Rroxscaffold_4G00321040

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000143
Physical Location & Seq
Reverse (-)
50091552 .. 50104516
12965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321040.1

Sequence Viewer

Length: 2739 bp
ATGCAGCATCAAATCATCATCTATGACGACTCTAAGGATGAAAAGGGTGATACTTCTAGTCGAGGTAGTGGGGTTGGGTCTGATACTGCAATGGATTCCACGACTCAATCTAGTACTCATGAGGCCAACACTTCTACTCGAGGTAGTGAGGTCAACTCAGAATGTGTAATGGATTTCACAAGTGAATTTACTACTTATGAGATTTTCAAGAGTAGAGAATCCTTGATGCTGTGGGCTCGTGAGGCCGGGAAACGAAACGGGTTTGTCGTTGTGACGGTACGATCTGATTTGGGTGGTAAAAGTTTGAAACCAAGAGTTACATTAGGGTGTGAGCGTGGTGGAAAATTTAAGGTTCACAAAGAAAGATGTGATAAAGGTGGGAAGCAAAGATGTGGGACTGGCAGCAAGAAGTGTGGCTGTCCTTTCACATTAAAGGGAGAGAAGTTAACAACTGGTGATGGATGGATGCTAAAGGTAGTATGTGGAGTGCACAATCATGCCTTAACCGAGTCTCTTGAAGGGCACTCATATGCAGGGAGGTTGTCTGAGGAGGAGACTTCACTCTTGATAGACTTATCAAAGAGTTTAGTACGACCCAAAGAAATCTTGACCAAATTGAAGCAAAGGGATTCACTCAATGTTACAACTATAAGAACTATCTACAATGCACGCCAGAGGCAAAGAGTTAAAGAGAAAGCAGGGAGGTCTCAAATGGAACAACTTTTATGTAAGTTGAATGAGCATAATTATCTTGAGTGGCACAGGAGTTGCCCTATTTCAGGGAGTGTGCTGGACTTGTTTTGGGCACACCCTGTGAGCTTGGAATTGTTACGTGTATTTCCAACCATCTTGATGATGGATTGCACTTTTAAAACCAATAGGTATCGTTATCCTCTCCTAGAGGTTGTAGGTGTGACATCTACTAATATGACATTCTCAGTTGCATTTGTATTTTTGGATTCTGAAAAAGAAGATAATTATGTGTGGGCCTTGAATAGATTACGTGATGTGTTGGATGGGTGTGCTATGCCCAATGTTATTGTCACAGACAAGGATTTGGAATTGATGAGAGCCGTTGAGATGGTATTTCCTTCAGCTAGACATATGCTGTGCAAATGGCATATCAATAAGAATGTGTTGGCAAAATGCAGAAATCTGTTTGAGTCCAAGGAAAAGTGGGATAGATTTATTATGAAGTGGAATGTGCTTGTGATGTCACCTACTGAAGAAGACTACATACAAGAGCTAGCAGTGCTACAGAGTGAATTTAGTAATTACACAGAGGTCTTGGACTATGTTACAAACACTTGGTTGAATCCTTTCAAGGACCGATTTGTGTCGGCCTGGACAGACGTAATCATGCATTTTGGTAATGTGGCATCAAACAGGGCGGAGAGTGCACATTCTAAGCTTAAGAGGCAACTTGGTTTGAGTCAGGGGAATTTTGAGGGTTCTTTTGAGAAGATACACGCTCTACTTGAGTTACAACACACTGACATTAAGGCATCTTTCGAGAAATGTTTGACTGTTGTACGACATAGCTCCTTGCCTTTAGAATTCAAACACCTAAGAGGAGTAGTTTCTACTTTTGCATTGGACAAGGTATTATCTCAGTTTAAGCTAGCCACCTCAATTGGAATTGATGATTTTCATTGTGGTTGTGTCATACGTCGCACCCATGGTTTACCTTGTGCCCATGAAATTGCCAAATATAAGAGGGATTGTCAACCAATTCCGCTCGATTCTCTTGACCCCCATTGGAGGAAACTTCATATGTCACCCTCTTCTGATCCTATTAATGATAATATGGATGTTAATGAATTTCCTGAGTTGGAGTTGCTTCAACAGTACTTTTTAAAGACAAGTGCTGATAATCGGTTGATGCTGCGGAAAAGAGTGAGAGAACTTGTACCATCCCTAGCAACTCTTATTGAACCAGGGGTGAAGTCCAGAACACGAGGTCAATTGAAGGAGAGAATTGATATGCCCATTCAGAAAAACGTATCTGTGTTTGAGTTAATACAATCTGCATCTGTGGATAGTCATTCACCTAGTGTGACTGGTGGTACAATGGATGTTTTGAAAAAATCAACACATAAGCAGACAGGGCCGATGAAGGAGAAGGTTTACCGGACACTCTCAGCAAAAGTTATGTCATATATCGATTCGTTTCCAGTGGGATTGATGCCTTACATAGACCAAGTCAAGGATGTATGTGATGATGGTAACTGTGGGTTTAGAGCGGTCGCTGATTTAGTAGGATTGGGCGAGAACGCATACTTGCAAGTGAGAAATGACCTACTGACTGAATTGTCTTCCTATTCTGCACATTATGGTGAGCTATACGGCAGCGCAGAGAAGGTTCGTGACTTGGCACAATCACTTTCATTCTTCAATGAGGGTAGAGCGCCATTTGACAGATGCATGACAATGCCTGACATGGGTCATCTCATAGCATCATGCTATAAGATTGTACTCTTCCACTTTTCAGCTACTCAATGCCTTACCTTCCTACCTCTTCGATCAACACCTGTTCCTTTGCCAATGCGTAGACATATTGCTATTGGTCTTGTTAATGATTCCCATTATGTTGAGGTCTTCTTAAAGCCAGGACATCCTGTACCACCCATTGAGTCTAATTGGATCAGATATCATACACAAGCTGCACAAGGGTGGGATACTATATATACTGATTGTATTGCACACTTCCAGTTGCTTGCCCGCTCGGATAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
FAR1 MULE SET

Protein Analysis

912

Amino Acids

103.44

Weight (kDa)

8.17

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 275 - 368 7.1e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 284 - 378 1.9e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2311
AccBSI CCGCTC 3 cut(s) 1738, 2243, 2724
AccI GTMKAC 1 cut(s) 2551
AciI CCGC 5 cut(s) 1391, 1736, 1888, 2243, 2722
AclWI GGATC 2 cut(s) 1784, 2651
AcsI RAATTY 6 cut(s) 185, 344, 1265, 1441, 1556, 1820
AcuI CTGAAG 2 cut(s) 1077, 1245
AdeI CACNNNGTG 2 cut(s) 814, 2054
AfaI GTAC 9 cut(s) 115, 279, 591, 1533, 1850, 1911, 2068, 2475, 2622
AfiI CCNNNNNNNGG 4 cut(s) 779, 1761, 2206, 2441
AflII CTTAAG 1 cut(s) 1412
AflIII ACRYGT 1 cut(s) 832
AjnI CCWGG 3 cut(s) 1343, 1936, 2608
AleI CACNNNNGTG 1 cut(s) 2671
AluBI AGCT 9 cut(s) 819, 1097, 1246, 1411, 1542, 1621, 2341, 2492, 2663
AluI AGCT 9 cut(s) 819, 1097, 1246, 1411, 1542, 1621, 2341, 2492, 2663
Alw21I GWGCWC 2 cut(s) 492, 1402
Alw26I GTCTC 3 cut(s) 516, 548, 711
Alw44I GTGCAC 2 cut(s) 488, 1398
AlwI GGATC 2 cut(s) 1784, 2651
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 5 cut(s) 123, 243, 987, 1341, 2108
ApaLI GTGCAC 2 cut(s) 488, 1398
ApeKI GCWGC 5 cut(s) 4, 402, 1885, 2349, 2663
ApoI RAATTY 6 cut(s) 185, 344, 1265, 1441, 1556, 1820
ArsI GACNNNNNNTTYG 2 cut(s) 2138, 2170
AseI ATTAAT 1 cut(s) 1797
Asp700I GAANNNNTTC 1 cut(s) 1319
AspLEI GCGC 2 cut(s) 2354, 2410
AspS9I GGNCC 3 cut(s) 987, 1327, 2108
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 7 cut(s) 59, 467, 1209, 1770, 1954, 2040, 2348
AsuNHI GCTAGC 2 cut(s) 1246, 1621
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 1 cut(s) 1327
