Rmu_sc0000311.1_g000007

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000311.1
OG0000143
Physical Location & Seq
Forward (+)
39052 .. 40968
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000311.1_g000007.1.cds

Sequence Viewer

Length: 615 bp
atgaggccttacattctaggttcatttgatgttgagtctgatggtaattgtggttatagagttgtagtatcggctatgggatttggtaggcatttttggcagagagttcgaacagacctagtgaatgagctaaaaagtatgccccacttgtacatgaaactatatggtagcgaaggcagtgtagagaatatcaaacagagactgaaccattctggatctgctacaccacatagaaaatggatgtgtataatagagatggggcatttgatcgctacttgctatggagttgttgtgataaacttatctgataaacaatgccttaccttccttcctttgacagaacacattactgggctatttcagaaccaagaactgcctgaaattggaattggttttgttaacggagaccactttgtgtgtctttgtcagcaggatgcccattaccaccaatcccaccaaattggaagtgaaaaagtacttaaacggcccgcatccaaagtttataaggaagtcttggagaagtttgcaatgtttaaggctggtgaacattgtgcagttgatgttgtggaaatacccgacgaggctaagaaagtgacgcagtgggaagtaacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

204

Amino Acids

23.17

Weight (kDa)

6.59

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AciI CCGC 1 cut(s) 489
AclWI GGATC 1 cut(s) 223
AdeI CACNNNGTG 1 cut(s) 415
AfaI GTAC 2 cut(s) 152, 477
AfiI CCNNNNNNNGG 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 193, 399
AlwI GGATC 1 cut(s) 223
AlwNI CAGNNNCTG 1 cut(s) 202
AoxI GGCC 2 cut(s) 5, 485
AspS9I GGNCC 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 554
AsuII TTCGAA 1 cut(s) 109
BccI CCATC 2 cut(s) 35, 250
BceAI ACGGC 1 cut(s) 500
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcoDI GTCTC 2 cut(s) 193, 399
BfaI CTAG 3 cut(s) 17, 119, 613
BmcAI AGTACT 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 486
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 424, 500
BmuI ACTGGG 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 534
BseGI GGATG 3 cut(s) 246, 439, 491
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 534
BseNI ACTGG 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 573
BshFI GGCC 2 cut(s) 7, 487
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 193, 399
BsnI GGCC 2 cut(s) 7, 487
Bso31I GGTCTC 1 cut(s) 399
Bsp119I TTCGAA 1 cut(s) 109
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 2 cut(s) 215, 267
BspACI CCGC 1 cut(s) 489
BspANI GGCC 2 cut(s) 7, 487
BspPI GGATC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 1 cut(s) 355
BssMI GATC 2 cut(s) 215, 267
BstAUI TGTACA 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 3 cut(s) 246, 439, 491
BstKTI GATC 2 cut(s) 218, 270
BstMAI GTCTC 2 cut(s) 193, 399
BstMBI GATC 2 cut(s) 215, 267
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 2 cut(s) 7, 487
BtsCI GGATG 3 cut(s) 246, 439, 491
BtsI GCAGTG 2 cut(s) 184, 605
BtsIMutI CAGTG 2 cut(s) 184, 605
Cac8I GCNNGC 1 cut(s) 489
CaiI CAGNNNCTG 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 486
CseI GACGC 1 cut(s) 604
Csp6I GTAC 2 cut(s) 151, 476
CviAII CATG 1 cut(s) 154
CviJI RGCY 7 cut(s) 7, 74, 130, 355, 487, 539, 584
CviKI_1 RGCY 7 cut(s) 7, 74, 130, 355, 487, 539, 584
CviQI GTAC 2 cut(s) 151, 476
DdeI CTNAG 1 cut(s) 585
DpnI GATC 2 cut(s) 217, 269
DpnII GATC 2 cut(s) 215, 267
DraIII CACNNNGTG 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 7
Eco31I GGTCTC 1 cut(s) 399
FaeI CATG 1 cut(s) 157
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 496
FokI GGATG 3 cut(s) 253, 446, 478
FspBI CTAG 3 cut(s) 17, 119, 613
HaeIII GGCC 2 cut(s) 7, 487
HgaI GACGC 1 cut(s) 604
Hin1II CATG 1 cut(s) 157
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 1 cut(s) 35
HpaI GTTAAC 1 cut(s) 400
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 2 cut(s) 400, 545
Hpy188I TCNGA 3 cut(s) 40, 307, 363
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 2 cut(s) 400, 545
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 3 cut(s) 167, 334, 338
HpyCH4V TGCA 2 cut(s) 527, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 585
Hsp92II CATG 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 2 cut(s) 215, 267
LpnPI CCDG 5 cut(s) 198, 336, 390, 416, 525
LweI GCATC 2 cut(s) 424, 500
MaeI CTAG 3 cut(s) 17, 119, 613
MaeIII GTNAC 2 cut(s) 592, 607
MalI GATC 2 cut(s) 217, 269
MboI GATC 2 cut(s) 215, 267
MflI RGATCY 1 cut(s) 215
MluCI AATT 4 cut(s) 46, 381, 387, 459
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 1 cut(s) 574
MseI TTAA 3 cut(s) 399, 480, 534
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 2 cut(s) 215, 267
NlaIII CATG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 592
NspV TTCGAA 1 cut(s) 109
PceI AGGCCT 1 cut(s) 7
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PsiI TTATAA 1 cut(s) 504
PspPI GGNCC 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 2 cut(s) 152, 477
RsaNI GTAC 2 cut(s) 151, 476
SaqAI TTAA 3 cut(s) 399, 480, 534
Sau3AI GATC 2 cut(s) 215, 267
Sau96I GGNCC 1 cut(s) 486
ScaI AGTACT 1 cut(s) 477
SchI GAGTC 1 cut(s) 44
SetI ASST 5 cut(s) 22, 120, 132, 326, 614
SfaNI GCATC 2 cut(s) 424, 500
SfuI TTCGAA 1 cut(s) 109
Sse9I AATT 4 cut(s) 46, 381, 387, 459
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 1 cut(s) 489
SspMI CTAG 3 cut(s) 17, 119, 613
StuI AGGCCT 1 cut(s) 7
TaqI TCGA 1 cut(s) 109
TasI AATT 4 cut(s) 46, 381, 387, 459
TatI WGTACW 2 cut(s) 150, 475
Tru1I TTAA 3 cut(s) 399, 480, 534
Tru9I TTAA 3 cut(s) 399, 480, 534
TscAI CASTG 2 cut(s) 184, 605
TseFI GTSAC 1 cut(s) 592
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 12, 170
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 2 cut(s) 184, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XspI CTAG 3 cut(s) 17, 119, 613
ZrmI AGTACT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.