Rw6G006390

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000143
Physical Location & Seq
Reverse (-)
10143438 .. 10144819
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006390.1

Sequence Viewer

Length: 1164 bp
ATGGAATATAGGGTTGATGCAGCTGGAGTTAATGTTGTATCATGTGGTTGTGTCATTCGCCGCATGCACCAATTACCATGTGCACATGAGATTGTTGAATATCGAAATTCCCATAAGCCTATCCCAATTGATGCTGTCCATTCTCATTGGAGACGATTAAGTGTAGGTAATTTTGTGGAGAAAATTGATTCCCAAGAAAAAGTTATGGTAAGACCATATGACGAAACCAAGAGACAAGTTTTGCTGAAGATTGATGAGCTTATAAATCCAAGTTGCACAATGATTCAAGAACCAAATAAGAAGATTAAAACCAAAGGGCGTCCTTCTAAGATTGACAATAGTACTTGCCGTCCACCATCTGTTTTTGAGATTACTGAGTCTTTTTCCGCACATGGTAGTCAGTCACAAGTACCACTTGAAAAGGTTGTTAATGCATCTCCTTGTACTGTATTGCCTTCTAAGAAATCGGATAAGCATCCAGAGAAAAATAAAGTCACTTCACCATTTGATCTAACACAAAAATATACGGCGCAATTCTTTTTTGGTATGAGGCCTTACATTCTATGTTCATTTGATGTTGAGTCTGATGGTAATTGTGGTTATAGAGTTGTAGCTTCGACTATGGAATTTGGAGGGCGTTTTTGGCGAAGGGTTCGAATAGACCTAATGAATGAGCTAAAAAGTATGCCCCACTTGTACATGCAACTATATGGTAGCGAAGGCAGTGTAGAGAATATCAAACAGAGACTAAACCATTTTGGATCTGCTGCACCACGTAGAAAATGGATGTGTATAACAGAAATGTGGCATTTGATTGCTACTTGTTATGGAGTTGTTGTGATAAACTTATCTAATAAACAGTGCCTTACCTTCCTTCCTTTGACAGAACATATTACTGGGCAATTTCTAAACCACAAACTGCCTGAAATTGGAATTGGTTTTGTTAACGGAGACCACTTTGTGCAGGTAATGTGTTTGTTAGCGAGATGCCCATTACCACCACTCCCACCAAATTGGTACCCCCATGCTGATGATAAAGCAAGATCATTATACAATAGATACAAGGATCATCTGCATCAATATAACCAAATACCCCATCCAGAAAGAAGTACTGCTATTTCTGAAATTATAACTCTTGAGACTGATGAGACTATGTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

387

Amino Acids

44.46

Weight (kDa)

