Rw5G011440

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000143
Physical Location & Seq
Forward (+)
13054868 .. 13057557
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011440.1

Sequence Viewer

Length: 2310 bp
ATGTCTAAGTGTTTAATGAGACCCAAGGATATATTGACTTCCATAAAGAGCCGAGATCCAAGTAATACATCAACGATGAGAACTATATACAATGCTAGGTATTTTGCTCGGATTATCGCTAGAGCAGGCAGAACTCAAATGCAACAATTACTAAAGAATTTGCGCGATCATCATTATATTGAGCATCATAGAAGCGAAGATCACGTGGTCACTGATTTGTTTTGGTGTCATCCATTCAGTCTTCAAATGCTACGTACATTCCCACATGTTCTTATCATGGATTGCACCTATAAGACAAACAGGTATCGTTTTCCACTTTTTGAGATTGTGGGTATTACATGCACTGAGCAAACTTTCAACGTTGCGTTTGTTTACATGTCAAAGGAGGCAGAAGATAATTACAGATGGGCACTGAGTAGGTTAAGAACACTTATGGATGAGGATTCTATGCCTGGGGTAATTGTCACTGATCGAGAATTAGCACTTATGAAAGCCACTGAAAATGTCTTTCCCGATACTCATCAGATTTTATGTAAGTGGCACATTGGTAAGAATGTGATGAGAAAATGCAAAGAAAAATTCACAACAAAAGAAGGGTGGGAAGCATTTAATAATGATTGGCATAGCTTGGTGGATTGTAGCACTGAGGACGAGTATGTACATAGCCTTACAGCTTTTGAATCAAAATACTTTGCATTTCCTGAGGAGATAAATTATTTGAAGACCAATTGGTTGAACAAGTATAAGGAAATGTTCATTGCAGCATGGACAAACAACTACATGCATCTTGGTGCAAAGACTTCGAATCGGGCCGAGAGTGCACATGCAAAGCTCAAGCGAGAACTTAGATCTTCCCAACTTGACTTTAATGTATCATGGGAGCACATCCACTCATTATTGTGTTTACATCATACTGAAGTTAAGGCTTCATTTGAAAAAAGTCGATGTTTTGTGCAACATGAGTTTAAGCATGCATACTTGAGAGAGTTGATAGGATTTGTGTCCATTGCGGCATTGAACAAGATCATCTATGAAGCGAACAAGGCTGATGATATTACATCGGAACTTGCATCATGTAATTGTGCCATACGTAAAACACATGGGTTACCATGTGCGCATGAGATAGCTGAATATAAGCATTGTGACAGTCCCATACCAATTACATCTGTGCATCACCACTGGAGAAAGTTAGAGATCGGGGCAATAGTGGAAGACTCGAAGGTGCACGAAAAGGTTCCTTTAAAAGAACAATTAGAACGATTGGCAGAATGGGCTGAAGAACAAAATGAGGATACAAGACGTCAAATCTTAGTGAAGATTGATGAGCTGATAAATCCGACCTCTACTTTACTTAGGGAGCCTGCTGAAAAGAGAAAGACCAAAGGGCGTCCAAGTAAGGAAGACAGTGGCACTCGTCGTTTGCCATCCGGGTTTGAAATTATAAATACATTGTTGTCTGAGCGTGAGACCCATTCGCCTCTTCCAAGTGTTCAAAAAGTCTCACGTAAGTCAAATATGAAGACAAGTAATGACCACTCAGAGAAAAGTAAGGAAGATAAGCTGGCTCAGAAGGATATGAGGTTTGAGCTAACTCAGAAGTATACAACACAGTTCATATTTGGCATGCGGCCATATATTATCGGTTCGATGGATGTCGAAAATGATGGTAATTGTGGTTTTAGAGTTGTGGCATCGGCTTTGGGATTTGGTAGAAAACATTGGCGTAAAGTGCGAATTGATTTGCTAAATGAGCTAAAAGGCACGCCTGAGCTTTACGAAGCTCTTTATGGAGGACAAAGTGCTGTGGACAAACTTTGTAAACGAATTAACCATTCTGCGTCCAATATTGCACCTAAACGGAAATGGATGGATCTACCAGACATGGGGCATTTGATTGCAACTTGTTATGGAGTAGTGGTTGTCAACTTATCAGATGGTCAGTGCTTCACATTTCTCCCATTACGTGAATACAGCGAGGGAAAACCAATGGAAGCAAATTTACGTGAGATTGGCCTTGGATTTGTGAACAACGATCATTTTGTTCAGATATGTTTATTGCCTGCGCACCCATTGCCACCGGTTACACCAAATTGGATTTACCATGCAGATGATAAAGCTAAAAGTTTGTACTTGAAATATCAAGACCGTTTCCAACAATATGATCAATTGCCACATCCTGAAAGAGTGACTAATATATCCTCAGAAACAGTGCAACTTGACTATGACAATGAACTTACTGATGAAATTGTTCAACTTGGTGATGCCACTATATCTAGCAAAGAAGAAACAATGCATCTTGGCGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

769

Amino Acids

89.22

Weight (kDa)

6.95

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 66 - 175 8.4e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 90 - 185 5.7e-27 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1442
AatII GACGTC 1 cut(s) 1303
Acc16I TGCGCA 2 cut(s) 1116, 2064
AccI GTMKAC 1 cut(s) 1601
AccII CGCG 1 cut(s) 165
AciI CCGC 2 cut(s) 1010, 1627
AclI AACGTT 1 cut(s) 360
AclWI GGATC 2 cut(s) 50, 1878
AcoI YGGCCR 1 cut(s) 1628
AcsI RAATTY 3 cut(s) 157, 578, 1996
AcuI CTGAAG 2 cut(s) 936, 1296
AcvI CACGTG 1 cut(s) 205
AcyI GRCGYC 2 cut(s) 1300, 1387
AfaI GTAC 3 cut(s) 256, 660, 2129
AfiI CCNNNNNNNGG 1 cut(s) 1883
AflIII ACRYGT 2 cut(s) 265, 375
AgeI ACCGGT 1 cut(s) 2077
AjnI CCWGG 1 cut(s) 451
Alw21I GWGCWC 3 cut(s) 823, 885, 1227
Alw26I GTCTC 3 cut(s) 13, 1460, 1504
Alw44I GTGCAC 2 cut(s) 819, 1223
AlwI GGATC 2 cut(s) 50, 1878
AoxI GGCC 3 cut(s) 810, 1628, 2011
ApaLI GTGCAC 2 cut(s) 819, 1223
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 3 cut(s) 157, 578, 1996
AsiGI ACCGGT 1 cut(s) 2077
Asp700I GAANNNNTTC 2 cut(s) 1233, 2247
AspLEI GCGC 3 cut(s) 165, 1117, 2065
AspS9I GGNCC 1 cut(s) 810
AsuC2I CCSGG 1 cut(s) 1429
AsuHPI GGTGA 2 cut(s) 1166, 2270
AsuII TTCGAA 1 cut(s) 803
AxyI CCTNAGG 1 cut(s) 702
BaeGI GKGCMC 3 cut(s) 412, 823, 1227
BarI GAAGNNNNNNTAC 2 cut(s) 1983, 2015
BbrPI CACGTG 1 cut(s) 205
BbsI GAAGAC 5 cut(s) 233, 728, 1218, 1407, 1526
Bbv12I GWGCWC 3 cut(s) 823, 885, 1227
BbvI GCAGC 1 cut(s) 773
BccI CCATC 6 cut(s) 399, 1432, 1642, 1658, 1861, 1928
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BciT130I CCWGG 1 cut(s) 453
BciVI GTATCC 1 cut(s) 1285
BclI TGATCA 1 cut(s) 2161
BcnI CCSGG 1 cut(s) 1429
BcoDI GTCTC 3 cut(s) 13, 1460, 1504
BfaI CTAG 3 cut(s) 96, 120, 2274
BfuI GTATCC 1 cut(s) 1285
BglII AGATCT 1 cut(s) 848
BisI GCNGC 3 cut(s) 762, 1011, 1628
BlsI GCNGC 3 cut(s) 763, 1012, 1629
Bme1390I CCNGG 2 cut(s) 453, 1429
