Rw5G048780

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000143
Physical Location & Seq
Forward (+)
84772566 .. 84773958
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048780.1

Sequence Viewer

Length: 1101 bp
ATGGTATATAGGGTTGATGCAGTTGGAGTTAATGTTGTATCATGTGGTTGTGCCATTCGCCGCACGCACCAATTACCATGTGCACATGAGATTGCCGAATATCGAAATTCCCATCAGCCTATCCCAATTGATGCTATCCATTCTCATTGGAGACGGTTAAGTGTAGGTAATTTTGTGGAGGAAATTGATCCCCAAGAAAAAGTTATGAACGTACAAGATGATGAAACCAAGAGACAAGTTTTGCTGAAGATTGACGAGCTTATAAATCCAAGTTGCACAATGCTTCAAGAACCAAATGAGAAGATTAAAACCAAAGGGCGTCCTTCTAAGATTGACAGTAGCACTCGTCGTCTACCATCTGCTTTTGAGATTGCCGAGGCTTTTTCCGTACATGGTAGTCAGTCACAAGTACCACTTGAAAAGGTTGTTCATGCATCTCCTAGTACTGTGTTGCCTTCTACGAAATCAAATAAGCATCCAGAGAAAAATCAGGTGCCTTACATTCTAGGTTCATTTGATGTTGAGTCTGATGGTAATTGTGGTTACAAAGTTGTAGCATCAGCTATGGGATTTGGTAGGTGTTTTTGGCGAAGAGTTCGAATAGACCTAATGAATGAGCTAAAAAGTATGCCCCACTTGTACATGAAACTATATGGTAGCGAAAGTAGTGTAGAGAATATCATACAGAGACTAAACCATTCTGGATCTACTGCACCACGTAGAAAATGGATGTGTATAACAGAGACGGGGCATTTGATCGCTACTTGCTATGGAGTTGTGATAAAATTATCTGATAAACAGTGCCTTACCTTTCTTCCTTTGACTGAACACATTACTGGACGATTTCAAAACCAAGAACTGCCTGAAATTGGAATTGGTTTTGTTAATGGAGACCACTTTGTGCAAGTGTCTTTGCAAGCGGGATGCCCATTACCACCAATCCCACCAAATTGGTACCCCCATGCTGATGATAAAGCAAGATCATTATACAATAGATACAAGGATCGTCTGCATCAATATACCCAAATACCCCATCCAGAAAGAGTTACTGCTATTTCCGAAATTACAACTCTTGAGACTGATGAGACTATGTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

366

Amino Acids

41.47

Weight (kDa)

