Rw0G009990

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00413
OG0000143
Physical Location & Seq
Forward (+)
13245 .. 14469
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009990.1

Sequence Viewer

Length: 1098 bp
ATGCAAAAAGAGGAACAACAAGATTATCAATGGGCTCTTGAAATGTTCAGTAAGTTGTTGGGAGATGGTAATCATCCATTGGCGATTGTAAGTGATAGGGAGTTGGCATTAATGAAAGCAGTACAAGTTTTTAAGGAAGATGTAGATTGGGTTGGTTTTATGTCTTCTTGGAGTACCCTTGTAAAGTCTTGGGACGTGTCGACGTTTAATGAAGCTTGGAACCGTTTTCAAATTGAGTACAAAGGCTATGCTTCCATTCTGACTTACATTGGCAATACTTGGCTTCCATGGAAAGAGATGTTTGTATTTGCATGGACCGGACAGACTTCACACTTTGGTAATAATGTTACTTCTAGAGCAGAAGGTGCACATGGAACCTTAAAGAAATATCTTCAAGTTTCTACTGGTGGTCTCCGTGAAGTGAAGGAAAATATTTGTCTTGCTATTCAAAATCAGTTTCAAGAAATTAGAACTCAACTTGCAAGTGAAAAGATTCATGTTCCTCAAAAGCTTTGCATCCCTTTCTTTAAAGAGGTGATTAATAAGGTATGTTTCTATGCTTTGTTTGAGTTACAAAAGCAATATTTGTTGGCAAATACCAAAGACTATTCATCCCAATGCAAGGGCCAGTTTTCCAAAACCATGGGTCTTCCATGTGTGCACATGATCAAGCAGATGAGGATTGAAGTGCTGCCTTTAAATCAGATTCATGAGCAATGGAGGATTGATACAAGATCATTCACTAATGATCATTGTGCAAAGAAGTATGAAAAACAGCCTCTTATGCAAAAAGAAAATACATTAAGGCAACTTTCTCAGATTCTTGGTGCATCTTGTCTTTTAATTTTTGAACCTACTCTTCAACCTCACATAGTTCGTCCGGTAGGATCAAATAAAAGAAAGGAAACTAGCTCTACAAGGCAGGAACCTTCATATTTTGAGAGAGTGGGGAAGGCACCTCGAAAATGTAGTGGCTGGGGTAATATTGGCCATTATCGTAACAAGCACTACTACAAAATTGGGCTTCGTAGACACCTGGCCCAAAGATTCAAAGACGTTTTTTTCTTTGACTGTCCTTGTAACTCATTAGCGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

365

Amino Acids

42.55

Weight (kDa)