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 2 cut(s) 1236, 1359
BmrFI CCNGG 2 cut(s) 453, 1429
BmsI GCATC 7 cut(s) 193, 793, 1079, 1180, 1700, 2251, 2302
BpiI GAAGAC 5 cut(s) 233, 728, 1218, 1407, 1526
BpmI CTGGAG 1 cut(s) 1201
Bpu10I CCTNAGC 1 cut(s) 1767
Bpu14I TTCGAA 1 cut(s) 803
BpuEI CTTGAG 2 cut(s) 818, 1000
BpuMI CCSGG 1 cut(s) 1429
BsaAI YACGTR 6 cut(s) 205, 254, 1091, 1505, 1964, 2003
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 2 cut(s) 1300, 1387
BsaI GGTCTC 2 cut(s) 13, 1460
BsaJI CCNNGG 3 cut(s) 24, 452, 2014
BsaWI WCCGGW 1 cut(s) 2077
BsaXI ACNNNNNCTCC 2 cut(s) 1902, 1932
Bsc4I CCNNNNNNNGG 1 cut(s) 1883
Bse118I RCCGGY 1 cut(s) 2077
Bse1I ACTGG 1 cut(s) 1184
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 3 cut(s) 756, 1005, 2069
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 3 cut(s) 24, 452, 2014
BseGI GGATG 7 cut(s) 229, 442, 885, 1424, 1657, 1872, 2173
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 1883
BseMI GCAATG 3 cut(s) 756, 1005, 2069
BseNI ACTGG 1 cut(s) 1184
BseRI GAGGAG 1 cut(s) 719
BseSI GKGCMC 3 cut(s) 412, 823, 1227
BseXI GCAGC 1 cut(s) 773
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 812, 1630, 2013
BshTI ACCGGT 1 cut(s) 2077
BsiHKAI GWGCWC 3 cut(s) 823, 885, 1227
BsiSI CCGG 2 cut(s) 1428, 2078
BslFI GGGAC 1 cut(s) 1134
BslI CCNNNNNNNGG 1 cut(s) 1883
BsmAI GTCTC 3 cut(s) 13, 1460, 1504
BsmFI GGGAC 1 cut(s) 1134
BsnI GGCC 3 cut(s) 812, 1630, 2013
Bso31I GGTCTC 2 cut(s) 13, 1460
Bsp119I TTCGAA 1 cut(s) 803
Bsp1286I GDGCHC 4 cut(s) 412, 823, 885, 1227
Bsp1407I TGTACA 1 cut(s) 658
BspACI CCGC 2 cut(s) 1010, 1627
BspANI GGCC 3 cut(s) 812, 1630, 2013
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 1236, 1359
BspPI GGATC 2 cut(s) 50, 1878
BspT104I TTCGAA 1 cut(s) 803
BspTNI GGTCTC 2 cut(s) 13, 1460
BsrDI GCAATG 3 cut(s) 756, 1005, 2069
BsrFI RCCGGY 1 cut(s) 2077
BsrGI TGTACA 1 cut(s) 658
BsrI ACTGG 1 cut(s) 1184
BssAI RCCGGY 1 cut(s) 2077
BssECI CCNNGG 3 cut(s) 24, 452, 2014
BssNAI GTATAC 1 cut(s) 1602
BssNI GRCGYC 2 cut(s) 1300, 1387
BssT1I CCWWGG 2 cut(s) 24, 2014
Bst1107I GTATAC 1 cut(s) 1602
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 5 cut(s) 1148, 1406, 1611, 2147, 2209
Bst6I CTCTTC 1 cut(s) 1485
