Rmu_sc0004622.1_g000005

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004622.1
OG0000143
Physical Location & Seq
Forward (+)
27212 .. 28591
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004622.1_g000005.1.cds

Sequence Viewer

Length: 1380 bp
atgattgatgtttctgatgaattcctctcattatcgacgaaattttttgaaaatcgagaagaccttgtcagtgctattcgtaagattaggttgctgcaagggtatgttatggtaatcaaaagatctaaaaccaatagatatgtggctgttggttgtgatagcggtggttgttatcgaacctgctctgcacttgaggagaagaaaaagaattcaacttctcgtcggatagattgccctttcaaaattctgagaagaaggacagctgaagggttgtggaaggtcgagataagtagcttgttacataaccatgagccttccactaacatggctggacatccatattgccatcggtttactacagaggaagccttacaagttgaacaaatgagtcgggctggcataaaaccacgtcaaattctctcttcacttcgacaaagtaatcctaatcttctagctgtttcgagaaatatatatagcaagacagctcagtttaggagggagagtctaggtgggcgtttaattattcaagcattattagatgagcttggtggtgctggtttttctcataatgtcaaatatgatcactctgatcatttgactcacctattctttgctcatcccacttccattgagttgactaaaagctactttaatatctttgtgatggattgtacttataagacaaataagtacaagatgccattatttgagattgtaggagtgtcgagcttcaacacatcattctattcatgttttgttttcatgcaaaaagaggaacaacaggattatcagtgggctcttgaaatatttagtaagttgttgggagatggtaatcatccattggcaattataattgatagggagttggcattaatgaaagcaatagaagttgtgtttccgatgactccaaatcttttatgcatatggcatattgaaaaaaatattcttgcacattgtaagggtcagtttaaggaagatgcagattgggttggttttatgtcttcttggagttctcttgtaaagtcttgggacgtgtcaatgtttaatgaagcttggaaccgttttcaaattgagtacaaagattatgcttccgttctgacttacattggcaatacttggcttccatggaaagagagatttgtatttggatggaccggacagatttcacactttggtaataatgttacttctagagcagaaggtgtacatggaaccttaaagaaatatcttcaagtttctactagtggtctccgtgaagtgaaggacaatatttgtcttgaattgctatttaaaatcagtttcaagaaattagaactcaacttgcaagttaaaagattcgtgttcctcaaaacctttgcatccctttctttaaagaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

459

Amino Acids

53.08

Weight (kDa)