6.97

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
Acc65I GGTACC 1 cut(s) 954
AccB1I GGYRCC 2 cut(s) 493, 954
AccI GTMKAC 1 cut(s) 352
AciI CCGC 2 cut(s) 61, 920
AclWI GGATC 3 cut(s) 182, 712, 1011
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 319
AdeI CACNNNGTG 1 cut(s) 901
AfaI GTAC 6 cut(s) 213, 390, 411, 445, 641, 956
AfiI CCNNNNNNNGG 1 cut(s) 869
AgsI TTSAA 4 cut(s) 287, 419, 848, 1097
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AluBI AGCT 3 cut(s) 259, 563, 619
AluI AGCT 3 cut(s) 259, 563, 619
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 7 cut(s) 145, 226, 682, 737, 885, 1070, 1079
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 3 cut(s) 182, 712, 1011
ApaLI GTGCAC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 106
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
Asp718I GGTACC 1 cut(s) 954
AsuII TTCGAA 1 cut(s) 598
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 2 cut(s) 493, 954
Bbv12I GWGCWC 1 cut(s) 85
BccI CCATC 4 cut(s) 120, 364, 524, 1041
BcoDI GTCTC 7 cut(s) 145, 226, 682, 737, 885, 1070, 1079
BfaI CTAG 2 cut(s) 441, 506
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 495, 956
BmsI GCATC 7 cut(s) 7, 121, 443, 484, 566, 914, 1021
Bpu14I TTCGAA 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 1094
BsaAI YACGTR 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 885
BsaJI CCNNGG 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 869
Bse1I ACTGG 1 cut(s) 841
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 4 cut(s) 475, 735, 929, 1033
BseLI CCNNNNNNNGG 1 cut(s) 869
BseNI ACTGG 1 cut(s) 841
BseSI GKGCMC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 696
BshNI GGYRCC 2 cut(s) 493, 954
BsiHKAI GWGCWC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 869
BsmAI GTCTC 7 cut(s) 145, 226, 682, 737, 885, 1070, 1079
BsmBI CGTCTC 2 cut(s) 145, 737
Bso31I GGTCTC 1 cut(s) 885
Bsp119I TTCGAA 1 cut(s) 598
Bsp1286I GDGCHC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 5 cut(s) 187, 704, 756, 980, 1003
BspACI CCGC 2 cut(s) 61, 920
BspLI GGNNCC 2 cut(s) 495, 956
BspPI GGATC 3 cut(s) 182, 712, 1011
BspT104I TTCGAA 1 cut(s) 598
BspT107I GGYRCC 2 cut(s) 493, 954
BspTNI GGTCTC 1 cut(s) 885
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 1 cut(s) 841
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 5 cut(s) 187, 704, 756, 980, 1003
BssNI GRCGYC 1 cut(s) 319
Bst4CI ACNGT 4 cut(s) 156, 338, 448, 801
Bst6I CTCTTC 1 cut(s) 586
BstACI GRCGYC 1 cut(s) 319
BstAUI TGTACA 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 719
BstBI TTCGAA 1 cut(s) 598
BstC8I GCNNGC 2 cut(s) 65, 918
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 4 cut(s) 475, 735, 929, 1033
BstKTI GATC 5 cut(s) 190, 707, 759, 983, 1006
BstMAI GTCTC 7 cut(s) 145, 226, 682, 737, 885, 1070, 1079
BstMBI GATC 5 cut(s) 187, 704, 756, 980, 1003
BstSLI GKGCMC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 704
BstXI CCANNNNNNTGG 1 cut(s) 951
BstYI RGATCY 1 cut(s) 704
BtsCI GGATG 4 cut(s) 475, 735, 929, 1033
BtsIMutI CAGTG 1 cut(s) 806
Cac8I GCNNGC 2 cut(s) 65, 918
CseI GACGC 1 cut(s) 308
Csp6I GTAC 6 cut(s) 212, 389, 410, 444, 640, 955
CviAII CATG 7 cut(s) 42, 78, 86, 392, 431, 643, 962
CviJI RGCY 5 cut(s) 118, 259, 380, 563, 619
CviKI_1 RGCY 5 cut(s) 118, 259, 380, 563, 619
CviQI GTAC 6 cut(s) 212, 389, 410, 444, 640, 955
DdeI CTNAG 1 cut(s) 327
DpnI GATC 5 cut(s) 189, 706, 758, 982, 1005
DpnII GATC 5 cut(s) 187, 704, 756, 980, 1003
DraIII CACNNNGTG 1 cut(s) 901
Eam1104I CTCTTC 1 cut(s) 586
EarI CTCTTC 1 cut(s) 586
Eco31I GGTCTC 1 cut(s) 885
Eco57I CTGAAG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 436
Esp3I CGTCTC 2 cut(s) 145, 737
FaeI CATG 7 cut(s) 45, 81, 89, 395, 434, 646, 965
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 7 cut(s) 41, 77, 85, 391, 430, 642, 961
FauI CCCGC 1 cut(s) 913
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 4 cut(s) 462, 742, 936, 1020
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 441, 506
GluI GCNGC 1 cut(s) 61
HgaI GACGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 7 cut(s) 45, 81, 89, 395, 434, 646, 965
HinfI GANTC 1 cut(s) 524
Hpy166II GTNNAC 2 cut(s) 83, 353
Hpy188I TCNGA 3 cut(s) 529, 793, 1060
Hpy188III TCNNGA 5 cut(s) 287, 479, 702, 1037, 1073
Hpy8I GTNNAC 2 cut(s) 83, 353
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 333, 465
HpyCH4III ACNGT 4 cut(s) 156, 338, 448, 801
HpyCH4IV ACGT 2 cut(s) 210, 718
HpyCH4V TGCA 8 cut(s) 20, 83, 276, 434, 713, 904, 916, 1012
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 2 cut(s) 210, 718
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 7 cut(s) 45, 81, 89, 395, 434, 646, 965
KpnI GGTACC 1 cut(s) 958
Kzo9I GATC 5 cut(s) 187, 704, 756, 980, 1003
LpnPI CCDG 6 cut(s) 476, 492, 687, 822, 876, 1050
LweI GCATC 7 cut(s) 7, 121, 443, 484, 566, 914, 1021
MaeI CTAG 2 cut(s) 441, 506
MaeII ACGT 2 cut(s) 210, 718
MaeIII GTNAC 3 cut(s) 402, 542, 1045
MalI GATC 5 cut(s) 189, 706, 758, 982, 1005
MboI GATC 5 cut(s) 187, 704, 756, 980, 1003
MboII GAAGA 4 cut(s) 259, 313, 603, 806
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 704
MhlI GDGCHC 1 cut(s) 85
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 2 cut(s) 172, 370
Mph1103I ATGCAT 1 cut(s) 436
MseI TTAA 4 cut(s) 30, 158, 306, 885
MslI CAYNNNNRTG 1 cut(s) 966
MunI CAATTG 1 cut(s) 126
NdeII GATC 5 cut(s) 187, 704, 756, 980, 1003
NlaIII CATG 7 cut(s) 45, 81, 89, 395, 434, 646, 965
NlaIV GGNNCC 2 cut(s) 495, 956
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 402
NsiI ATGCAT 1 cut(s) 436
NspV TTCGAA 1 cut(s) 598
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 719
PsiI TTATAA 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 495, 956
PsuI RGATCY 1 cut(s) 704
RsaI GTAC 6 cut(s) 213, 390, 411, 445, 641, 956
RsaNI GTAC 6 cut(s) 212, 389, 410, 444, 640, 955
RseI CAYNNNNRTG 1 cut(s) 966
SaqAI TTAA 4 cut(s) 30, 158, 306, 885
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 5 cut(s) 187, 704, 756, 980, 1003
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 1 cut(s) 533
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 7 cut(s) 7, 121, 443, 484, 566, 914, 1021
SfuI TTCGAA 1 cut(s) 598
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 1 cut(s) 1073
SmoI CTYRAG 1 cut(s) 1073
SsiI CCGC 2 cut(s) 61, 920
SspMI CTAG 2 cut(s) 441, 506
TaaI ACNGT 4 cut(s) 156, 338, 448, 801
TaiI ACGT 2 cut(s) 213, 721
TaqI TCGA 2 cut(s) 103, 598
TatI WGTACW 2 cut(s) 443, 639
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 4 cut(s) 30, 158, 306, 885
Tru9I TTAA 4 cut(s) 30, 158, 306, 885
TscAI CASTG 1 cut(s) 806
TseFI GTSAC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 6 cut(s) 221, 237, 419, 501, 626, 659
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 806
VneI GTGCAC 1 cut(s) 81
XapI RAATTY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 723
XmiI GTMKAC 1 cut(s) 352
XspI CTAG 2 cut(s) 441, 506
ZrmI AGTACT 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.