BstACI GRCGYC 2 cut(s) 1300, 1387
BstAPI GCANNNNNTGC 1 cut(s) 2071
BstAUI TGTACA 1 cut(s) 658
BstBAI YACGTR 6 cut(s) 205, 254, 1091, 1505, 1964, 2003
BstBI TTCGAA 1 cut(s) 803
BstC8I GCNNGC 7 cut(s) 127, 972, 1362, 1563, 1625, 1763, 2061
BstEII GGTNACC 1 cut(s) 1104
BstF5I GGATG 7 cut(s) 229, 442, 885, 1424, 1657, 1872, 2173
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 3 cut(s) 165, 1117, 2065
BstMAI GTCTC 3 cut(s) 13, 1460, 1504
BstMWI GCNNNNNNNGC 6 cut(s) 818, 1043, 1271, 1729, 1750, 2071
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 7 cut(s) 269, 342, 379, 784, 827, 974, 1627
BstPI GGTNACC 1 cut(s) 1104
BstSCI CCNGG 2 cut(s) 451, 1427
BstSLI GKGCMC 3 cut(s) 412, 823, 1227
BstSNI TACGTA 2 cut(s) 254, 1091
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 773
BstV2I GAAGAC 5 cut(s) 233, 728, 1218, 1407, 1526
BstX2I RGATCY 3 cut(s) 55, 848, 1870
BstYI RGATCY 3 cut(s) 55, 848, 1870
BstZ17I GTATAC 1 cut(s) 1602
Bsu36I CCTNAGG 1 cut(s) 702
BsuI GTATCC 1 cut(s) 1285
BsuRI GGCC 3 cut(s) 812, 1630, 2013
BtsCI GGATG 7 cut(s) 229, 442, 885, 1424, 1657, 1872, 2173
Cac8I GCNNGC 7 cut(s) 127, 972, 1362, 1563, 1625, 1763, 2061
CfoI GCGC 3 cut(s) 165, 1117, 2065
Cfr10I RCCGGY 1 cut(s) 2077
Cfr13I GGNCC 1 cut(s) 810
CseI GACGC 2 cut(s) 1376, 1827
Csp6I GTAC 3 cut(s) 255, 659, 2128
CspAI ACCGGT 1 cut(s) 2077
CviQI GTAC 3 cut(s) 255, 659, 2128
DraI TTTAAA 1 cut(s) 1242
EaeI YGGCCR 1 cut(s) 1628
Eam1104I CTCTTC 1 cut(s) 1485
EarI CTCTTC 1 cut(s) 1485
Eco105I TACGTA 2 cut(s) 254, 1091
Eco130I CCWWGG 2 cut(s) 24, 2014
Eco31I GGTCTC 2 cut(s) 13, 1460
Eco57I CTGAAG 2 cut(s) 936, 1296
Eco72I CACGTG 1 cut(s) 205
Eco81I CCTNAGG 1 cut(s) 702
Eco91I GGTNACC 1 cut(s) 1104
EcoO65I GGTNACC 1 cut(s) 1104
EcoRII CCWGG 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 24, 2014
EcoT22I ATGCAT 3 cut(s) 786, 976, 2295
ErhI CCWWGG 2 cut(s) 24, 2014
FaqI GGGAC 1 cut(s) 1134
FbaI TGATCA 1 cut(s) 2161
FblI GTMKAC 1 cut(s) 1601
Fnu4HI GCNGC 3 cut(s) 762, 1011, 1628
FokI GGATG 7 cut(s) 216, 449, 872, 1411, 1664, 1879, 2160
Fsp4HI GCNGC 3 cut(s) 762, 1011, 1628
FspAI RTGCGCAY 1 cut(s) 1116
FspBI CTAG 3 cut(s) 96, 120, 2274
FspI TGCGCA 2 cut(s) 1116, 2064
GlaI GCGC 3 cut(s) 164, 1116, 2064
GluI GCNGC 3 cut(s) 762, 1011, 1628