9.21

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 678, 851
Acc36I ACCTGC 1 cut(s) 188
AciI CCGC 1 cut(s) 162
AcsI RAATTY 5 cut(s) 20, 41, 208, 243, 414
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 4 cut(s) 673, 692, 1076, 1206
AflIII ACRYGT 1 cut(s) 1032
AhlI ACTAGT 1 cut(s) 1241
AjiI CACGTC 2 cut(s) 410, 1033
AluBI AGCT 8 cut(s) 263, 294, 455, 485, 544, 645, 729, 1052
AluI AGCT 8 cut(s) 263, 294, 455, 485, 544, 645, 729, 1052
Alw26I GTCTC 1 cut(s) 1253
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 5 cut(s) 20, 41, 208, 243, 414
AseI ATTAAT 1 cut(s) 872
AspS9I GGNCC 1 cut(s) 1152
AsuHPI GGTGA 1 cut(s) 593
AvaII GGWCC 1 cut(s) 1152
BanII GRGCYC 1 cut(s) 799
BbsI GAAGAC 2 cut(s) 66, 993
BbvI GCAGC 1 cut(s) 81
BccI CCATC 4 cut(s) 354, 658, 821, 1143
BclI TGATCA 2 cut(s) 580, 589
BcoDI GTCTC 1 cut(s) 1253
BcuI ACTAGT 1 cut(s) 1241
BfaI CTAG 4 cut(s) 452, 506, 1191, 1242
BfmI CTRYAG 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 188
BglII AGATCT 1 cut(s) 122
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 1152
BmgBI CACGTC 2 cut(s) 410, 1033
BmgT120I GGNCC 1 cut(s) 1152
BmiI GGNNCC 2 cut(s) 1058, 1213
BmsI GCATC 3 cut(s) 687, 967, 1367
BpiI GAAGAC 2 cut(s) 66, 993
BpuEI CTTGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 1253
BsaJI CCNNGG 1 cut(s) 1124
BsaWI WCCGGW 1 cut(s) 1154
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse8I GATNNNNATC 1 cut(s) 831
BseDI CCNNGG 1 cut(s) 1124
BseGI GGATG 5 cut(s) 334, 616, 835, 1154, 1358
BseJI GATNNNNATC 1 cut(s) 831
BseMII CTCAG 2 cut(s) 239, 500
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 171
BsiSI CCGG 1 cut(s) 1155
BslFI GGGAC 1 cut(s) 1043
BsmAI GTCTC 1 cut(s) 1253
BsmFI GGGAC 1 cut(s) 1043
Bso31I GGTCTC 1 cut(s) 1253
Bsp1286I GDGCHC 1 cut(s) 799
Bsp1407I TGTACA 1 cut(s) 1204
Bsp143I GATC 3 cut(s) 122, 580, 589
Bsp19I CCATGG 1 cut(s) 1124
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 2 cut(s) 240, 499
BspLI GGNNCC 2 cut(s) 1058, 1213
BspMI ACCTGC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 1253
BsrGI TGTACA 1 cut(s) 1204
BssECI CCNNGG 1 cut(s) 1124
BssMI GATC 3 cut(s) 122, 580, 589
BssT1I CCWWGG 1 cut(s) 1124
Bst4CI ACNGT 1 cut(s) 1061
Bst6I CTCTTC 1 cut(s) 427
BstAUI TGTACA 1 cut(s) 1204
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 248, 486
BstDSI CCRYGG 1 cut(s) 1124
BstF5I GGATG 5 cut(s) 334, 616, 835, 1154, 1358
BstKTI GATC 3 cut(s) 125, 583, 592
BstMAI GTCTC 1 cut(s) 1253
BstMBI GATC 3 cut(s) 122, 580, 589
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 2 cut(s) 66, 993
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 1124
BtrI CACGTC 2 cut(s) 410, 1033
BtsCI GGATG 5 cut(s) 334, 616, 835, 1154, 1358
BtsIMutI CAGTG 2 cut(s) 76, 797
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 1152
Csp6I GTAC 4 cut(s) 672, 691, 1075, 1205
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 6 cut(s) 308, 325, 750, 763, 1125, 1208
CviQI GTAC 4 cut(s) 672, 691, 1075, 1205
DdeI CTNAG 2 cut(s) 248, 486
DpnI GATC 3 cut(s) 124, 582, 591
DpnII GATC 3 cut(s) 122, 580, 589
DraI TTTAAA 2 cut(s) 1291, 1371
Eam1104I CTCTTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 1124
Eco24I GRGCYC 1 cut(s) 799
Eco31I GGTCTC 1 cut(s) 1253
Eco47I GGWCC 1 cut(s) 1152
Eco57I CTGAAG 1 cut(s) 285
EcoRI GAATTC 2 cut(s) 20, 208
EcoT14I CCWWGG 1 cut(s) 1124
EcoT22I ATGCAT 1 cut(s) 923
EcoT38I GRGCYC 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 1124
FaeI CATG 6 cut(s) 311, 328, 753, 766, 1128, 1211
FaqI GGGAC 1 cut(s) 1043
FatI CATG 6 cut(s) 307, 324, 749, 762, 1124, 1207
FauNDI CATATG 1 cut(s) 923
FbaI TGATCA 2 cut(s) 580, 589
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 5 cut(s) 321, 603, 822, 1161, 1345
FriOI GRGCYC 1 cut(s) 799
