Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000143

Physical Location & Seq

Genomic Coordinates Forward (+)

12320775 .. 12324767

Gene Structure 3993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG079100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCTTAGGATGGAGGATACATACTTGTGGGAAGATGACGATGAAAGGTATTCAGTTGAGAAAATTCCGCTTTATGATTCGGCAGAGGATGAGCCTTCTTCTATGCTCTTCAAGACTGTCAACTCAAATTCTGAATTTGATGTAAAAGGTATGATGATCAATGTCAATGCTGATTCTGGACATCAGTTGATGTCCACTGCTCTAGTCGTCCAATCACTTGATTCAGATCCAATGGAGGGTGTAGTTATGGAGGTAAAAAGTGAAGCGAGTGAGGAGACGAAACTTTATTCACGAGGTAATCAACCGGCTTTCTTAAAAAAGAATGCAATGATATCTCGAATCCGTAGCAATACTGCGTGTCGAAACTATCACATTGGATCAGGATCAATTTCAAACAAGAGATCGAAACAAGGGTCTAGTGGAAAGTTGAAACATTATGCACAAAAGCAAGTCGATGCCAAATCTGTAGCTTTGCTTTTAGCATCAAATGAGGCACAAGATGAAATTTTGAAACATGAGGAGATGAGAAGTGATGCTGCCACTCATCTTGAATCTTTATACAATGAGATACGACCTGCCATTGAAGAACATGAAGGGGACAGCCAAGACAGTGTAGCAACCAGTGTAGCTGAGAAGTGGATAGAAGCCTGCTGCTTGAAACTGAAGACGGAATTCGACCTTTATTCCTCTATTGTTAAACAAGTTGCTTGTACCCCTCGAAAGGCAAGTGGCCAATCCAAATCTGCCGATAACAACATAGAGAATGAAATCAAGTTGCTCCCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

262

Amino Acids

29.25

Weight (kDa)

5.06

Isoelectric Point (pI)

