA 2 cut(s) 532, 999
BcoDI GTCTC 2 cut(s) 61, 837
BfaI CTAG 5 cut(s) 14, 263, 462, 789, 885
BfoI RGCGCY 1 cut(s) 854
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 3 cut(s) 196, 568, 677
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 3 cut(s) 200, 559, 1063
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 3 cut(s) 63, 293, 1049
Bpu10I CCTNAGC 1 cut(s) 390
BsaAI YACGTR 2 cut(s) 521, 869
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 182, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 963
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 182, 310
BseLI CCNNNNNNNGG 1 cut(s) 963
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 1034
BseSI GKGCMC 1 cut(s) 1110
BseYI CCCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 640
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 2 cut(s) 194, 675
BsiHKAI GWGCWC 1 cut(s) 1110
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 963
BsmAI GTCTC 2 cut(s) 61, 837
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 1110
Bsp1407I TGTACA 1 cut(s) 902
Bsp143I GATC 4 cut(s) 532, 571, 814, 999
BspACI CCGC 1 cut(s) 635
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 3 cut(s) 196, 568, 677
BspT107I GGYRCC 2 cut(s) 194, 675
BspTNI GGTCTC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 902
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 182, 310
BssMI GATC 4 cut(s) 532, 571, 814, 999
BssT1I CCWWGG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 680, 733
Bst6I CTCTTC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 902
BstBAI YACGTR 2 cut(s) 521, 869
BstC8I GCNNGC 1 cut(s) 930
BstDEI CTNAG 2 cut(s) 358, 390
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 4 cut(s) 535, 574, 817, 1002
BstMAI GTCTC 2 cut(s) 61, 837
BstMBI GATC 4 cut(s) 532, 571, 814, 999
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 4 cut(s) 276, 592, 641, 949
BstSCI CCNGG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 1110
BstSNI TACGTA 2 cut(s) 521, 869
BstV2I GAAGAC 1 cut(s) 452
BsuRI GGCC 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 930
CaiI CAGNNNCTG 1 cut(s) 580
CfoI GCGC 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 1 cut(s) 161
Csp6I GTAC 5 cut(s) 129, 195, 676, 903, 1158
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 8 cut(s) 273, 589, 638, 777, 824, 906, 946, 1131
CviJI RGCY 7 cut(s) 112, 262, 491, 782, 802, 888, 1036
CviKI_1 RGCY 7 cut(s) 112, 262, 491, 782, 802, 888, 1036
CviQI GTAC 5 cut(s) 129, 195, 676, 903, 1158
DdeI CTNAG 2 cut(s) 358, 390
DpnI GATC 4 cut(s) 534, 573, 816, 1001
DpnII GATC 4 cut(s) 532, 571, 814, 999
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco105I TACGTA 2 cut(s) 521, 869
Eco130I CCWWGG 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 8 cut(s) 276, 592, 641, 780, 827, 909, 949, 1134
FaqI GGGAC 1 cut(s) 327
FatI CATG 8 cut(s) 272, 588, 637, 776, 823, 905, 945, 1130
FauNDI CATATG 1 cut(s) 894
FbaI TGATCA 2 cut(s) 532, 999
FspBI CTAG 5 cut(s) 14, 263, 462, 789, 885
GlaI GCGC 1 cut(s) 852
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 3 cut(s) 63, 293, 1049
HaeII RGCGCY 1 cut(s) 854
HaeIII GGCC 1 cut(s) 112
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 853
Hin1II CATG 8 cut(s) 276, 592, 641, 780, 827, 909, 949, 1134