BaeGI GKGCMC 5 cut(s) 492, 525, 808, 1402, 1696
BanII GRGCYC 1 cut(s) 238
BarI GAAGNNNNNNTAC 2 cut(s) 1221, 1253
BauI CACGAG 2 cut(s) 237, 1956
BbsI GAAGAC 3 cut(s) 1236, 2307, 2590
Bbv12I GWGCWC 2 cut(s) 492, 1402
BbvI GCAGC 5 cut(s) 16, 414, 1872, 2361, 2650
BccI CCATC 8 cut(s) 452, 456, 850, 854, 1010, 1075, 1921, 2216
BceAI ACGGC 2 cut(s) 1058, 2362
BciT130I CCWGG 3 cut(s) 1345, 1938, 2610
BciVI GTATCC 1 cut(s) 2671
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 3 cut(s) 516, 548, 711
BfaI CTAG 8 cut(s) 57, 111, 899, 1098, 1247, 1622, 1919, 2052
BfmI CTRYAG 1 cut(s) 1256
BfoI RGCGCY 1 cut(s) 2411
BfrI CTTAAG 1 cut(s) 1412
BfuI GTATCC 1 cut(s) 2671
BisI GCNGC 5 cut(s) 5, 403, 1886, 2350, 2664
BlsI GCNGC 5 cut(s) 6, 404, 1887, 2351, 2665
BmcAI AGTACT 2 cut(s) 115, 1850
Bme1390I CCNGG 4 cut(s) 247, 1345, 1938, 2610
Bme18I GGWCC 1 cut(s) 1327
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 3 cut(s) 987, 1327, 2108
BmrFI CCNGG 4 cut(s) 247, 1345, 1938, 2610
BmtI GCTAGC 2 cut(s) 1250, 1625
BoxI GACNNNNGTC 1 cut(s) 2442
BpiI GAAGAC 3 cut(s) 1236, 2307, 2590
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpuEI CTTGAG 2 cut(s) 773, 1499
BpuMI CCSGG 1 cut(s) 247
Bsa29I ATCGAT 1 cut(s) 2163
BsaAI YACGTR 2 cut(s) 833, 1004
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 3 cut(s) 1167, 1678, 1937
BsaWI WCCGGW 1 cut(s) 2130
Bsc4I CCNNNNNNNGG 4 cut(s) 779, 1761, 2206, 2441
Bse1I ACTGG 5 cut(s) 403, 457, 2065, 2174, 2710
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 3 cut(s) 1345, 1938, 2610
BseCI ATCGAT 1 cut(s) 2163
BseDI CCNNGG 3 cut(s) 1167, 1678, 1937
BseGI GGATG 9 cut(s) 43, 467, 471, 1021, 1816, 1913, 2080, 2215, 2614
BseLI CCNNNNNNNGG 4 cut(s) 779, 1761, 2206, 2441
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 6 cut(s) 171, 537, 951, 1625, 1818, 2154
BseNI ACTGG 5 cut(s) 403, 457, 2065, 2174, 2710
BseRI GAGGAG 3 cut(s) 563, 566, 1587
BseSI GKGCMC 5 cut(s) 492, 525, 808, 1402, 1696
BseXI GCAGC 5 cut(s) 16, 414, 1872, 2361, 2650
BsgI GTGCAG 2 cut(s) 2310, 2649
Bsh1285I CGRYCG 1 cut(s) 2247
BshFI GGCC 5 cut(s) 125, 245, 989, 1343, 2110
BshVI ATCGAT 1 cut(s) 2163
BsiEI CGRYCG 1 cut(s) 2247
BsiHKAI GWGCWC 2 cut(s) 492, 1402
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 2 cut(s) 246, 2131