8.59

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 263, 1130
Acc36I ACCTGC 1 cut(s) 955
Acc65I GGTACC 1 cut(s) 1017
AccB1I GGYRCC 1 cut(s) 1017
AciI CCGC 2 cut(s) 61, 387
AclWI GGATC 2 cut(s) 769, 1074
AcsI RAATTY 2 cut(s) 106, 626
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 319
AdeI CACNNNGTG 1 cut(s) 961
AfaI GTAC 6 cut(s) 343, 411, 445, 698, 1019, 1111
AfiI CCNNNNNNNGG 1 cut(s) 929
AgsI TTSAA 4 cut(s) 98, 287, 419, 1160
AjuI GAANNNNNNNTTGG 2 cut(s) 918, 950
AluBI AGCT 4 cut(s) 23, 259, 614, 676
AluI AGCT 4 cut(s) 23, 259, 614, 676
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 6 cut(s) 145, 226, 739, 945, 1133, 1142
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 2 cut(s) 769, 1074
AoxI GGCC 1 cut(s) 551
ApaLI GTGCAC 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 20, 767
ApoI RAATTY 2 cut(s) 106, 626
Asp718I GGTACC 1 cut(s) 1017
AspLEI GCGC 1 cut(s) 532
AsuHPI GGTGA 1 cut(s) 492
AsuII TTCGAA 1 cut(s) 655
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 1017
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 32, 754
BccI CCATC 3 cut(s) 364, 581, 1104
BceAI ACGGC 2 cut(s) 333, 543
BcoDI GTCTC 6 cut(s) 145, 226, 739, 945, 1133, 1142
BfuAI ACCTGC 1 cut(s) 955
BisI GCNGC 3 cut(s) 21, 61, 768
BlsI GCNGC 3 cut(s) 22, 62, 769
BmcAI AGTACT 2 cut(s) 343, 1111
BmiI GGNNCC 1 cut(s) 1019
BmrI ACTGGG 1 cut(s) 906
BmsI GCATC 6 cut(s) 7, 121, 443, 484, 977, 1084
BmuI ACTGGG 1 cut(s) 906
BpmI CTGGAG 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 655
BpuEI CTTGAG 1 cut(s) 1157
BsaAI YACGTR 1 cut(s) 776
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 945
BsaXI ACNNNNNCTCC 6 cut(s) 18, 48, 822, 852, 987, 1017
Bsc4I CCNNNNNNNGG 1 cut(s) 929
Bse1I ACTGG 1 cut(s) 901
Bse8I GATNNNNATC 1 cut(s) 474
BseGI GGATG 3 cut(s) 475, 792, 1096
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 929
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 901
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 32, 754
BsgI GTGCAG 2 cut(s) 753, 983
BshFI GGCC 1 cut(s) 553
BshNI GGYRCC 1 cut(s) 1017
BsiHKAI GWGCWC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 929
BsmAI GTCTC 6 cut(s) 145, 226, 739, 945, 1133, 1142
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 553
Bso31I GGTCTC 1 cut(s) 945
Bsp119I TTCGAA 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 4 cut(s) 508, 761, 1043, 1066
BspACI CCGC 2 cut(s) 61, 387
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 1019
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 2 cut(s) 769, 1074
BspT104I TTCGAA 1 cut(s) 655
BspT107I GGYRCC 1 cut(s) 1017
BspTNI GGTCTC 1 cut(s) 945
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 1 cut(s) 901
BssMI GATC 4 cut(s) 508, 761, 1043, 1066
BssNI GRCGYC 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 448, 861
BstACI GRCGYC 1 cut(s) 319
BstAUI TGTACA 1 cut(s) 696
BstBAI YACGTR 1 cut(s) 776
BstBI TTCGAA 1 cut(s) 655
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 3 cut(s) 327, 375, 459
BstF5I GGATG 3 cut(s) 475, 792, 1096
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 4 cut(s) 511, 764, 1046, 1069
BstMAI GTCTC 6 cut(s) 145, 226, 739, 945, 1133, 1142
BstMBI GATC 4 cut(s) 508, 761, 1043, 1066
BstMWI GCNNNNNNNGC 1 cut(s) 643
BstNSI RCATGY 2 cut(s) 67, 703
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 32, 754
BstX2I RGATCY 1 cut(s) 761
BstXI CCANNNNNNTGG 1 cut(s) 1014
BstYI RGATCY 1 cut(s) 761
BsuRI GGCC 1 cut(s) 553
BtsCI GGATG 3 cut(s) 475, 792, 1096
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 2 cut(s) 730, 866
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 1 cut(s) 532
CseI GACGC 1 cut(s) 308
Csp6I GTAC 6 cut(s) 342, 410, 444, 697, 1018, 1110
CviAII CATG 7 cut(s) 42, 64, 78, 86, 392, 700, 1025
CviJI RGCY 6 cut(s) 23, 118, 259, 553, 614, 676
CviKI_1 RGCY 6 cut(s) 23, 118, 259, 553, 614, 676
CviQI GTAC 6 cut(s) 342, 410, 444, 697, 1018, 1110
DdeI CTNAG 3 cut(s) 327, 375, 459
DpnI GATC 4 cut(s) 510, 763, 1045, 1068
DpnII GATC 4 cut(s) 508, 761, 1043, 1066
DraIII CACNNNGTG 1 cut(s) 961
