RLG00000028528

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000143
Physical Location & Seq
Forward (+)
23941692 .. 23945922
4231 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028528

Sequence Viewer

Length: 525 bp
ATGGTGCAACTAGTTAGCTCTCCATGGGATGGCGCGATGCCTCTCGATGAGATCTCAAAGGCGCCGATGACACAGAGGCACAGCTTCTGGTGGCTGCGTGATGCTTGGTCGCTGCTAGGTCGCGACTGCACAGCTTCAAGCTTGCCTGGGCCAGTTGGGCTAGCTTACTCCTTTTGGGGCTGGGATGAGAAACTGGACAGCTATCTTGAACGACAACTACACGAGCAGCACAGTGCAAAGATTGGGGCAGACTTCAACAGAGCTATGTTCACACATCTACCTGGACACATTACTGGACGATTTCAGAACCAAGAACTGCCTGAAATTGGAATTGGTTTTGTTAACGGAGACCACTTTGTACAGGTGTCTTGCAAGCGGGATGCCCATTACCACCAATCCCAACAAATTGGTACCCCCATGCTGATGATAAAGCAAGATCATTATACAATAGATACAAGGATCGTCTGCATCAATATACCCAAATACCCCATCCAGAAAGAGTTACTGCCATTTCCGAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

175

Amino Acids

20.0

Weight (kDa)

