RLG00000028803

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
28242187 .. 28245737
3551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028803

Sequence Viewer

Length: 723 bp
ATGCATGCCATTGAATGCATGCCATTGAATGCAAGCGACCCAGACAATAACTCACTTTCACCTGCAGTTTATGAAGTTGGTCAAGATGTTCCCCATGGTCCTATTGTTCCTGTTCATCCTACTGCAGAAAATAAAAAATCAAAAGATGTTCTGAATAAAATTCAGAGCCCAAAAGATTCTACATTTGCACTTACAACCAAATATAATTGCCAATTCCGAGTTGGGATTCAACCATATATTATTGGCACATATGATGTTGAATCTCATGGCAATTGTGGTTATAGAGCTGTGGCCTCGGCAATGGGATTTGGTCGAAAATCTTGGCGTCGAGTTCGTAGGGATTTATTGAACGAGTTAGATAGTATGCCACAATTGTATGAAAGTCTCTTTGGTACTAAAGAGGTTAAGAAGGTTAAGGATGCACTAAACCATTATAGCTCTGGGAGCGCACCTAAAAGATGTTGGATGTATTTCCCAGAAATAGGGCATTTGATTGCAACTTGTTATGGTGTGGTGGTGATCGATTTATCAGATGGGCAATGCATAACATTTCTTCCTCTTGTGGAACACCATACTGGACGTTTCAGTAGCAATGAGCTTCAAGAGATTGGAATTGGTCATGTGAATAGCAATCACTTCGTACATGCAAAAGTACATAAATATCTCACACAGCTTTACAAAAGAAATGCAGCACCATCAAGAGACTCACCACTAGCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

241

Amino Acids

26.8

Weight (kDa)

