Rroxscaffold_175G00432280

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000175
OG0000143
Physical Location & Seq
Forward (+)
784715 .. 786105
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_175G00432280.1

Sequence Viewer

Length: 723 bp
ATGGAATATAGGGTTGATGCAGTTGGAGTTAATGTTGTATCATGTGGTTGTGCCATTCGCCGCACGCACCAATTACCATGTGCACATGAGATTGCTGAATATCGAAATTCCCATCGGCCTATCCCAATTGATGCTATCCATTCTCATTGGAGATGGTTAAGTGTAGGTAATTTTGTGGAGGAAATTGATCCCCAAGAAAAAGTTATGGTAAGACCACGTTTGACACAATTACAAAAATGGTTGGAAGAACAAGATAATGAAACCAAGAGACAAGTTTTGCTCAAGATTGATGAGCTTATAAATCCAAGTTGCACAATGCTTCAAGAACCAAATGAGAAGATTAAAACCAAAGGGCGTCCTTCTAAGATTGACAGTAGTACTCGTCATCTACCATATGCTTTTGAGATTGCCGATGCTTTTTCCGTACATGGAAGCCAGTCACAAGTACCACCTGAAAAGGTTGTTAATACATCTCCTAGTACTGTGTTGCCTTCTACGAAATCAAATAAGCATCCAGAGAAAAATCAGGTGTCTTTGCAAGCGGGATGCCCATTACCACCAATCCCTCCAAATTGGTACCCCCATGCTGATGATAAAGCAAGATCATTATACAATAGATACAAGGATCGTCTGCATCAATATACCCGTATACCCCATCCAGAAAGAGTTATTGCTATTTCCGAAATTATAACTCTTGAGACTAATGAGACTATGTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

240

Amino Acids

27.61

Weight (kDa)