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 4 cut(s) 779, 1761, 2206, 2441
BsmAI GTCTC 3 cut(s) 516, 548, 711
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 5 cut(s) 125, 245, 989, 1343, 2110
Bso31I GGTCTC 1 cut(s) 711
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 6 cut(s) 238, 492, 525, 808, 1402, 1696
Bsp143I GATC 4 cut(s) 281, 1789, 2522, 2643
Bsp19I CCATGG 1 cut(s) 1678
BspACI CCGC 5 cut(s) 1391, 1736, 1888, 2243, 2722
BspANI GGCC 5 cut(s) 125, 245, 989, 1343, 2110
BspCNI CTCAG 6 cut(s) 170, 538, 950, 1624, 1819, 2153
BspDI ATCGAT 1 cut(s) 2163
BspHI TCATGA 1 cut(s) 118
BspOI GCTAGC 2 cut(s) 1250, 1625
BspPI GGATC 2 cut(s) 1784, 2651
BspTI CTTAAG 1 cut(s) 1412
BspTNI GGTCTC 1 cut(s) 711
BsrBI CCGCTC 3 cut(s) 1738, 2243, 2724
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 5 cut(s) 403, 457, 2065, 2174, 2710
BssECI CCNNGG 3 cut(s) 1167, 1678, 1937
BssMI GATC 4 cut(s) 281, 1789, 2522, 2643
BssSI CACGAG 2 cut(s) 237, 1956
BssT1I CCWWGG 2 cut(s) 1167, 1678
Bst2BI CACGAG 2 cut(s) 237, 1956
Bst2UI CCWGG 3 cut(s) 1345, 1938, 2610
Bst4CI ACNGT 4 cut(s) 277, 1528, 1848, 2231
Bst6I CTCTTC 3 cut(s) 1789, 2483, 2523
BstAFI CTTAAG 1 cut(s) 1412
BstBAI YACGTR 2 cut(s) 833, 1004
BstC8I GCNNGC 5 cut(s) 670, 1248, 1623, 2718, 2722
BstDEI CTNAG 9 cut(s) 33, 157, 546, 937, 1407, 1568, 1611, 1827, 2140
BstDSI CCRYGG 1 cut(s) 1678
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 9 cut(s) 43, 467, 471, 1021, 1816, 1913, 2080, 2215, 2614
BstH2I RGCGCY 1 cut(s) 2411
BstHHI GCGC 2 cut(s) 2354, 2410
BstKTI GATC 4 cut(s) 284, 1792, 2525, 2646
BstMAI GTCTC 3 cut(s) 516, 548, 711
BstMBI GATC 4 cut(s) 281, 1789, 2522, 2643
BstMCI CGRYCG 1 cut(s) 2247
BstMWI GCNNNNNNNGC 5 cut(s) 242, 1252, 1397, 1417, 2107
BstNI CCWGG 3 cut(s) 1345, 1938, 2610
BstPAI GACNNNNGTC 1 cut(s) 2442
BstSCI CCNGG 4 cut(s) 245, 1343, 1936, 2608
BstSFI CTRYAG 1 cut(s) 1256
BstSLI GKGCMC 5 cut(s) 492, 525, 808, 1402, 1696
BstV1I GCAGC 5 cut(s) 16, 414, 1872, 2361, 2650
BstV2I GAAGAC 3 cut(s) 1236, 2307, 2590
Bsu15I ATCGAT 1 cut(s) 2163
BsuI GTATCC 1 cut(s) 2671
BsuRI GGCC 5 cut(s) 125, 245, 989, 1343, 2110
BsuTUI ATCGAT 1 cut(s) 2163
BtgI CCRYGG 1 cut(s) 1678
BtsCI GGATG 9 cut(s) 43, 467, 471, 1021, 1816, 1913, 2080, 2215, 2614
BtsI GCAGTG 1 cut(s) 1257
BtsIMutI CAGTG 3 cut(s) 1257, 1491, 2181
Cac8I GCNNGC 5 cut(s) 670, 1248, 1623, 2718, 2722