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HincII GTYRAC 2 cut(s) 176, 438
HindII GTYRAC 2 cut(s) 176, 438
HinfI GANTC 3 cut(s) 38, 598, 983
HphI GGTGA 3 cut(s) 113, 593, 718
Hpy166II GTNNAC 4 cut(s) 176, 438, 903, 1108
Hpy188I TCNGA 6 cut(s) 37, 154, 532, 586, 757, 1072
Hpy188III TCNNGA 3 cut(s) 42, 997, 1028
Hpy8I GTNNAC 4 cut(s) 176, 438, 903, 1108
HpyAV CCTTC 3 cut(s) 754, 790, 1084
HpyCH4III ACNGT 2 cut(s) 680, 733
HpyCH4IV ACGT 3 cut(s) 520, 625, 868
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 2 cut(s) 358, 390
HpySE526I ACGT 3 cut(s) 520, 625, 868
Hsp92II CATG 8 cut(s) 276, 592, 641, 780, 827, 909, 949, 1134
HspAI GCGC 1 cut(s) 851
KpnI GGTACC 2 cut(s) 198, 679
Ksp22I TGATCA 2 cut(s) 532, 999
Kzo9I GATC 4 cut(s) 532, 571, 814, 999
LmnI GCTCC 1 cut(s) 799
LpnPI CCDG 8 cut(s) 27, 177, 296, 312, 323, 477, 560, 1013
LweI GCATC 3 cut(s) 200, 559, 1063
MaeI CTAG 5 cut(s) 14, 263, 462, 789, 885
MaeII ACGT 3 cut(s) 520, 625, 868
MaeIII GTNAC 4 cut(s) 22, 516, 706, 832
MalI GATC 4 cut(s) 534, 573, 816, 1001
MboI GATC 4 cut(s) 532, 571, 814, 999
MboII GAAGA 5 cut(s) 76, 457, 507, 776, 809
MfeI CAATTG 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 1110
MlyI GAGTC 1 cut(s) 592
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 6 cut(s) 24, 38, 81, 831, 1012, 1026
MseI TTAA 5 cut(s) 224, 750, 807, 915, 978
MslI CAYNNNNRTG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 391
NdeI CATATG 1 cut(s) 894
NdeII GATC 4 cut(s) 532, 571, 814, 999
NlaIII CATG 8 cut(s) 276, 592, 641, 780, 827, 909, 949, 1134
NlaIV GGNNCC 3 cut(s) 196, 568, 677
NmuCI GTSAC 2 cut(s) 706, 832
NspI RCATGY 4 cut(s) 276, 592, 641, 949
PciI ACATGT 1 cut(s) 588
PctI GAATGC 1 cut(s) 865
PfeI GAWTC 2 cut(s) 38, 983
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Ppu21I YACGTR 2 cut(s) 521, 869
PscI ACATGT 1 cut(s) 588
PshBI ATTAAT 1 cut(s) 915
PsiI TTATAA 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 196, 568, 677
PspPI GGNCC 1 cut(s) 566
PstNI CAGNNNCTG 1 cut(s) 580
RsaI GTAC 5 cut(s) 130, 196, 677, 904, 1159
RsaNI GTAC 5 cut(s) 129, 195, 676, 903, 1158
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 5 cut(s) 224, 750, 807, 915, 978
Sau3AI GATC 4 cut(s) 532, 571, 814, 999
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 1110
SfaNI GCATC 3 cut(s) 200, 559, 1063
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 321
SnaBI TACGTA 2 cut(s) 521, 869
SsiI CCGC 1 cut(s) 635
SspI AATATT 1 cut(s) 876
SspMI CTAG 5 cut(s) 14, 263, 462, 789, 885
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 2 cut(s) 680, 733
TaiI ACGT 3 cut(s) 523, 628, 871
TaqI TCGA 2 cut(s) 73, 546
TatI WGTACW 1 cut(s) 902
TfiI GAWTC 2 cut(s) 38, 983
Tru1I TTAA 5 cut(s) 224, 750, 807, 915, 978
Tru9I TTAA 5 cut(s) 224, 750, 807, 915, 978
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 2 cut(s) 706, 832
Tsp45I GTSAC 2 cut(s) 706, 832
TspDTI ATGAA 4 cut(s) 267, 458, 618, 872
TspRI CASTG 1 cut(s) 736
VneI GTGCAC 1 cut(s) 1106
VpaK11BI GGWCC 1 cut(s) 566
VspI ATTAAT 1 cut(s) 915
XapI RAATTY 4 cut(s) 142, 376, 396, 1049
XceI RCATGY 4 cut(s) 276, 592, 641, 949
XspI CTAG 5 cut(s) 14, 263, 462, 789, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.