6.49

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 523
Acc65I GGTACC 1 cut(s) 410
AccB1I GGYRCC 2 cut(s) 61, 410
AccB7I CCANNNNNTGG 1 cut(s) 29
AccII CGCG 2 cut(s) 35, 123
AciI CCGC 1 cut(s) 376
AclWI GGATC 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 360, 412
AfiI CCNNNNNNNGG 2 cut(s) 29, 326
AgsI TTSAA 3 cut(s) 138, 209, 256
AhlI ACTAGT 1 cut(s) 10
AjnI CCWGG 2 cut(s) 145, 280
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 7 cut(s) 18, 84, 134, 141, 164, 201, 263
AluI AGCT 7 cut(s) 18, 84, 134, 141, 164, 201, 263
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 1 cut(s) 467
AlwNI CAGNNNCTG 1 cut(s) 87
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 3 cut(s) 94, 112, 226
Asp718I GGTACC 1 cut(s) 410
AspLEI GCGC 2 cut(s) 35, 64
AspS9I GGNCC 1 cut(s) 149
AsuNHI GCTAGC 1 cut(s) 160
BanI GGYRCC 2 cut(s) 61, 410
BauI CACGAG 1 cut(s) 221
BbvI GCAGC 3 cut(s) 81, 99, 238
BccI CCATC 2 cut(s) 23, 497
BciT130I CCWGG 2 cut(s) 147, 282
BcoDI GTCTC 1 cut(s) 342
BcuI ACTAGT 1 cut(s) 10
BfaI CTAG 3 cut(s) 11, 116, 161
BfoI RGCGCY 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 157
BglII AGATCT 1 cut(s) 51
BisI GCNGC 3 cut(s) 95, 113, 227
BlsI GCNGC 3 cut(s) 96, 114, 228
Bme1390I CCNGG 2 cut(s) 147, 282
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 63, 412
BmrFI CCNGG 2 cut(s) 147, 282
BmsI GCATC 4 cut(s) 27, 91, 370, 477
BmtI GCTAGC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 23, 146
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 326
Bse1I ACTGG 3 cut(s) 152, 198, 298
BseBI CCWGG 2 cut(s) 147, 282
BseDI CCNNGG 2 cut(s) 23, 146
BseGI GGATG 4 cut(s) 34, 190, 385, 489
BseLI CCNNNNNNNGG 2 cut(s) 29, 326
BseNI ACTGG 3 cut(s) 152, 198, 298
BseXI GCAGC 3 cut(s) 81, 99, 238
BseYI CCCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 2 cut(s) 35, 123
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 2 cut(s) 61, 410
BslI CCNNNNNNNGG 2 cut(s) 29, 326
BsmAI GTCTC 1 cut(s) 342
BsnI GGCC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 358
Bsp143I GATC 3 cut(s) 51, 436, 459
Bsp19I CCATGG 1 cut(s) 23
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 1 cut(s) 376
BspANI GGCC 1 cut(s) 151
BspFNI CGCG 2 cut(s) 35, 123
BspLI GGNNCC 2 cut(s) 63, 412
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 467
BspT107I GGYRCC 2 cut(s) 61, 410
BspTNI GGTCTC 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 358
BsrI ACTGG 3 cut(s) 152, 198, 298
BssECI CCNNGG 2 cut(s) 23, 146
BssMI GATC 3 cut(s) 51, 436, 459
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 147, 282
Bst4CI ACNGT 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 143, 162, 374
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 4 cut(s) 34, 190, 385, 489
BstFNI CGCG 2 cut(s) 35, 123
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 2 cut(s) 35, 64
BstKTI GATC 3 cut(s) 54, 439, 462
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 3 cut(s) 51, 436, 459
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 2 cut(s) 147, 282
BstSCI CCNGG 2 cut(s) 145, 280
BstUI CGCG 2 cut(s) 35, 123
BstV1I GCAGC 3 cut(s) 81, 99, 238
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 4 cut(s) 34, 190, 385, 489
BtsIMutI CAGTG 1 cut(s) 238
BtuMI TCGCGA 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 143, 162, 374
CaiI CAGNNNCTG 1 cut(s) 87
CfoI GCGC 2 cut(s) 35, 64
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 2 cut(s) 359, 411
CviAII CATG 2 cut(s) 24, 418
CviQI GTAC 2 cut(s) 359, 411
DinI GGCGCC 1 cut(s) 63
DpnI GATC 3 cut(s) 53, 438, 461
DpnII GATC 3 cut(s) 51, 436, 459
Eco130I CCWWGG 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 145, 280
EcoT14I CCWWGG 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 27, 421
FaiI YATR 6 cut(s) 25, 266, 419, 444, 476, 523
FatI CATG 2 cut(s) 23, 417
FauI CCCGC 1 cut(s) 369
Fnu4HI GCNGC 3 cut(s) 95, 113, 227
FokI GGATG 4 cut(s) 41, 197, 392, 476
Fsp4HI GCNGC 3 cut(s) 95, 113, 227
FspBI CTAG 3 cut(s) 11, 116, 161
GlaI GCGC 2 cut(s) 34, 63
GluI GCNGC 3 cut(s) 95, 113, 227
GsaI CCCAGC 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 1 cut(s) 151
HhaI GCGC 2 cut(s) 35, 64
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 2 cut(s) 27, 421
Hin6I GCGC 2 cut(s) 33, 62
HinP1I GCGC 2 cut(s) 33, 62
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 139
HpaI GTTAAC 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 270, 343
Hpy188I TCNGA 2 cut(s) 306, 516
Hpy188III TCNNGA 4 cut(s) 44, 122, 206, 493
Hpy8I GTNNAC 2 cut(s) 270, 343
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 5 cut(s) 7, 129, 236, 372, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 27, 421
HspAI GCGC 2 cut(s) 33, 62
KasI GGCGCC 1 cut(s) 61
KpnI GGTACC 1 cut(s) 414
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 51, 436, 459
Lsp1109I GCAGC 3 cut(s) 81, 99, 238
LweI GCATC 4 cut(s) 27, 91, 370, 477
MaeI CTAG 3 cut(s) 11, 116, 161
MaeIII GTNAC 1 cut(s) 501
MalI GATC 3 cut(s) 53, 438, 461
MboI GATC 3 cut(s) 51, 436, 459
MflI RGATCY 1 cut(s) 51
MluCI AATT 4 cut(s) 324, 330, 405, 518
Mly113I GGCGCC 1 cut(s) 62
MnlI CCTC 2 cut(s) 51, 69
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 422
MspR9I CCNGG 2 cut(s) 147, 282
MvaI CCWGG 2 cut(s) 147, 282
MvnI CGCG 2 cut(s) 35, 123
MwoI GCNNNNNNNGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 62
NcoI CCATGG 1 cut(s) 23
NdeII GATC 3 cut(s) 51, 436, 459
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 2 cut(s) 27, 421
NlaIV GGNNCC 2 cut(s) 63, 412
NruI TCGCGA 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 3 cut(s) 96, 114, 228
PluTI GGCGCC 1 cut(s) 65
PsiI TTATAA 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 145, 280
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 2 cut(s) 145, 280
PspN4I GGNNCC 2 cut(s) 63, 412
PspPI GGNCC 1 cut(s) 149
PsrI GAACNNNNNNTAC 2 cut(s) 201, 233
PstNI CAGNNNCTG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 51
RruI TCGCGA 1 cut(s) 123
RsaI GTAC 2 cut(s) 360, 412
RsaNI GTAC 2 cut(s) 359, 411
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 95, 113, 227
Sau3AI GATC 3 cut(s) 51, 436, 459
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 147, 282
SfaNI GCATC 4 cut(s) 27, 91, 370, 477
SfoI GGCGCC 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 422
SpeI ACTAGT 1 cut(s) 10
Sse9I AATT 4 cut(s) 324, 330, 405, 518
SsiI CCGC 1 cut(s) 376
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 3 cut(s) 11, 116, 161
StyD4I CCNGG 2 cut(s) 145, 280
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 45
TasI AATT 4 cut(s) 324, 330, 405, 518
TatI WGTACW 1 cut(s) 358
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 238
TseI GCWGC 3 cut(s) 94, 112, 226
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 29
XspI CTAG 3 cut(s) 11, 116, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.