GsuI CTGGAG 1 cut(s) 1201
HaeIII GGCC 3 cut(s) 812, 1630, 2013
HapII CCGG 2 cut(s) 1428, 2078
HgaI GACGC 2 cut(s) 1376, 1827
HhaI GCGC 3 cut(s) 165, 1117, 2065
Hin1I GRCGYC 2 cut(s) 1300, 1387
Hin6I GCGC 3 cut(s) 163, 1115, 2063
HinP1I GCGC 3 cut(s) 163, 1115, 2063
HincII GTYRAC 1 cut(s) 1924
HindII GTYRAC 1 cut(s) 1924
HinfI GANTC 4 cut(s) 443, 680, 805, 1214
HpaII CCGG 2 cut(s) 1428, 2078
HphI GGTGA 2 cut(s) 1166, 2270
Hpy166II GTNNAC 9 cut(s) 373, 821, 905, 1225, 1602, 1807, 1820, 1924, 2026
Hpy188III TCNNGA 5 cut(s) 473, 512, 701, 2141, 2177
Hpy8I GTNNAC 9 cut(s) 373, 821, 905, 1225, 1602, 1807, 1820, 1924, 2026
Hpy99I CGWCG 1 cut(s) 1419
HpyAV CCTTC 3 cut(s) 587, 1213, 1564
HpyCH4III ACNGT 5 cut(s) 1148, 1406, 1611, 2147, 2209
HpyCH4IV ACGT 8 cut(s) 204, 253, 360, 1090, 1300, 1504, 1963, 2002
HpyF10VI GCNNNNNNNGC 6 cut(s) 818, 1043, 1271, 1729, 1750, 2071
HpySE526I ACGT 8 cut(s) 204, 253, 360, 1090, 1300, 1504, 1963, 2002
Hsp92I GRCGYC 2 cut(s) 1300, 1387
HspAI GCGC 3 cut(s) 163, 1115, 2063
Ksp22I TGATCA 1 cut(s) 2161
LmnI GCTCC 2 cut(s) 880, 1357
Lsp1109I GCAGC 1 cut(s) 773
LweI GCATC 7 cut(s) 193, 793, 1079, 1180, 1700, 2251, 2302
MaeI CTAG 3 cut(s) 96, 120, 2274
MaeII ACGT 8 cut(s) 204, 253, 360, 1090, 1300, 1504, 1963, 2002
MaeIII GTNAC 6 cut(s) 208, 463, 1104, 1142, 2080, 2185
MfeI CAATTG 2 cut(s) 727, 2165
MflI RGATCY 3 cut(s) 55, 848, 1870
MhlI GDGCHC 4 cut(s) 412, 823, 885, 1227
MlyI GAGTC 1 cut(s) 1208
MmeI TCCRAC 2 cut(s) 1361, 2176
Mph1103I ATGCAT 3 cut(s) 786, 976, 2295
MroXI GAANNNNTTC 2 cut(s) 1233, 2247
MseI TTAA 8 cut(s) 14, 422, 609, 867, 921, 966, 1241, 1827
MslI CAYNNNNRTG 3 cut(s) 789, 898, 2106
MspI CCGG 2 cut(s) 1428, 2078
MspR9I CCNGG 2 cut(s) 453, 1429
MunI CAATTG 2 cut(s) 727, 2165
MvaI CCWGG 1 cut(s) 453
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 6 cut(s) 818, 1043, 1271, 1729, 1750, 2071
NciI CCSGG 1 cut(s) 1429
NlaIV GGNNCC 2 cut(s) 1236, 1359
NmeAIII GCCGAG 2 cut(s) 77, 838
NmuCI GTSAC 4 cut(s) 208, 463, 1142, 2185
NsbI TGCGCA 2 cut(s) 1116, 2064
NsiI ATGCAT 3 cut(s) 786, 976, 2295
NspI RCATGY 7 cut(s) 269, 342, 379, 784, 827, 974, 1627
NspV TTCGAA 1 cut(s) 803
PaeI GCATGC 2 cut(s) 974, 1627
PciI ACATGT 2 cut(s) 265, 375
PdmI GAANNNNTTC 2 cut(s) 1233, 2247