9.25

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 955
AccI GTMKAC 2 cut(s) 200, 1030
AclWI GGATC 1 cut(s) 895
AcoI YGGCCR 1 cut(s) 988
AfaI GTAC 3 cut(s) 123, 175, 239
AfiI CCNNNNNNNGG 1 cut(s) 622
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 9 cut(s) 41, 230, 395, 449, 461, 686, 851, 863, 1051
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 1035
AluBI AGCT 3 cut(s) 215, 511, 912
AluI AGCT 3 cut(s) 215, 511, 912
Alw21I GWGCWC 2 cut(s) 370, 663
Alw26I GTCTC 1 cut(s) 416
Alw44I GTGCAC 2 cut(s) 366, 659
AlwI GGATC 1 cut(s) 895
AoxI GGCC 3 cut(s) 625, 988, 1038
ApaLI GTGCAC 2 cut(s) 366, 659
ApeKI GCWGC 1 cut(s) 691
AseI ATTAAT 2 cut(s) 110, 540
Asp700I GAANNNNTTC 1 cut(s) 492
AspS9I GGNCC 3 cut(s) 315, 625, 1039
AsuHPI GGTGA 1 cut(s) 547
AvaII GGWCC 1 cut(s) 315
BaeGI GKGCMC 2 cut(s) 370, 663
BalI TGGCCA 1 cut(s) 990
BanI GGYRCC 1 cut(s) 955
BanII GRGCYC 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 156, 641
Bbv12I GWGCWC 2 cut(s) 370, 663
BbvI GCAGC 1 cut(s) 678
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 1037
BclI TGATCA 2 cut(s) 666, 748
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 2 cut(s) 354, 909
BisI GCNGC 1 cut(s) 692
BlsI GCNGC 1 cut(s) 693
Bme1390I CCNGG 1 cut(s) 1037
Bme18I GGWCC 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 3 cut(s) 315, 625, 1039
BmiI GGNNCC 4 cut(s) 221, 376, 927, 957
BmrFI CCNGG 1 cut(s) 1037
BmsI GCATC 2 cut(s) 525, 839
BpiI GAAGAC 2 cut(s) 156, 641
BsaBI GATNNNNATC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 287, 642
BsaWI WCCGGW 2 cut(s) 317, 880
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse1I ACTGG 2 cut(s) 409, 628
Bse3DI GCAATG 1 cut(s) 722
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 1037
BseDI CCNNGG 2 cut(s) 287, 642
BseGI GGATG 3 cut(s) 73, 516, 611
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 622
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 1 cut(s) 830
BseNI ACTGG 2 cut(s) 409, 628
BseSI GKGCMC 2 cut(s) 370, 663
BseXI GCAGC 1 cut(s) 678
BseYI CCCAGC 1 cut(s) 975
BshFI GGCC 3 cut(s) 627, 990, 1040
BshNI GGYRCC 1 cut(s) 955
BsiHKAI GWGCWC 2 cut(s) 370, 663
BsiSI CCGG 2 cut(s) 318, 881
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 622
BsmAI GTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 3 cut(s) 627, 990, 1040
Bso31I GGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 3 cut(s) 37, 370, 663
Bsp143I GATC 4 cut(s) 666, 734, 748, 887
Bsp19I CCATGG 2 cut(s) 287, 642
BspANI GGCC 3 cut(s) 627, 990, 1040
BspCNI CTCAG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 221, 376, 927, 957
BspPI GGATC 1 cut(s) 895
BspT107I GGYRCC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 722
BsrI ACTGG 2 cut(s) 409, 628
BssECI CCNNGG 2 cut(s) 287, 642
BssMI GATC 4 cut(s) 666, 734, 748, 887
BssT1I CCWWGG 2 cut(s) 287, 642
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 2 cut(s) 224, 1073
Bst6I CTCTTC 1 cut(s) 864
BstAPI GCANNNNNTGC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 816
BstDSI CCRYGG 2 cut(s) 287, 642
BstF5I GGATG 3 cut(s) 73, 516, 611
BstKTI GATC 4 cut(s) 669, 737, 751, 890
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 4 cut(s) 666, 734, 748, 887
BstMWI GCNNNNNNNGC 2 cut(s) 365, 784
BstNI CCWGG 1 cut(s) 1037
BstSCI CCNGG 1 cut(s) 1035
BstSLI GKGCMC 2 cut(s) 370, 663
BstV1I GCAGC 1 cut(s) 678
BstV2I GAAGAC 2 cut(s) 156, 641
BstXI CCANNNNNNTGG 1 cut(s) 643
BsuRI GGCC 3 cut(s) 627, 990, 1040
BtgI CCRYGG 2 cut(s) 287, 642
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 3 cut(s) 73, 516, 611
CciI TCATGA 1 cut(s) 709
Cfr13I GGNCC 3 cut(s) 315, 625, 1039
Csp6I GTAC 3 cut(s) 122, 174, 238
CviAII CATG 8 cut(s) 288, 312, 371, 497, 643, 654, 664, 710
CviQI GTAC 3 cut(s) 122, 174, 238
DdeI CTNAG 1 cut(s) 816
DpnI GATC 4 cut(s) 668, 736, 750, 889
DpnII GATC 4 cut(s) 666, 734, 748, 887
DraI TTTAAA 2 cut(s) 529, 699
EaeI YGGCCR 1 cut(s) 988
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco130I CCWWGG 2 cut(s) 287, 642
Eco24I GRGCYC 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 1035