8.46

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 3 cut(s) 394, 642, 654
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 6 cut(s) 14, 28, 230, 260, 349, 602
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 5 cut(s) 287, 438, 598, 673, 716
AluI AGCT 5 cut(s) 287, 438, 598, 673, 716
Alw26I GTCTC 2 cut(s) 389, 696
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 689
ApoI RAATTY 1 cut(s) 159
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 51, 529, 699
AvaII GGWCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 701
BccI CCATC 2 cut(s) 527, 703
BcgI CGANNNNNNTGC 2 cut(s) 619, 653
BcoDI GTCTC 2 cut(s) 389, 696
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 2 cut(s) 63, 123
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 691
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmsI GCATC 1 cut(s) 409
Bsa29I ATCGAT 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 94, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 580
Bse3DI GCAATG 3 cut(s) 306, 545, 598
BseCI ATCGAT 1 cut(s) 522
BseDI CCNNGG 2 cut(s) 94, 294
BseGI GGATG 3 cut(s) 115, 424, 471
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 3 cut(s) 306, 545, 598
BseNI ACTGG 1 cut(s) 580
BseXI GCAGC 1 cut(s) 701
BshFI GGCC 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 522
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 389, 696
BsmI GAATGC 2 cut(s) 20, 34
BsnI GGCC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 519
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 1 cut(s) 293
BspDI ATCGAT 1 cut(s) 522
BspMAI CTGCAG 2 cut(s) 67, 127
BspMI ACCTGC 1 cut(s) 70
BsrDI GCAATG 3 cut(s) 306, 545, 598
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 94, 294
BssMI GATC 1 cut(s) 519
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 325
BstC8I GCNNGC 3 cut(s) 6, 20, 34
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 3 cut(s) 115, 424, 471
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 1 cut(s) 522
BstMAI GTCTC 2 cut(s) 389, 696
BstMBI GATC 1 cut(s) 519
BstMWI GCNNNNNNNGC 1 cut(s) 444
BstNSI RCATGY 3 cut(s) 8, 22, 647
BstSFI CTRYAG 2 cut(s) 63, 123
BstV1I GCAGC 1 cut(s) 701
Bsu15I ATCGAT 1 cut(s) 522
BsuRI GGCC 1 cut(s) 293
BsuTUI ATCGAT 1 cut(s) 522
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 3 cut(s) 115, 424, 471
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 6, 20, 34
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 522
CseI GACGC 1 cut(s) 314
Csp6I GTAC 3 cut(s) 393, 641, 653
CviAII CATG 6 cut(s) 5, 19, 95, 266, 620, 644
CviJI RGCY 7 cut(s) 168, 287, 293, 438, 598, 673, 716
CviKI_1 RGCY 7 cut(s) 168, 287, 293, 438, 598, 673, 716
CviQI GTAC 3 cut(s) 393, 641, 653
DpnI GATC 1 cut(s) 521
DpnII GATC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 94
EcoT22I ATGCAT 3 cut(s) 6, 20, 545
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 6 cut(s) 8, 22, 98, 269, 623, 647
FatI CATG 6 cut(s) 4, 18, 94, 265, 619, 643
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 690
FokI GGATG 3 cut(s) 102, 431, 478
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 690
FspBI CTAG 1 cut(s) 713
GlaI GCGC 1 cut(s) 448
GluI GCNGC 1 cut(s) 690
HaeIII GGCC 1 cut(s) 293
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 6 cut(s) 8, 22, 98, 269, 623, 647
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HinfI GANTC 4 cut(s) 176, 226, 260, 704
HphI GGTGA 3 cut(s) 51, 529, 699
Hpy188I TCNGA 4 cut(s) 153, 165, 218, 532
Hpy188III TCNNGA 3 cut(s) 83, 602, 699
Hpy99I CGWCG 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 580
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 6 cut(s) 8, 22, 98, 269, 623, 647
HspAI GCGC 1 cut(s) 447
Kzo9I GATC 1 cut(s) 519
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 6 cut(s) 54, 75, 123, 426, 489, 561
Lsp1109I GCAGC 1 cut(s) 701
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 713
MaeII ACGT 1 cut(s) 580
MalI GATC 1 cut(s) 521
MboI GATC 1 cut(s) 519
MboII GAAGA 1 cut(s) 545
MfeI CAATTG 2 cut(s) 271, 371
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 6 cut(s) 159, 205, 212, 271, 371, 612
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 3 cut(s) 304, 394, 567
Mph1103I ATGCAT 3 cut(s) 6, 20, 545
MseI TTAA 2 cut(s) 405, 414
MunI CAATTG 2 cut(s) 271, 371
Mva1269I GAATGC 2 cut(s) 20, 34
MwoI GCNNNNNNNGC 1 cut(s) 444
NcoI CCATGG 1 cut(s) 94
NdeI CATATG 1 cut(s) 250
NdeII GATC 1 cut(s) 519
NlaIII CATG 6 cut(s) 8, 22, 98, 269, 623, 647
NmeAIII GCCGAG 1 cut(s) 275
NsiI ATGCAT 3 cut(s) 6, 20, 545
NspI RCATGY 3 cut(s) 8, 22, 647
PaeI GCATGC 2 cut(s) 8, 22
PaqCI CACCTGC 1 cut(s) 70
PctI GAATGC 2 cut(s) 20, 34
PfeI GAWTC 3 cut(s) 176, 226, 260
PkrI GCNGC 1 cut(s) 691
PleI GAGTC 1 cut(s) 698
PpsI GAGTC 1 cut(s) 698
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 2 cut(s) 67, 127
RsaI GTAC 3 cut(s) 394, 642, 654
RsaNI GTAC 3 cut(s) 393, 641, 653
SaqAI TTAA 2 cut(s) 405, 414
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 1 cut(s) 519
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 698
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 2 cut(s) 63, 123
SinI GGWCC 1 cut(s) 98
SphI GCATGC 2 cut(s) 8, 22
Sse9I AATT 6 cut(s) 159, 205, 212, 271, 371, 612
SspMI CTAG 1 cut(s) 713
StyI CCWWGG 1 cut(s) 94
TaiI ACGT 1 cut(s) 583
TaqI TCGA 3 cut(s) 313, 328, 522
TasI AATT 6 cut(s) 159, 205, 212, 271, 371, 612
TatI WGTACW 1 cut(s) 652
TfiI GAWTC 3 cut(s) 176, 226, 260
Tru1I TTAA 2 cut(s) 405, 414
Tru9I TTAA 2 cut(s) 405, 414
TseI GCWGC 1 cut(s) 689
TspDTI ATGAA 3 cut(s) 87, 104, 393
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 159
XceI RCATGY 3 cut(s) 8, 22, 647
XcmI CCANNNNNNNNNTGG 2 cut(s) 218, 437
XspI CTAG 1 cut(s) 713
Zsp2I ATGCAT 3 cut(s) 6, 20, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.