7.18

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 299, 689
Acc65I GGTACC 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 576
AccI GTMKAC 1 cut(s) 649
AciI CCGC 2 cut(s) 61, 542
AclWI GGATC 2 cut(s) 182, 633
AcsI RAATTY 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 5 cut(s) 379, 426, 447, 481, 578
AgsI TTSAA 2 cut(s) 323, 719
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 3 cut(s) 262, 692, 701
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 2 cut(s) 182, 633
AoxI GGCC 1 cut(s) 116
ApaLI GTGCAC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 106
Asp718I GGTACC 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 85
BccI CCATC 3 cut(s) 120, 147, 663
BcoDI GTCTC 3 cut(s) 262, 692, 701
BfaI CTAG 1 cut(s) 477
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmcAI AGTACT 2 cut(s) 379, 481
BmiI GGNNCC 1 cut(s) 578
BmsI GCATC 6 cut(s) 7, 121, 403, 520, 536, 643
BpuEI CTTGAG 2 cut(s) 266, 716
BsaHI GRCGYC 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bse1I ACTGG 1 cut(s) 436
BseGI GGATG 3 cut(s) 511, 551, 655
BseNI ACTGG 1 cut(s) 436
BseSI GKGCMC 1 cut(s) 85
BshFI GGCC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 85
BsmAI GTCTC 3 cut(s) 262, 692, 701
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 3 cut(s) 187, 602, 625
BspACI CCGC 2 cut(s) 61, 542
BspANI GGCC 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 578
BspPI GGATC 2 cut(s) 182, 633
BspT107I GGYRCC 1 cut(s) 576
BsrI ACTGG 1 cut(s) 436
BssMI GATC 3 cut(s) 187, 602, 625
BssNAI GTATAC 1 cut(s) 650
BssNI GRCGYC 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 650
Bst4CI ACNGT 2 cut(s) 374, 484
BstACI GRCGYC 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 65, 540
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 3 cut(s) 511, 551, 655
BstKTI GATC 3 cut(s) 190, 605, 628
BstMAI GTCTC 3 cut(s) 262, 692, 701
BstMBI GATC 3 cut(s) 187, 602, 625
BstSLI GKGCMC 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 650
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 3 cut(s) 511, 551, 655
Cac8I GCNNGC 2 cut(s) 65, 540
CseI GACGC 1 cut(s) 344
Csp6I GTAC 5 cut(s) 378, 425, 446, 480, 577
CviAII CATG 5 cut(s) 42, 78, 86, 428, 584
CviJI RGCY 3 cut(s) 118, 295, 435
CviKI_1 RGCY 3 cut(s) 118, 295, 435
CviQI GTAC 5 cut(s) 378, 425, 446, 480, 577
DdeI CTNAG 1 cut(s) 363
DpnI GATC 3 cut(s) 189, 604, 627
DpnII GATC 3 cut(s) 187, 602, 625
FaeI CATG 5 cut(s) 45, 81, 89, 431, 587
FatI CATG 5 cut(s) 41, 77, 85, 427, 583
FauI CCCGC 1 cut(s) 535
FauNDI CATATG 1 cut(s) 394
FblI GTMKAC 1 cut(s) 649
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 3 cut(s) 498, 558, 642
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 1 cut(s) 477
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 118
HgaI GACGC 1 cut(s) 344
Hin1I GRCGYC 1 cut(s) 355
Hin1II CATG 5 cut(s) 45, 81, 89, 431, 587
Hpy166II GTNNAC 2 cut(s) 83, 650
Hpy188I TCNGA 1 cut(s) 682
Hpy188III TCNNGA 5 cut(s) 283, 323, 515, 659, 695
Hpy8I GTNNAC 2 cut(s) 83, 650
HpyAV CCTTC 2 cut(s) 369, 501
HpyCH4III ACNGT 2 cut(s) 374, 484
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 5 cut(s) 20, 83, 312, 538, 634
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 1 cut(s) 217
Hsp92I GRCGYC 1 cut(s) 355
Hsp92II CATG 5 cut(s) 45, 81, 89, 431, 587
KpnI GGTACC 1 cut(s) 580
Kzo9I GATC 3 cut(s) 187, 602, 625
LpnPI CCDG 5 cut(s) 449, 465, 512, 528, 672
LweI GCATC 6 cut(s) 7, 121, 403, 520, 536, 643
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 438
MalI GATC 3 cut(s) 189, 604, 627
MboI GATC 3 cut(s) 187, 602, 625
MboII GAAGA 2 cut(s) 257, 349
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 8 cut(s) 71, 106, 126, 169, 183, 227, 571, 684
MmeI TCCRAC 2 cut(s) 4, 222
MnlI CCTC 2 cut(s) 172, 576
MseI TTAA 4 cut(s) 30, 158, 342, 465
MslI CAYNNNNRTG 1 cut(s) 588
MunI CAATTG 1 cut(s) 126
NdeI CATATG 1 cut(s) 394
NdeII GATC 3 cut(s) 187, 602, 625
NlaIII CATG 5 cut(s) 45, 81, 89, 431, 587
NlaIV GGNNCC 1 cut(s) 578
NmuCI GTSAC 1 cut(s) 438
PkrI GCNGC 1 cut(s) 62
PsiI TTATAA 2 cut(s) 299, 689
PspN4I GGNNCC 1 cut(s) 578
RsaI GTAC 5 cut(s) 379, 426, 447, 481, 578
RsaNI GTAC 5 cut(s) 378, 425, 446, 480, 577
RseI CAYNNNNRTG 1 cut(s) 588
SaqAI TTAA 4 cut(s) 30, 158, 342, 465
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 3 cut(s) 187, 602, 625
ScaI AGTACT 2 cut(s) 379, 481
SduI GDGCHC 1 cut(s) 85
SetI ASST 6 cut(s) 169, 220, 297, 454, 462, 531
SfaNI GCATC 6 cut(s) 7, 121, 403, 520, 536, 643
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 2 cut(s) 281, 695
SmoI CTYRAG 2 cut(s) 281, 695
Sse9I AATT 8 cut(s) 71, 106, 126, 169, 183, 227, 571, 684
SsiI CCGC 2 cut(s) 61, 542
SspMI CTAG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 374, 484
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 103
TasI AATT 8 cut(s) 71, 106, 126, 169, 183, 227, 571, 684
TatI WGTACW 2 cut(s) 377, 479
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 4 cut(s) 30, 158, 342, 465
Tru9I TTAA 4 cut(s) 30, 158, 342, 465
TseFI GTSAC 1 cut(s) 438
Tsp45I GTSAC 1 cut(s) 438
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 412
VneI GTGCAC 1 cut(s) 81
XapI RAATTY 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 649
XspI CTAG 1 cut(s) 477
ZrmI AGTACT 2 cut(s) 379, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.