CciI TCATGA 1 cut(s) 118
CfoI GCGC 2 cut(s) 2354, 2410
Cfr13I GGNCC 3 cut(s) 987, 1327, 2108
ClaI ATCGAT 1 cut(s) 2163
Csp6I GTAC 9 cut(s) 114, 278, 590, 1532, 1849, 1910, 2067, 2474, 2621
CspCI CAANNNNNGTGG 4 cut(s) 394, 429, 1615, 1650
CviAII CATG 8 cut(s) 119, 497, 1360, 1679, 1697, 2425, 2440, 2460
CviQI GTAC 9 cut(s) 114, 278, 590, 1532, 1849, 1910, 2067, 2474, 2621
DdeI CTNAG 9 cut(s) 33, 157, 546, 937, 1407, 1568, 1611, 1827, 2140
DpnI GATC 4 cut(s) 283, 1791, 2524, 2645
DpnII GATC 4 cut(s) 281, 1789, 2522, 2643
DraI TTTAAA 2 cut(s) 871, 1857
DraIII CACNNNGTG 2 cut(s) 814, 2054
DrdI GACNNNNNNGTC 1 cut(s) 2311
DseDI GACNNNNNNGTC 1 cut(s) 2311
Eam1104I CTCTTC 3 cut(s) 1789, 2483, 2523
EarI CTCTTC 3 cut(s) 1789, 2483, 2523
EciI GGCGGA 1 cut(s) 1406
Eco130I CCWWGG 2 cut(s) 1167, 1678
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 711
Eco32I GATATC 1 cut(s) 2651
Eco47I GGWCC 1 cut(s) 1327
Eco57I CTGAAG 2 cut(s) 1077, 1245
Eco88I CYCGRG 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoRI GAATTC 1 cut(s) 1556
EcoRII CCWGG 3 cut(s) 1343, 1936, 2608
EcoRV GATATC 1 cut(s) 2651
EcoT14I CCWWGG 2 cut(s) 1167, 1678
EcoT22I ATGCAT 2 cut(s) 1365, 2426
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 1167, 1678
FaeI CATG 8 cut(s) 122, 500, 1363, 1682, 1700, 2428, 2443, 2463
FaqI GGGAC 1 cut(s) 409
FatI CATG 8 cut(s) 118, 496, 1359, 1678, 1696, 2424, 2439, 2459
FauI CCCGC 1 cut(s) 2729
FauNDI CATATG 3 cut(s) 529, 1104, 1773
FblI GTMKAC 1 cut(s) 2551
Fnu4HI GCNGC 5 cut(s) 5, 403, 1886, 2350, 2664
FokI GGATG 9 cut(s) 50, 474, 478, 1028, 1823, 1900, 2087, 2222, 2601
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 5 cut(s) 5, 403, 1886, 2350, 2664
FspBI CTAG 8 cut(s) 57, 111, 899, 1098, 1247, 1622, 1919, 2052
GlaI GCGC 2 cut(s) 2353, 2409
GluI GCNGC 5 cut(s) 5, 403, 1886, 2350, 2664
HaeII RGCGCY 1 cut(s) 2411
HaeIII GGCC 5 cut(s) 125, 245, 989, 1343, 2110
HapII CCGG 2 cut(s) 246, 2131
HhaI GCGC 2 cut(s) 2354, 2410
Hin1II CATG 8 cut(s) 122, 500, 1363, 1682, 1700, 2428, 2443, 2463
Hin6I GCGC 2 cut(s) 2352, 2408
HinP1I GCGC 2 cut(s) 2352, 2408
HincII GTYRAC 3 cut(s) 154, 447, 1727
HindII GTYRAC 3 cut(s) 154, 447, 1727
HindIII AAGCTT 1 cut(s) 1409
HpaI GTTAAC 1 cut(s) 447
HpaII CCGG 2 cut(s) 246, 2131
HphI GGTGA 7 cut(s) 59, 467, 1209, 1770, 1954, 2040, 2348
