Rh1CG084700

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000143
Physical Location & Seq
Reverse (-)
17643461 .. 17644147
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG084700.1

Sequence Viewer

Length: 582 bp
ATGAAAGCTGCATTGAAGAGACCAAATAGGAGACGACCAAAAGAGGCAAAAGGTAATATTCAATCAGCAAAATTAACTCCTGGAACTGCTAGTACTAGTGAGACAACCATGAAGACAAAGAAACGACCATCCAAAGTGGGAGAACATATCAGTCCTTCACTAATTCCCACTGGCAATATTATGGGTTTAAGAACACCACCAAGGAAGTCAGATAAGCGAGCACAAAAATTGGCAAAAGAGACTAGGGTAACTACAAAAAAAGCTAAGTTGCAGTTGAATCTACGTCAAGATGTCAATCCATCTGAATTGACACAGGAGTATAATGACTGGTTTCCTCAAGAAATGTGGCCATTTTTCTTAGCAGCCAATGATGTAAAGGATGATGGTAATTGTGGTTTTAAAGCTATAGCTGAGTTTATGGGATATGGTGAGAATAATTGGCGCCGTGCACGCAAGGAGTTGTTGCAAGAGTTTCATCGGAATAAGCATGCATATCGATTACTATCCCGATATGCTGAGCGACTGGAAGAGGTGGAGAGGAGATTAGATTATTTTAATGACTTTCTGACTGAAGAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

193

Amino Acids

22.52

Weight (kDa)

