Rmu_co8269185.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8269185.1
OG0000143
Physical Location & Seq
Reverse (-)
1 .. 746
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8269185.1_g000001.1.cds

Sequence Viewer

Length: 656 bp
atgctgtgggctcgtgaggccgggaaacgaaacgggtttgttgttgtgacggtacgatctgatttgggtggtaaaagtttgaaaccaagagttacattagggtgtgagcgtggtggaaaatttaaggttcacaaagaaagatgtgataaaggtgggaagcaaagatgtgggactggcagcaagaagtgtggctgtcctttcacattaaagggagagaagttaacaactggtgatggatggatgctaaaggtagtatgtggagtgcacaatcatgccttaaccgagtctcttgaagggcactcatatgcagggaggttgtcagaggaggagacttcactcttgatagacttatcaaagagtttagtacgacccaaagaaatcttgaacaaattgaagcaaagggattcactcaatgttacaactataagaactatctacaatgcacgccagaggcaaagagttaaagagaaagcagggaggtctcaaatggaacaacttttatgtaagttgaatgagcataattatcttgagtggcacaggagttgccctatttcagggagtgtgctggacttgttttgggcacaccctgtgagcttggaattgttacgcgtatttccaacgatcttgatgatggattgcacttttaaaaccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

218

Amino Acids

24.61

Weight (kDa)

9.66

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 609
AcsI RAATTY 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 589
AfaI GTAC 2 cut(s) 54, 366
AfiI CCNNNNNNNGG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 607
AgsI TTSAA 5 cut(s) 82, 293, 385, 394, 511
AluBI AGCT 1 cut(s) 594
AluI AGCT 1 cut(s) 594
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 3 cut(s) 291, 323, 486
Alw44I GTGCAC 1 cut(s) 263
AoxI GGCC 1 cut(s) 18
ApaLI GTGCAC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 242
BaeGI GKGCMC 3 cut(s) 267, 300, 583
BanII GRGCYC 1 cut(s) 13
BauI CACGAG 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 189
BccI CCATC 3 cut(s) 227, 231, 625
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 291, 323, 486
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 548
BpuMI CCSGG 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 486
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse1I ACTGG 2 cut(s) 178, 232
BseGI GGATG 2 cut(s) 242, 246
BseLI CCNNNNNNNGG 1 cut(s) 554
BseNI ACTGG 2 cut(s) 178, 232
BseRI GAGGAG 2 cut(s) 338, 341
BseSI GKGCMC 3 cut(s) 267, 300, 583
BseXI GCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 609
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 3 cut(s) 291, 323, 486
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 486
Bsp1286I GDGCHC 4 cut(s) 13, 267, 300, 583
Bsp143I GATC 2 cut(s) 56, 621
BspANI GGCC 1 cut(s) 20
BspFNI CGCG 1 cut(s) 609
BspTNI GGTCTC 1 cut(s) 486
BsrI ACTGG 2 cut(s) 178, 232
BssMI GATC 2 cut(s) 56, 621
BssSI CACGAG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 445
BstENI CCTNNNNNAGG 1 cut(s) 552
BstF5I GGATG 2 cut(s) 242, 246
BstFNI CGCG 1 cut(s) 609
BstKTI GATC 2 cut(s) 59, 624
BstMAI GTCTC 3 cut(s) 291, 323, 486
BstMBI GATC 2 cut(s) 56, 621
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 20
BstSLI GKGCMC 3 cut(s) 267, 300, 583
BstUI CGCG 1 cut(s) 609
BstV1I GCAGC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 242, 246
Cac8I GCNNGC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 53, 365
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 1 cut(s) 272
CviJI RGCY 4 cut(s) 11, 20, 192, 594
CviKI_1 RGCY 4 cut(s) 11, 20, 192, 594
CviQI GTAC 2 cut(s) 53, 365
DpnI GATC 2 cut(s) 58, 623
DpnII GATC 2 cut(s) 56, 621
DraI TTTAAA 1 cut(s) 646
DraIII CACNNNGTG 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 1 cut(s) 275
FaiI YATR 7 cut(s) 256, 273, 304, 306, 425, 502, 519
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 271
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 2 cut(s) 249, 253
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 275
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 2 cut(s) 284, 404
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 3 cut(s) 130, 222, 265
Hpy188I TCNGA 2 cut(s) 61, 322
Hpy188III TCNNGA 6 cut(s) 14, 290, 340, 382, 527, 625
Hpy8I GTNNAC 3 cut(s) 130, 222, 265
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 4 cut(s) 265, 308, 443, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 275
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 56, 621
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 231
MaeIII GTNAC 4 cut(s) 46, 91, 415, 603
MalI GATC 2 cut(s) 58, 623
MboI GATC 2 cut(s) 56, 621
MhlI GDGCHC 4 cut(s) 13, 267, 300, 583
MluCI AATT 4 cut(s) 119, 389, 520, 599
MluI ACGCGT 1 cut(s) 607
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 641
MnlI CCTC 6 cut(s) 10, 306, 316, 319, 444, 471
MseI TTAA 6 cut(s) 123, 206, 221, 278, 462, 645
MslI CAYNNNNRTG 3 cut(s) 100, 270, 303
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 22
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 22
NdeI CATATG 1 cut(s) 304
NdeII GATC 2 cut(s) 56, 621
NlaIII CATG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 404
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
RsaI GTAC 2 cut(s) 54, 366
RsaNI GTAC 2 cut(s) 53, 365
RseI CAYNNNNRTG 3 cut(s) 100, 270, 303
SaqAI TTAA 6 cut(s) 123, 206, 221, 278, 462, 645
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 56, 621
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 4 cut(s) 13, 267, 300, 583
SetI ASST 6 cut(s) 129, 154, 252, 317, 482, 596
SfaNI GCATC 1 cut(s) 231
SmiMI CAYNNNNRTG 3 cut(s) 100, 270, 303
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 4 cut(s) 119, 389, 520, 599
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 52
TasI AATT 4 cut(s) 119, 389, 520, 599
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 6 cut(s) 123, 206, 221, 278, 462, 645
Tru9I TTAA 6 cut(s) 123, 206, 221, 278, 462, 645
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 46
VneI GTGCAC 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 552
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.