Rmu_sc0003291.1_g000036

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003291.1
OG0000143
Physical Location & Seq
Forward (+)
177777 .. 178256
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003291.1_g000036.1.cds

Sequence Viewer

Length: 480 bp
atgaagaatgagtttaaggtaatagtgggttttgtatcacatgctgccctggattatattttgggagagtctgagaggatggatgttattggaactaatgagaatgcatatggctgtactttgagaaaaacacatgggttgccatgtgcacatgagatggcaatttataaggagaatggcagccctattccacttgattgtattcatcgtcattggaggaaattagatttgtttcatgccccacaaagtaatgaccctatagatattccattgaagtcactagaggaaagattcatgacttggttacatgaaagggacgatgacaccaagagacaggtaaaaagaaagttagaggaaattatgaatccaggatgtaccctgcttacagaaccacaagccaagatcaacacaaaaggacgtccaactaaagaagaagcttctacgcgtcgtatgttatcttcttttgagattgcattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

159

Amino Acids

18.3

Weight (kDa)

6.66

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AatII GACGTC 1 cut(s) 421
AccII CGCG 1 cut(s) 445
AcyI GRCGYC 1 cut(s) 418
AfaI GTAC 2 cut(s) 118, 376
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 2 cut(s) 48, 367
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 325
Alw44I GTGCAC 1 cut(s) 147
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 44, 180
BaeGI GKGCMC 1 cut(s) 151
BarI GAAGNNNNNNTAC 2 cut(s) 442, 474
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 31, 192
BccI CCATC 2 cut(s) 73, 151
BciT130I CCWGG 2 cut(s) 50, 369
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 2 cut(s) 45, 181
BlsI GCNGC 2 cut(s) 46, 182
Bme1390I CCNGG 2 cut(s) 50, 369
BmrFI CCNGG 2 cut(s) 50, 369
BsaHI GRCGYC 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 48
BseBI CCWGG 2 cut(s) 50, 369
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 3 cut(s) 84, 88, 377
BseMII CTCAG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 2 cut(s) 31, 192
Bsh1236I CGCG 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 402
BspCNI CTCAG 1 cut(s) 64
BspFNI CGCG 1 cut(s) 445
BspHI TCATGA 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 402
BssNI GRCGYC 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 50, 369
BstACI GRCGYC 1 cut(s) 418
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 3 cut(s) 84, 88, 377
BstFNI CGCG 1 cut(s) 445
BstKTI GATC 1 cut(s) 405
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 1 cut(s) 402
BstNI CCWGG 2 cut(s) 50, 369
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 48, 367
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 151
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 31, 192
BtsCI GGATG 3 cut(s) 84, 88, 377
CciI TCATGA 1 cut(s) 294
CseI GACGC 1 cut(s) 434
Csp6I GTAC 2 cut(s) 117, 375
CviAII CATG 7 cut(s) 41, 134, 144, 152, 236, 295, 308
CviJI RGCY 4 cut(s) 114, 183, 398, 437
CviKI_1 RGCY 4 cut(s) 114, 183, 398, 437
CviQI GTAC 2 cut(s) 117, 375
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 48, 367
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 7 cut(s) 44, 137, 147, 155, 239, 298, 311
FaqI GGGAC 1 cut(s) 329
FatI CATG 7 cut(s) 40, 133, 143, 151, 235, 294, 307
FauNDI CATATG 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 45, 181
FokI GGATG 3 cut(s) 91, 95, 384
Fsp4HI GCNGC 2 cut(s) 45, 181
FspBI CTAG 1 cut(s) 281
GluI GCNGC 2 cut(s) 45, 181
HgaI GACGC 1 cut(s) 434
Hin1I GRCGYC 1 cut(s) 418
Hin1II CATG 7 cut(s) 44, 137, 147, 155, 239, 298, 311
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 3 cut(s) 68, 291, 364
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 450
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 107, 149, 473
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 418
Hsp92I GRCGYC 1 cut(s) 418
Hsp92II CATG 7 cut(s) 44, 137, 147, 155, 239, 298, 311
Kzo9I GATC 1 cut(s) 402
LpnPI CCDG 6 cut(s) 35, 62, 320, 354, 381, 392
Lsp1109I GCAGC 2 cut(s) 31, 192
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 276, 303
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 3 cut(s) 16, 443, 450
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 162, 221, 357
MluI ACGCGT 1 cut(s) 443
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 446
MnlI CCTC 4 cut(s) 69, 210, 277, 346
Mph1103I ATGCAT 1 cut(s) 109
MseI TTAA 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 50, 369
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 2 cut(s) 50, 369
MvnI CGCG 1 cut(s) 445
NdeI CATATG 1 cut(s) 109
NdeII GATC 1 cut(s) 402
NlaIII CATG 7 cut(s) 44, 137, 147, 155, 239, 298, 311
NmuCI GTSAC 1 cut(s) 276
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 44
PagI TCATGA 1 cut(s) 294
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 291, 364
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 2 cut(s) 46, 182
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PsiI TTATAA 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 48, 367
PspGI CCWGG 2 cut(s) 48, 367
RsaI GTAC 2 cut(s) 118, 376
RsaNI GTAC 2 cut(s) 117, 375
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 45, 181
Sau3AI GATC 1 cut(s) 402
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 50, 369
SduI GDGCHC 1 cut(s) 151
SetI ASST 4 cut(s) 21, 339, 421, 439
SfcI CTRYAG 1 cut(s) 258
Sse9I AATT 3 cut(s) 162, 221, 357
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 48, 367
TaiI ACGT 1 cut(s) 421
TasI AATT 3 cut(s) 162, 221, 357
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 2 cut(s) 291, 364
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 2 cut(s) 44, 180
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 6 cut(s) 17, 194, 224, 283, 324, 377
VneI GTGCAC 1 cut(s) 147
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 281
ZraI GACGTC 1 cut(s) 419
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.