EcoT14I CCWWGG 2 cut(s) 287, 642
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 2 cut(s) 287, 642
FaeI CATG 8 cut(s) 291, 315, 374, 500, 646, 657, 667, 713
FaqI GGGAC 1 cut(s) 206
FatI CATG 8 cut(s) 287, 311, 370, 496, 642, 653, 663, 709
FbaI TGATCA 2 cut(s) 666, 748
FblI GTMKAC 2 cut(s) 200, 1030
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 3 cut(s) 60, 503, 598
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 2 cut(s) 354, 909
GluI GCNGC 1 cut(s) 692
GsaI CCCAGC 1 cut(s) 979
HaeIII GGCC 3 cut(s) 627, 990, 1040
HapII CCGG 2 cut(s) 318, 881
Hin1II CATG 8 cut(s) 291, 315, 374, 500, 646, 657, 667, 713
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HindIII AAGCTT 2 cut(s) 213, 509
HinfI GANTC 4 cut(s) 493, 706, 820, 1047
HpaII CCGG 2 cut(s) 318, 881
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 4 cut(s) 201, 368, 661, 1031
Hpy188I TCNGA 3 cut(s) 261, 705, 819
Hpy188III TCNNGA 4 cut(s) 38, 354, 461, 710
Hpy8I GTNNAC 4 cut(s) 201, 368, 661, 1031
Hpy99I CGWCG 2 cut(s) 205, 1096
HpyAV CCTTC 4 cut(s) 356, 418, 939, 946
HpyCH4III ACNGT 2 cut(s) 224, 1073
HpyCH4IV ACGT 4 cut(s) 195, 203, 1056, 1094
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 784
HpyF3I CTNAG 1 cut(s) 816
HpySE526I ACGT 4 cut(s) 195, 203, 1056, 1094
Hsp92II CATG 8 cut(s) 291, 315, 374, 500, 646, 657, 667, 713
Ksp22I TGATCA 2 cut(s) 666, 748
Kzo9I GATC 4 cut(s) 666, 734, 748, 887
LpnPI CCDG 8 cut(s) 331, 390, 641, 894, 908, 961, 1022, 1049
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 2 cut(s) 525, 839
MaeI CTAG 2 cut(s) 354, 909
MaeII ACGT 4 cut(s) 195, 203, 1056, 1094
MaeIII GTNAC 4 cut(s) 346, 570, 998, 1079
MalI GATC 4 cut(s) 668, 736, 750, 889
MboI GATC 4 cut(s) 666, 734, 748, 887
MboII GAAGA 5 cut(s) 149, 156, 383, 641, 851
MhlI GDGCHC 3 cut(s) 37, 370, 663
MlsI TGGCCA 1 cut(s) 990
MluCI AATT 4 cut(s) 231, 465, 843, 1017
MluNI TGGCCA 1 cut(s) 990
MnlI CCTC 8 cut(s) 4, 513, 526, 672, 714, 789, 876, 969
Mox20I TGGCCA 1 cut(s) 990
MroXI GAANNNNTTC 1 cut(s) 492
MscI TGGCCA 1 cut(s) 990
MseI TTAA 9 cut(s) 110, 132, 207, 380, 528, 540, 698, 803, 842
MslI CAYNNNNRTG 1 cut(s) 616
Msp20I TGGCCA 1 cut(s) 990
MspI CCGG 2 cut(s) 318, 881
MspR9I CCNGG 1 cut(s) 1037
MvaI CCWGG 1 cut(s) 1037
MwoI GCNNNNNNNGC 2 cut(s) 365, 784
NcoI CCATGG 2 cut(s) 287, 642
NdeII GATC 4 cut(s) 666, 734, 748, 887
NlaIII CATG 8 cut(s) 291, 315, 374, 500, 646, 657, 667, 713
NlaIV GGNNCC 4 cut(s) 221, 376, 927, 957
PagI TCATGA 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 4 cut(s) 493, 706, 820, 1047
PkrI GCNGC 1 cut(s) 693
PshBI ATTAAT 2 cut(s) 110, 540
Psp6I CCWGG 1 cut(s) 1035
PspFI CCCAGC 1 cut(s) 975
PspGI CCWGG 1 cut(s) 1035
PspN4I GGNNCC 4 cut(s) 221, 376, 927, 957
PspPI GGNCC 3 cut(s) 315, 625, 1039
RsaI GTAC 3 cut(s) 123, 175, 239
RsaNI GTAC 3 cut(s) 122, 174, 238
RseI CAYNNNNRTG 1 cut(s) 616
SalI GTCGAC 1 cut(s) 199
SaqAI TTAA 9 cut(s) 110, 132, 207, 380, 528, 540, 698, 803, 842
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 4 cut(s) 666, 734, 748, 887
Sau96I GGNCC 3 cut(s) 315, 625, 1039
ScrFI CCNGG 1 cut(s) 1037
SduI GDGCHC 3 cut(s) 37, 370, 663
SfaNI GCATC 2 cut(s) 525, 839
SinI GGWCC 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 616
Sse9I AATT 4 cut(s) 231, 465, 843, 1017
SspI AATATT 3 cut(s) 433, 584, 985
SspMI CTAG 2 cut(s) 354, 909
StyD4I CCNGG 1 cut(s) 1035
StyI CCWWGG 2 cut(s) 287, 642
TaaI ACNGT 2 cut(s) 224, 1073
TaiI ACGT 4 cut(s) 198, 206, 1059, 1097
TaqI TCGA 2 cut(s) 200, 961
TasI AATT 4 cut(s) 231, 465, 843, 1017
TatI WGTACW 2 cut(s) 121, 237
TfiI GAWTC 4 cut(s) 493, 706, 820, 1047
Tru1I TTAA 9 cut(s) 110, 132, 207, 380, 528, 540, 698, 803, 842
Tru9I TTAA 9 cut(s) 110, 132, 207, 380, 528, 540, 698, 803, 842
TseI GCWGC 1 cut(s) 691
TspDTI ATGAA 7 cut(s) 128, 225, 485, 600, 698, 783, 921
TspGWI ACGGA 1 cut(s) 404
VneI GTGCAC 2 cut(s) 366, 659
VpaK11BI GGWCC 1 cut(s) 315
VspI ATTAAT 2 cut(s) 110, 540
XbaI TCTAGA 1 cut(s) 353
XmiI GTMKAC 2 cut(s) 200, 1030
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 2 cut(s) 354, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.