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 4 cut(s) 452, 506, 1191, 1242
GluI GCNGC 1 cut(s) 95
HapII CCGG 1 cut(s) 1155
Hin1II CATG 6 cut(s) 311, 328, 753, 766, 1128, 1211
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HindIII AAGCTT 1 cut(s) 1050
HinfI GANTC 5 cut(s) 388, 502, 598, 904, 1335
HpaII CCGG 1 cut(s) 1155
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 3 cut(s) 354, 636, 1205
Hpy188I TCNGA 6 cut(s) 16, 225, 249, 589, 900, 1098
Hpy188III TCNNGA 7 cut(s) 56, 283, 462, 800, 1191, 1277, 1303
Hpy8I GTNNAC 3 cut(s) 354, 636, 1205
Hpy99I CGWCG 2 cut(s) 40, 225
HpyAV CCTTC 6 cut(s) 249, 260, 271, 324, 1193, 1255
HpyCH4III ACNGT 1 cut(s) 1061
HpyCH4IV ACGT 2 cut(s) 409, 1032
HpyCH4V TGCA 8 cut(s) 97, 188, 766, 921, 950, 980, 1324, 1358
HpyF3I CTNAG 2 cut(s) 248, 486
HpySE526I ACGT 2 cut(s) 409, 1032
Hsp92II CATG 6 cut(s) 311, 328, 753, 766, 1128, 1211
Ksp22I TGATCA 2 cut(s) 580, 589
Kzo9I GATC 3 cut(s) 122, 580, 589
LpnPI CCDG 6 cut(s) 193, 315, 381, 540, 767, 1168
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 3 cut(s) 687, 967, 1367
MaeI CTAG 4 cut(s) 452, 506, 1191, 1242
MaeII ACGT 2 cut(s) 409, 1032
MaeIII GTNAC 2 cut(s) 297, 1183
MalI GATC 3 cut(s) 124, 582, 591
MboI GATC 3 cut(s) 122, 580, 589
MboII GAAGA 8 cut(s) 71, 211, 264, 414, 440, 986, 993, 1220
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 799
MlyI GAGTC 4 cut(s) 397, 511, 592, 898
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 7 cut(s) 35, 187, 355, 489, 766, 1355, 1368
Mph1103I ATGCAT 1 cut(s) 923
MseI TTAA 9 cut(s) 518, 651, 872, 969, 1044, 1217, 1290, 1329, 1370
MslI CAYNNNNRTG 2 cut(s) 306, 323
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 1155
NcoI CCATGG 1 cut(s) 1124
NdeI CATATG 1 cut(s) 923
NdeII GATC 3 cut(s) 122, 580, 589
NlaIII CATG 6 cut(s) 311, 328, 753, 766, 1128, 1211
NlaIV GGNNCC 2 cut(s) 1058, 1213
NsiI ATGCAT 1 cut(s) 923
PfeI GAWTC 1 cut(s) 1335
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 4 cut(s) 396, 510, 592, 898
PpsI GAGTC 4 cut(s) 396, 510, 592, 898
PshBI ATTAAT 1 cut(s) 872
PsiI TTATAA 2 cut(s) 678, 851
PspN4I GGNNCC 2 cut(s) 1058, 1213
PspPI GGNCC 1 cut(s) 1152
PsuI RGATCY 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 4 cut(s) 673, 692, 1076, 1206
RsaNI GTAC 4 cut(s) 672, 691, 1075, 1205
RseI CAYNNNNRTG 2 cut(s) 306, 323
SaqAI TTAA 9 cut(s) 518, 651, 872, 969, 1044, 1217, 1290, 1329, 1370
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 3 cut(s) 122, 580, 589
Sau96I GGNCC 1 cut(s) 1152
SchI GAGTC 4 cut(s) 397, 511, 592, 898
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 3 cut(s) 687, 967, 1367
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 1152
SmiMI CAYNNNNRTG 2 cut(s) 306, 323
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SpeI ACTAGT 1 cut(s) 1241
SsiI CCGC 1 cut(s) 162
SspI AATATT 3 cut(s) 807, 943, 1270
SspMI CTAG 4 cut(s) 452, 506, 1191, 1242
StyI CCWWGG 1 cut(s) 1124
TaaI ACNGT 1 cut(s) 1061
TaiI ACGT 2 cut(s) 412, 1035
TaqI TCGA 7 cut(s) 35, 55, 175, 282, 430, 461, 725
TatI WGTACW 4 cut(s) 671, 690, 1074, 1204
TfiI GAWTC 1 cut(s) 1335
Tru1I TTAA 9 cut(s) 518, 651, 872, 969, 1044, 1217, 1290, 1329, 1370
Tru9I TTAA 9 cut(s) 518, 651, 872, 969, 1044, 1217, 1290, 1329, 1370
TscAI CASTG 2 cut(s) 76, 797
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 5 cut(s) 33, 738, 751, 890, 1062
TspGWI ACGGA 2 cut(s) 1081, 1241
TspRI CASTG 2 cut(s) 76, 797
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 1152
VspI ATTAAT 1 cut(s) 872
XapI RAATTY 5 cut(s) 20, 41, 208, 243, 414
XbaI TCTAGA 1 cut(s) 1190
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 4 cut(s) 452, 506, 1191, 1242
Zsp2I ATGCAT 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.