Hpy166II GTNNAC 9 cut(s) 154, 355, 447, 490, 1400, 1685, 1727, 2128, 2552
Hpy188I TCNGA 9 cut(s) 82, 160, 286, 547, 964, 1789, 1995, 2648, 2728
Hpy8I GTNNAC 9 cut(s) 154, 355, 447, 490, 1400, 1685, 1727, 2128, 2552
Hpy99I CGWCG 1 cut(s) 1674
HpyAV CCTTC 7 cut(s) 512, 1101, 1963, 2110, 2116, 2353, 2518
HpyCH4III ACNGT 4 cut(s) 277, 1528, 1848, 2231
HpyCH4IV ACGT 5 cut(s) 832, 1003, 1353, 1669, 2001
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 1252, 1397, 1417, 2107
HpyF3I CTNAG 9 cut(s) 33, 157, 546, 937, 1407, 1568, 1611, 1827, 2140
HpySE526I ACGT 5 cut(s) 832, 1003, 1353, 1669, 2001
Hsp92II CATG 8 cut(s) 122, 500, 1363, 1682, 1700, 2428, 2443, 2463
HspAI GCGC 2 cut(s) 2352, 2408
KspAI GTTAAC 1 cut(s) 447
Kzo9I GATC 4 cut(s) 281, 1789, 2522, 2643
LmnI GCTCC 1 cut(s) 1547
Lsp1109I GCAGC 5 cut(s) 16, 414, 1872, 2361, 2650
MaeI CTAG 8 cut(s) 57, 111, 899, 1098, 1247, 1622, 1919, 2052
MaeII ACGT 5 cut(s) 832, 1003, 1353, 1669, 2001
MalI GATC 4 cut(s) 283, 1791, 2524, 2645
MbiI CCGCTC 3 cut(s) 1738, 2243, 2724
MboI GATC 4 cut(s) 281, 1789, 2522, 2643
MfeI CAATTG 2 cut(s) 1632, 1964
MhlI GDGCHC 6 cut(s) 238, 492, 525, 808, 1402, 1696
MlyI GAGTC 6 cut(s) 23, 97, 518, 1172, 1441, 2642
MmeI TCCRAC 3 cut(s) 866, 993, 1812
Mph1103I ATGCAT 2 cut(s) 1365, 2426
MroXI GAANNNNTTC 1 cut(s) 1319
MslI CAYNNNNRTG 7 cut(s) 325, 495, 528, 851, 2334, 2429, 2671
MspCI CTTAAG 1 cut(s) 1412
MspI CCGG 2 cut(s) 246, 2131
MspR9I CCNGG 4 cut(s) 247, 1345, 1938, 2610
MunI CAATTG 2 cut(s) 1632, 1964
MvaI CCWGG 3 cut(s) 1345, 1938, 2610
MwoI GCNNNNNNNGC 5 cut(s) 242, 1252, 1397, 1417, 2107
NciI CCSGG 1 cut(s) 247
NcoI CCATGG 1 cut(s) 1678
NdeI CATATG 3 cut(s) 529, 1104, 1773
NdeII GATC 4 cut(s) 281, 1789, 2522, 2643
NheI GCTAGC 2 cut(s) 1246, 1621
NlaIII CATG 8 cut(s) 122, 500, 1363, 1682, 1700, 2428, 2443, 2463
NmuCI GTSAC 7 cut(s) 271, 913, 1042, 1215, 1776, 2056, 2366
NsiI ATGCAT 2 cut(s) 1365, 2426
OliI CACNNNNGTG 1 cut(s) 2671
PaeR7I CTCGAG 1 cut(s) 138
PagI TCATGA 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 1319
PfeI GAWTC 8 cut(s) 95, 218, 629, 959, 1315, 1742, 2165, 2579
PflFI GACNNNGTC 1 cut(s) 2201
PkrI GCNGC 5 cut(s) 6, 404, 1887, 2351, 2665
PleI GAGTC 6 cut(s) 23, 97, 517, 1171, 1440, 2641
PpsI GAGTC 6 cut(s) 23, 97, 517, 1171, 1440, 2641
Ppu21I YACGTR 2 cut(s) 833, 1004
PshAI GACNNNNGTC 1 cut(s) 2442