Eco147I AGGCCT 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 945
Eco57I CTGAAG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 7 cut(s) 45, 67, 81, 89, 395, 703, 1028
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 7 cut(s) 41, 63, 77, 85, 391, 699, 1024
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 21, 61, 768
FokI GGATG 3 cut(s) 462, 799, 1083
Fsp4HI GCNGC 3 cut(s) 21, 61, 768
GlaI GCGC 1 cut(s) 531
GluI GCNGC 3 cut(s) 21, 61, 768
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 553
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 532
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 7 cut(s) 45, 67, 81, 89, 395, 703, 1028
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HinfI GANTC 4 cut(s) 188, 283, 377, 581
HpaI GTTAAC 1 cut(s) 946
HphI GGTGA 1 cut(s) 492
Hpy166II GTNNAC 3 cut(s) 83, 353, 946
Hpy188I TCNGA 3 cut(s) 469, 586, 1123
Hpy188III TCNNGA 4 cut(s) 287, 479, 1100, 1136
Hpy8I GTNNAC 3 cut(s) 83, 353, 946
HpyAV CCTTC 6 cut(s) 333, 465, 642, 713, 880, 884
HpyCH4III ACNGT 2 cut(s) 448, 861
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 9 cut(s) 20, 67, 83, 276, 434, 703, 770, 964, 1075
HpyF10VI GCNNNNNNNGC 1 cut(s) 643
HpyF3I CTNAG 3 cut(s) 327, 375, 459
HpySE526I ACGT 1 cut(s) 775
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 7 cut(s) 45, 67, 81, 89, 395, 703, 1028
HspAI GCGC 1 cut(s) 530
KpnI GGTACC 1 cut(s) 1021
KspAI GTTAAC 1 cut(s) 946
Kzo9I GATC 4 cut(s) 508, 761, 1043, 1066
LpnPI CCDG 6 cut(s) 9, 492, 882, 936, 950, 1113
Lsp1109I GCAGC 2 cut(s) 32, 754
LweI GCATC 6 cut(s) 7, 121, 443, 484, 977, 1084
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 2 cut(s) 402, 493
MalI GATC 4 cut(s) 510, 763, 1045, 1068
MboI GATC 4 cut(s) 508, 761, 1043, 1066
MboII GAAGA 2 cut(s) 259, 313
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 1 cut(s) 85
MlyI GAGTC 2 cut(s) 386, 590
MnlI CCTC 2 cut(s) 543, 626
Mph1103I ATGCAT 1 cut(s) 436
MseI TTAA 5 cut(s) 30, 158, 306, 429, 945
MslI CAYNNNNRTG 1 cut(s) 1029
MspA1I CMGCKG 1 cut(s) 23
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 643
NdeI CATATG 1 cut(s) 217
NdeII GATC 4 cut(s) 508, 761, 1043, 1066
NlaIII CATG 7 cut(s) 45, 67, 81, 89, 395, 703, 1028
NlaIV GGNNCC 1 cut(s) 1019
NmuCI GTSAC 2 cut(s) 402, 493
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 2 cut(s) 67, 703
NspV TTCGAA 1 cut(s) 655
PaeI GCATGC 1 cut(s) 67
PceI AGGCCT 1 cut(s) 553
PfeI GAWTC 2 cut(s) 188, 283
PkrI GCNGC 3 cut(s) 22, 62, 769
PleI GAGTC 2 cut(s) 385, 589
PpsI GAGTC 2 cut(s) 385, 589
Ppu21I YACGTR 1 cut(s) 776
PsiI TTATAA 2 cut(s) 263, 1130
PspN4I GGNNCC 1 cut(s) 1019
PsuI RGATCY 1 cut(s) 761
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 6 cut(s) 343, 411, 445, 698, 1019, 1111
RsaNI GTAC 6 cut(s) 342, 410, 444, 697, 1018, 1110
RseI CAYNNNNRTG 1 cut(s) 1029
SaqAI TTAA 5 cut(s) 30, 158, 306, 429, 945
SatI GCNGC 3 cut(s) 21, 61, 768
Sau3AI GATC 4 cut(s) 508, 761, 1043, 1066
ScaI AGTACT 2 cut(s) 343, 1111
SchI GAGTC 2 cut(s) 386, 590
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 6 cut(s) 7, 121, 443, 484, 977, 1084
SfuI TTCGAA 1 cut(s) 655
SmiMI CAYNNNNRTG 1 cut(s) 1029
SmlI CTYRAG 1 cut(s) 1136
SmoI CTYRAG 1 cut(s) 1136
SphI GCATGC 1 cut(s) 67
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 2 cut(s) 61, 387
StuI AGGCCT 1 cut(s) 553
TaaI ACNGT 2 cut(s) 448, 861
TaiI ACGT 1 cut(s) 778
TaqI TCGA 3 cut(s) 103, 617, 655
TatI WGTACW 4 cut(s) 341, 443, 696, 1109
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 2 cut(s) 188, 283
Tru1I TTAA 5 cut(s) 30, 158, 306, 429, 945
Tru9I TTAA 5 cut(s) 30, 158, 306, 429, 945
TscAI CASTG 2 cut(s) 730, 866
TseFI GTSAC 2 cut(s) 402, 493
TseI GCWGC 2 cut(s) 20, 767
Tsp45I GTSAC 2 cut(s) 402, 493
TspDTI ATGAA 2 cut(s) 558, 683
TspGWI ACGGA 1 cut(s) 963
TspRI CASTG 2 cut(s) 730, 866
VneI GTGCAC 1 cut(s) 81
XapI RAATTY 2 cut(s) 106, 626
XceI RCATGY 2 cut(s) 67, 703
XcmI CCANNNNNNNNNTGG 1 cut(s) 780
ZrmI AGTACT 2 cut(s) 343, 1111
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.