PfeI GAWTC 3 cut(s) 443, 680, 805
PinAI ACCGGT 1 cut(s) 2077
PkrI GCNGC 3 cut(s) 763, 1012, 1629
PleI GAGTC 1 cut(s) 1208
PmaCI CACGTG 1 cut(s) 205
PmlI CACGTG 1 cut(s) 205
PpsI GAGTC 1 cut(s) 1208
Ppu21I YACGTR 6 cut(s) 205, 254, 1091, 1505, 1964, 2003
PscI ACATGT 2 cut(s) 265, 375
PsiI TTATAA 1 cut(s) 1442
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 451
PspCI CACGTG 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 1104
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 1236, 1359
PspPI GGNCC 1 cut(s) 810
PsuI RGATCY 3 cut(s) 55, 848, 1870
RsaI GTAC 3 cut(s) 256, 660, 2129
RsaNI GTAC 3 cut(s) 255, 659, 2128
RseI CAYNNNNRTG 3 cut(s) 789, 898, 2106
SaqAI TTAA 8 cut(s) 14, 422, 609, 867, 921, 966, 1241, 1827
SatI GCNGC 3 cut(s) 762, 1011, 1628
Sau96I GGNCC 1 cut(s) 810
SchI GAGTC 1 cut(s) 1208
ScrFI CCNGG 2 cut(s) 453, 1429
SduI GDGCHC 4 cut(s) 412, 823, 885, 1227
SfaNI GCATC 7 cut(s) 193, 793, 1079, 1180, 1700, 2251, 2302
SfuI TTCGAA 1 cut(s) 803
SmiMI CAYNNNNRTG 3 cut(s) 789, 898, 2106
SmlI CTYRAG 2 cut(s) 833, 979
SmoI CTYRAG 2 cut(s) 833, 979
SnaBI TACGTA 2 cut(s) 254, 1091
SphI GCATGC 2 cut(s) 974, 1627
SsiI CCGC 2 cut(s) 1010, 1627
SspI AATATT 1 cut(s) 1846
SspMI CTAG 3 cut(s) 96, 120, 2274
StyD4I CCNGG 2 cut(s) 451, 1427
StyI CCWWGG 2 cut(s) 24, 2014
TaaI ACNGT 5 cut(s) 1148, 1406, 1611, 2147, 2209
TaiI ACGT 8 cut(s) 207, 256, 363, 1093, 1303, 1507, 1966, 2005
TaqI TCGA 6 cut(s) 472, 803, 943, 1217, 1646, 1656
TatI WGTACW 2 cut(s) 658, 2127
TauI GCSGC 2 cut(s) 1013, 1630
TfiI GAWTC 3 cut(s) 443, 680, 805
Tru1I TTAA 8 cut(s) 14, 422, 609, 867, 921, 966, 1241, 1827
Tru9I TTAA 8 cut(s) 14, 422, 609, 867, 921, 966, 1241, 1827
TseFI GTSAC 4 cut(s) 208, 463, 1142, 2185
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 4 cut(s) 208, 463, 1142, 2185
TspDTI ATGAA 8 cut(s) 503, 745, 918, 1047, 1532, 1603, 2244, 2256
TspGWI ACGGA 1 cut(s) 1873
VneI GTGCAC 2 cut(s) 819, 1223
XapI RAATTY 3 cut(s) 157, 578, 1996
XceI RCATGY 7 cut(s) 269, 342, 379, 784, 827, 974, 1627
XmiI GTMKAC 1 cut(s) 1601
XmnI GAANNNNTTC 2 cut(s) 1233, 2247
XspI CTAG 3 cut(s) 96, 120, 2274
ZraI GACGTC 1 cut(s) 1301
Zsp2I ATGCAT 3 cut(s) 786, 976, 2295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.