PshBI ATTAAT 1 cut(s) 1797
Psp6I CCWGG 3 cut(s) 1343, 1936, 2608
PspGI CCWGG 3 cut(s) 1343, 1936, 2608
PspPI GGNCC 3 cut(s) 987, 1327, 2108
PspXI VCTCGAGB 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 2201
RsaI GTAC 9 cut(s) 115, 279, 591, 1533, 1850, 1911, 2068, 2475, 2622
RsaNI GTAC 9 cut(s) 114, 278, 590, 1532, 1849, 1910, 2067, 2474, 2621
RseI CAYNNNNRTG 7 cut(s) 325, 495, 528, 851, 2334, 2429, 2671
SatI GCNGC 5 cut(s) 5, 403, 1886, 2350, 2664
Sau3AI GATC 4 cut(s) 281, 1789, 2522, 2643
Sau96I GGNCC 3 cut(s) 987, 1327, 2108
ScaI AGTACT 2 cut(s) 115, 1850
SchI GAGTC 6 cut(s) 23, 97, 518, 1172, 1441, 2642
ScrFI CCNGG 4 cut(s) 247, 1345, 1938, 2610
SduI GDGCHC 6 cut(s) 238, 492, 525, 808, 1402, 1696
SfcI CTRYAG 1 cut(s) 1256
Sfr274I CTCGAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 1327
SlaI CTCGAG 1 cut(s) 138
SmiMI CAYNNNNRTG 7 cut(s) 325, 495, 528, 851, 2334, 2429, 2671
SmlI CTYRAG 4 cut(s) 138, 752, 1412, 1478
SmoI CTYRAG 4 cut(s) 138, 752, 1412, 1478
SsiI CCGC 5 cut(s) 1391, 1736, 1888, 2243, 2722
SspMI CTAG 8 cut(s) 57, 111, 899, 1098, 1247, 1622, 1919, 2052
StyD4I CCNGG 4 cut(s) 245, 1343, 1936, 2608
StyI CCWWGG 2 cut(s) 1167, 1678
TaaI ACNGT 4 cut(s) 277, 1528, 1848, 2231
TaiI ACGT 5 cut(s) 835, 1006, 1356, 1672, 2004
TaqI TCGA 6 cut(s) 61, 139, 1512, 1740, 2163, 2521
TaqII GACCGA 1 cut(s) 1344
TatI WGTACW 3 cut(s) 113, 1848, 2473
TfiI GAWTC 8 cut(s) 95, 218, 629, 959, 1315, 1742, 2165, 2579
TscAI CASTG 3 cut(s) 1257, 1498, 2181
TseFI GTSAC 7 cut(s) 271, 913, 1042, 1215, 1776, 2056, 2366
TseI GCWGC 5 cut(s) 4, 402, 1885, 2349, 2663
Tsp45I GTSAC 7 cut(s) 271, 913, 1042, 1215, 1776, 2056, 2366
TspDTI ATGAA 8 cut(s) 54, 1208, 1640, 1713, 1760, 1833, 2129, 2376
TspRI CASTG 3 cut(s) 1257, 1498, 2181
Tth111I GACNNNGTC 1 cut(s) 2201
Vha464I CTTAAG 1 cut(s) 1412
VneI GTGCAC 2 cut(s) 488, 1398
VpaK11BI GGWCC 1 cut(s) 1327
VspI ATTAAT 1 cut(s) 1797
XagI CCTNNNNNAGG 1 cut(s) 777
XapI RAATTY 6 cut(s) 185, 344, 1265, 1441, 1556, 1820
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XhoI CTCGAG 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 2551
XmnI GAANNNNTTC 1 cut(s) 1319
XspI CTAG 8 cut(s) 57, 111, 899, 1098, 1247, 1622, 1919, 2052
ZrmI AGTACT 2 cut(s) 115, 1850
Zsp2I ATGCAT 2 cut(s) 1365, 2426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.