9.96

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 442
AfaI GTAC 1 cut(s) 94
AgsI TTSAA 3 cut(s) 16, 62, 277
AhlI ACTAGT 1 cut(s) 95
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 4 cut(s) 8, 263, 404, 410
AluI AGCT 4 cut(s) 8, 263, 404, 410
Alw21I GWGCWC 2 cut(s) 223, 451
Alw26I GTCTC 4 cut(s) 13, 25, 95, 233
Alw44I GTGCAC 1 cut(s) 447
AoxI GGCC 1 cut(s) 347
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 8, 362
AspLEI GCGC 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 451
BalI TGGCCA 1 cut(s) 349
BanI GGYRCC 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 2 cut(s) 223, 451
BbvI GCAGC 1 cut(s) 374
BccI CCATC 3 cut(s) 136, 307, 377
BceAI ACGGC 1 cut(s) 429
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 4 cut(s) 13, 25, 95, 233
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 3 cut(s) 90, 96, 243
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 445
BisI GCNGC 2 cut(s) 9, 363
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 2 cut(s) 10, 364
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 321
Bsa29I ATCGAT 1 cut(s) 496
BsaBI GATNNNNATC 2 cut(s) 294, 502
BsaHI GRCGYC 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 175, 332, 528
Bse8I GATNNNNATC 2 cut(s) 294, 502
BseBI CCWGG 1 cut(s) 81
BseCI ATCGAT 1 cut(s) 496
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 128, 385
BseJI GATNNNNATC 2 cut(s) 294, 502
BseMII CTCAG 2 cut(s) 402, 507
BseNI ACTGG 3 cut(s) 175, 332, 528
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 1 cut(s) 374
BshFI GGCC 1 cut(s) 349
BshNI GGYRCC 1 cut(s) 441
BshVI ATCGAT 1 cut(s) 496
BsiHKAI GWGCWC 2 cut(s) 223, 451
BsmAI GTCTC 4 cut(s) 13, 25, 95, 233
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 223, 451
Bsp1720I GCTNAGC 1 cut(s) 516
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 2 cut(s) 403, 508
BspDI ATCGAT 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 441
BspTNI GGTCTC 1 cut(s) 13
BsrI ACTGG 3 cut(s) 175, 332, 528
BssECI CCNNGG 1 cut(s) 200
BssNI GRCGYC 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 81
Bst6I CTCTTC 2 cut(s) 11, 522
BstACI GRCGYC 1 cut(s) 442
BstC8I GCNNGC 3 cut(s) 219, 451, 489
BstDEI CTNAG 4 cut(s) 264, 358, 411, 516
BstF5I GGATG 2 cut(s) 128, 385
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 1 cut(s) 444
BstMAI GTCTC 4 cut(s) 13, 25, 95, 233
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 496
BsuRI GGCC 1 cut(s) 349
BsuTUI ATCGAT 1 cut(s) 496
BtsCI GGATG 2 cut(s) 128, 385
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 3 cut(s) 219, 451, 489
CfoI GCGC 1 cut(s) 444
ClaI ATCGAT 1 cut(s) 496
Csp6I GTAC 1 cut(s) 93
CspCI CAANNNNNGTGG 2 cut(s) 326, 361
CviAII CATG 2 cut(s) 109, 488
CviJI RGCY 6 cut(s) 8, 263, 349, 365, 404, 410
CviKI_1 RGCY 6 cut(s) 8, 263, 349, 365, 404, 410
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 4 cut(s) 264, 358, 411, 516
DinI GGCGCC 1 cut(s) 443
DraI TTTAAA 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 11, 522
EarI CTCTTC 2 cut(s) 11, 522
Eco130I CCWWGG 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 493
EgeI GGCGCC 1 cut(s) 443
EheI GGCGCC 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 2 cut(s) 112, 491
FatI CATG 2 cut(s) 108, 487
Fnu4HI GCNGC 2 cut(s) 9, 363
FokI GGATG 2 cut(s) 115, 392
Fsp4HI GCNGC 2 cut(s) 9, 363
FspBI CTAG 3 cut(s) 90, 96, 243
GlaI GCGC 1 cut(s) 443
GluI GCNGC 2 cut(s) 9, 363
HaeII RGCGCY 1 cut(s) 445
HaeIII GGCC 1 cut(s) 349
HhaI GCGC 1 cut(s) 444
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 2 cut(s) 112, 491
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 4 cut(s) 211, 304, 480, 567
Hpy188III TCNNGA 3 cut(s) 287, 338, 507
Hpy8I GTNNAC 1 cut(s) 449
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 5 cut(s) 11, 271, 449, 466, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
HpyF3I CTNAG 4 cut(s) 264, 358, 411, 516
HpySE526I ACGT 1 cut(s) 283
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 2 cut(s) 112, 491
HspAI GCGC 1 cut(s) 442
KasI GGCGCC 1 cut(s) 441
LpnPI CCDG 6 cut(s) 66, 93, 156, 299, 313, 509
Lsp1109I GCAGC 1 cut(s) 374
MaeI CTAG 3 cut(s) 90, 96, 243
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 247
MboII GAAGA 3 cut(s) 28, 124, 539
MhlI GDGCHC 2 cut(s) 223, 451
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 6 cut(s) 71, 162, 227, 305, 388, 436
MluNI TGGCCA 1 cut(s) 349
Mly113I GGCGCC 1 cut(s) 442
MnlI CCTC 4 cut(s) 37, 345, 523, 531
Mox20I TGGCCA 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 493
MscI TGGCCA 1 cut(s) 349
MseI TTAA 4 cut(s) 74, 188, 399, 555
Msp20I TGGCCA 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 450
NarI GGCGCC 1 cut(s) 442
NlaIII CATG 2 cut(s) 112, 491
NlaIV GGNNCC 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 1 cut(s) 491
PaeI GCATGC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 2 cut(s) 10, 364
PluTI GGCGCC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 443
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 4 cut(s) 74, 188, 399, 555
SatI GCNGC 2 cut(s) 9, 363
ScaI AGTACT 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 223, 451
SetI ASST 7 cut(s) 10, 55, 265, 286, 406, 412, 534
SfcI CTRYAG 1 cut(s) 405
SfoI GGCGCC 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
SpeI ACTAGT 1 cut(s) 95
SphI GCATGC 1 cut(s) 491
Sse9I AATT 6 cut(s) 71, 162, 227, 305, 388, 436
SspDI GGCGCC 1 cut(s) 441
SspI AATATT 2 cut(s) 58, 178
SspMI CTAG 3 cut(s) 90, 96, 243
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 200
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 496
TasI AATT 6 cut(s) 71, 162, 227, 305, 388, 436
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 4 cut(s) 74, 188, 399, 555
Tru9I TTAA 4 cut(s) 74, 188, 399, 555
TscAI CASTG 1 cut(s) 175
TseI GCWGC 2 cut(s) 8, 362
TspDTI ATGAA 3 cut(s) 17, 125, 464
TspRI CASTG 1 cut(s) 175
VneI GTGCAC 1 cut(s) 447
XceI RCATGY 1 cut(s) 491
XspI CTAG 3 cut(s) 90, 96, 243
ZrmI AGTACT 1 cut(s) 94
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.