63.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca	FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica	MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica	Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis	pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis	RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata	RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora	Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa	Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha	Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana	Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	583
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	3 cut(s)	221, 385, 391
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	5 cut(s)	63, 127, 134, 504, 671
AcuI	CTGAAG	1 cut(s)	683
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	2 cut(s)	236, 721
AgsI	TTSAA	7 cut(s)	112, 393, 430, 511, 551, 584, 658
AluBI	AGCT	2 cut(s)	470, 629
AluI	AGCT	2 cut(s)	470, 629
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	3 cut(s)	221, 385, 391
AoxI	GGCC	1 cut(s)	730
ApeKI	GCWGC	2 cut(s)	536, 651
ApoI	RAATTY	5 cut(s)	63, 127, 134, 504, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
BalI	TGGCCA	1 cut(s)	732
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	671
BbvI	GCAGC	2 cut(s)	523, 638
BccI	CCATC	1 cut(s)	4
BciVI	GTATCC	1 cut(s)	10
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	203, 417
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	537, 652
BlsI	GCNGC	2 cut(s)	538, 653
BmsI	GCATC	3 cut(s)	445, 491, 523
BpiI	GAAGAC	1 cut(s)	671
Bpu10I	CCTNAGC	1 cut(s)	5
BsaBI	GATNNNNATC	2 cut(s)	225, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 721
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	2 cut(s)	225, 382
BseGI	GGATG	2 cut(s)	15, 94
BseJI	GATNNNNATC	2 cut(s)	225, 382
BseLI	CCNNNNNNNGG	2 cut(s)	236, 721
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	2 cut(s)	287, 533
BseXI	GCAGC	2 cut(s)	523, 638
BshFI	GGCC	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	236, 721
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	732
Bsp143I	GATC	5 cut(s)	156, 226, 377, 383, 401
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	3 cut(s)	221, 385, 391
BspQI	GCTCTTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	304
BssMI	GATC	5 cut(s)	156, 226, 377, 383, 401
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	118, 611
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	2 cut(s)	5, 630
BstF5I	GGATG	2 cut(s)	15, 94
BstKTI	GATC	5 cut(s)	159, 229, 380, 386, 404
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	5 cut(s)	156, 226, 377, 383, 401
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	523, 638
BstV2I	GAAGAC	1 cut(s)	671
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	732
BtsCI	GGATG	2 cut(s)	15, 94
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 616, 628
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	711
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	2 cut(s)	515, 590
CviJI	RGCY	7 cut(s)	94, 308, 470, 603, 629, 647, 732
CviKI_1	RGCY	7 cut(s)	94, 308, 470, 603, 629, 647, 732
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	2 cut(s)	5, 630
DpnI	GATC	5 cut(s)	158, 228, 379, 385, 403
DpnII	GATC	5 cut(s)	156, 226, 377, 383, 401
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	683
EcoRI	GAATTC	1 cut(s)	671
EcoRV	GATATC	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	2 cut(s)	518, 593
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	2 cut(s)	514, 589
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	537, 652
FokI	GGATG	2 cut(s)	22, 101
Fsp4HI	GCNGC	2 cut(s)	537, 652
FspBI	CTAG	2 cut(s)	203, 417
GluI	GCNGC	2 cut(s)	537, 652
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	2 cut(s)	518, 593
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	5 cut(s)	77, 173, 221, 339, 551
HpaII	CCGG	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	121, 195
Hpy188I	TCNGA	2 cut(s)	133, 226
Hpy188III	TCNNGA	6 cut(s)	112, 177, 291, 336, 381, 548
Hpy8I	GTNNAC	2 cut(s)	121, 195
HpyAV	CCTTC	2 cut(s)	105, 587
HpyCH4III	ACNGT	2 cut(s)	118, 611
HpyCH4V	TGCA	2 cut(s)	326, 440
HpyF3I	CTNAG	2 cut(s)	5, 630
Hsp92II	CATG	2 cut(s)	518, 593
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	156, 226, 377, 383, 401
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	783
LpnPI	CCDG	6 cut(s)	162, 318, 366, 588, 634, 661
Lsp1109I	GCAGC	2 cut(s)	523, 638
LweI	GCATC	3 cut(s)	445, 491, 523
MaeI	CTAG	2 cut(s)	203, 417
MalI	GATC	5 cut(s)	158, 228, 379, 385, 403
MboI	GATC	5 cut(s)	156, 226, 377, 383, 401
MboII	GAAGA	5 cut(s)	44, 90, 100, 596, 676
MflI	RGATCY	1 cut(s)	226
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	7 cut(s)	63, 127, 134, 387, 504, 671, 784
MluNI	TGGCCA	1 cut(s)	732
Mox20I	TGGCCA	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	2 cut(s)	314, 696
MslI	CAYNNNNRTG	1 cut(s)	25
Msp20I	TGGCCA	1 cut(s)	732
MspI	CCGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	328
NdeII	GATC	5 cut(s)	156, 226, 377, 383, 401
NlaIII	CATG	2 cut(s)	518, 593
PciSI	GCTCTTC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	5 cut(s)	77, 173, 221, 339, 551
PkrI	GCNGC	2 cut(s)	538, 653
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	1 cut(s)	25
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	314, 696
SatI	GCNGC	2 cut(s)	537, 652
Sau3AI	GATC	5 cut(s)	156, 226, 377, 383, 401
SetI	ASST	8 cut(s)	50, 151, 255, 298, 472, 577, 631, 681
SfaNI	GCATC	3 cut(s)	445, 491, 523
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	7 cut(s)	63, 127, 134, 387, 504, 671, 784
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	203, 417
TaaI	ACNGT	2 cut(s)	118, 611
TaqI	TCGA	6 cut(s)	337, 361, 404, 453, 675, 718
TasI	AATT	7 cut(s)	63, 127, 134, 387, 504, 671, 784
TfiI	GAWTC	5 cut(s)	77, 173, 221, 339, 551
Tru1I	TTAA	2 cut(s)	314, 696
Tru9I	TTAA	2 cut(s)	314, 696
TscAI	CASTG	3 cut(s)	202, 616, 628
TseI	GCWGC	2 cut(s)	536, 651
TspDTI	ATGAA	4 cut(s)	57, 516, 606, 780
TspGWI	ACGGA	2 cut(s)	332, 683
TspRI	CASTG	3 cut(s)	202, 616, 628
XapI	RAATTY	5 cut(s)	63, 127, 134, 504, 671
XspI	CTAG	2 cut(s)	203, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.