Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000143

Physical Location & Seq

Genomic Coordinates Forward (+)

4266777 .. 4267768

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1033100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCAAACAAAAGATCAAAACAATATAATGGAAAGTTGAAACATGGTGCACAAAAGCAAGTTGACGCCAAGTGTGTTGCTGCGCTTCTAGCATCAAAGGAAGCACAAGAGGAAATTTTAAGTTATGAGCGGATGAAAAACGACTCTGCCACTCATCTTGAATCTCTCTACAACGAGATACGACCTGCCATTGAAGAACATGAAAGGGACAGCCAAGACAGCGTAGCTACCAGTGTAGCTGAGAAGTGGATAGAAGCCTGCTGCATGAAACTCAAGGCGGAGTTCGACCTTTATTCTTCCATTGTCAAAAGCATTGCCTGCACTCCGCGAAGGCCATTTGGCCAGGCCGAACCTTCTGACGGCAGCACCGAGAATGAGATTAAGTACTTGCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

5.95

Isoelectric Point (pI)

71.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca	FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica	MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica	Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis	pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis	RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata	RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora	Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa	Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha	Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana	Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccBSI	CCGCTC	1 cut(s)	130
AccII	CGCG	1 cut(s)	328
AciI	CCGC	3 cut(s)	130, 278, 326
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	40, 161, 194
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	2 cut(s)	227, 239
AluI	AGCT	2 cut(s)	227, 239
Alw21I	GWGCWC	1 cut(s)	52
Alw44I	GTGCAC	1 cut(s)	48
AoxI	GGCC	3 cut(s)	332, 340, 345
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	80, 261, 363
ApoI	RAATTY	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	67, 248, 375
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	3 cut(s)	81, 262, 364
BlsI	GCNGC	3 cut(s)	82, 263, 365
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	67, 248, 375
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	334, 342, 347
BsiHKAI	GWGCWC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	334, 342, 347
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	3 cut(s)	130, 278, 326
BspANI	GGCC	3 cut(s)	334, 342, 347
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	259, 319
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 219, 318
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	67, 248, 375
BsuRI	GGCC	3 cut(s)	334, 342, 347
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	259, 319
CfoI	GCGC	1 cut(s)	85
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	3 cut(s)	44, 200, 265
CviJI	RGCY	7 cut(s)	213, 227, 239, 257, 334, 342, 347
CviKI_1	RGCY	7 cut(s)	213, 227, 239, 257, 334, 342, 347
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	47, 203, 268
FaiI	YATR	5 cut(s)	27, 45, 126, 201, 266
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	43, 199, 264
Fnu4HI	GCNGC	3 cut(s)	81, 262, 364
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	81, 262, 364
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	3 cut(s)	81, 262, 364
HaeIII	GGCC	3 cut(s)	334, 342, 347
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	47, 203, 268
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	143, 161
Hpy166II	GTNNAC	2 cut(s)	50, 64
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	50, 64
HpyAV	CCTTC	2 cut(s)	324, 363
HpyCH4V	TGCA	4 cut(s)	50, 264, 321, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 219, 318
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	47, 203, 268
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	6 cut(s)	198, 244, 271, 329, 331, 356
Lsp1109I	GCAGC	3 cut(s)	67, 248, 375
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	89
MalI	GATC	1 cut(s)	16
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	206, 288
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	2 cut(s)	114, 394
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	2 cut(s)	119, 381
Msp20I	TGGCCA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	89, 219, 318
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	47, 203, 268
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	82, 263, 365
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	119, 381
SatI	GCNGC	3 cut(s)	81, 262, 364
Sau3AI	GATC	1 cut(s)	14
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	5 cut(s)	187, 229, 241, 291, 355
SfaNI	GCATC	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	114, 394
SsiI	CCGC	3 cut(s)	130, 278, 326
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	342
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	114, 394
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	119, 381
Tru9I	TTAA	2 cut(s)	119, 381
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	3 cut(s)	80, 261, 363
TspDTI	ATGAA	3 cut(s)	149, 216, 281
TspRI	CASTG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	114
XspI	CTAG	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.