RchiOBHm_Chr1g0341531

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000143
Physical Location & Seq
Forward (+)
33326289 .. 33328884
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56821

Sequence Viewer

Length: 741 bp
ATGTCTTCTTGGACTGCACTAGTAGAGTCTTGGAATGAGTCGACGTTCAATGAAACTTGGAACTATTTTCAGATTGAGTACAAAGACTATGCTTCAGTTTTGACTTACATTGTTAACACTTGGATTCCATGGAAAGAAAGGTTTGTATTTACATGGACGGGACAGACTTCACATTTTGGTAATAATGTTACTTCTAGAGCAGAAGGTGCACATGAAATCTTAAAGAAATATCTTCAAGTTTCTACTGGTGGTCTACGTGAAGTGAAGGACAATATTTGTCTTGCTATTCAAAATCAGTTTCAGGAAATTAAAACTCAACTTGCAAGTGAAAAGATTCGTGTTCCTCAAAAACTTTGCATCCCTTTCTTTAAAGAGGTGATTAATAAGGTATCTTTCTATGCTTTGTTTGAGTTACAAAAGCAATATTTGTTGGCAAATACCAAAGATTATTCATCTCAATGCAAGGGCCAATTTTCCAAAACCATGGGTCTCCCATGTGTGCACATGATTAAGGATATGAACATTGAAGTGTTGCTTATAAATATGATTCATAAGCAATGGAGGATTGACACAAGACCTTTCGGTAATGATCAACATGCAAGCTTGGATCATGAAGATCCATTTAGTAGTCTTGTATTTGAGATTAAAGAGAAGTATGAAAAACAGCCACTTATGCAAAAAGAAAACACCATAAGACAGCTTTCTCAGATTCTTGGTGCATCTTGTACTTTAATTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

246

Amino Acids

28.83

Weight (kDa)

7.64

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AccI GTMKAC 2 cut(s) 41, 253
AclWI GGATC 2 cut(s) 611, 615
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 80, 727
AgsI TTSAA 4 cut(s) 49, 236, 290, 527
AhlI ACTAGT 1 cut(s) 19
AluBI AGCT 2 cut(s) 603, 700
AluI AGCT 2 cut(s) 603, 700
Alw21I GWGCWC 2 cut(s) 211, 504
Alw26I GTCTC 1 cut(s) 494
Alw44I GTGCAC 2 cut(s) 207, 500
AlwI GGATC 2 cut(s) 611, 615
AoxI GGCC 1 cut(s) 466
ApaLI GTGCAC 2 cut(s) 207, 500
AseI ATTAAT 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 466
AsuHPI GGTGA 1 cut(s) 388
BaeGI GKGCMC 2 cut(s) 211, 504
Bbv12I GWGCWC 2 cut(s) 211, 504
BclI TGATCA 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 494
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 2 cut(s) 20, 195
BmgT120I GGNCC 1 cut(s) 466
BmsI GCATC 2 cut(s) 366, 728
BsaAI YACGTR 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 128, 483
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 563
BseDI CCNNGG 2 cut(s) 128, 483
BseGI GGATG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 1 cut(s) 719
BseNI ACTGG 1 cut(s) 250
BseSI GKGCMC 2 cut(s) 211, 504
BshFI GGCC 1 cut(s) 468
BsiHKAI GWGCWC 2 cut(s) 211, 504
BslFI GGGAC 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 468
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 211, 504
Bsp143I GATC 3 cut(s) 589, 607, 616
Bsp19I CCATGG 2 cut(s) 128, 483
BspANI GGCC 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 718
BspHI TCATGA 1 cut(s) 610
BspPI GGATC 2 cut(s) 611, 615
BspTNI GGTCTC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 563
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 128, 483
BssMI GATC 3 cut(s) 589, 607, 616
BssT1I CCWWGG 2 cut(s) 128, 483
BstAPI GCANNNNNTGC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 1 cut(s) 705
BstDSI CCRYGG 2 cut(s) 128, 483
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 3 cut(s) 592, 610, 619
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 3 cut(s) 589, 607, 616
BstMWI GCNNNNNNNGC 2 cut(s) 206, 673
BstNSI RCATGY 1 cut(s) 599
BstSLI GKGCMC 2 cut(s) 211, 504
BstX2I RGATCY 1 cut(s) 616
BstXI CCANNNNNNTGG 1 cut(s) 484
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 1 cut(s) 468
BtgI CCRYGG 2 cut(s) 128, 483
BtsCI GGATG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 601
CciI TCATGA 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 466
Csp6I GTAC 2 cut(s) 79, 726
CviAII CATG 8 cut(s) 129, 153, 212, 484, 495, 505, 596, 611
CviJI RGCY 4 cut(s) 468, 603, 667, 700
CviKI_1 RGCY 4 cut(s) 468, 603, 667, 700
CviQI GTAC 2 cut(s) 79, 726
DdeI CTNAG 1 cut(s) 705
DpnI GATC 3 cut(s) 591, 609, 618
DpnII GATC 3 cut(s) 589, 607, 616
DraI TTTAAA 1 cut(s) 370
Eco130I CCWWGG 2 cut(s) 128, 483
Eco31I GGTCTC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 128, 483
ErhI CCWWGG 2 cut(s) 128, 483
FaeI CATG 8 cut(s) 132, 156, 215, 487, 498, 508, 599, 614
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 174
FatI CATG 8 cut(s) 128, 152, 211, 483, 494, 504, 595, 610
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 2 cut(s) 41, 253
FokI GGATG 1 cut(s) 344
FspBI CTAG 2 cut(s) 20, 195
HaeIII GGCC 1 cut(s) 468
Hin1II CATG 8 cut(s) 132, 156, 215, 487, 498, 508, 599, 614
HincII GTYRAC 2 cut(s) 42, 115
HindII GTYRAC 2 cut(s) 42, 115
HindIII AAGCTT 1 cut(s) 601
HinfI GANTC 6 cut(s) 26, 38, 124, 334, 547, 709
HpaI GTTAAC 1 cut(s) 115
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 5 cut(s) 42, 115, 209, 254, 502
Hpy188I TCNGA 2 cut(s) 72, 708
Hpy188III TCNNGA 3 cut(s) 195, 302, 611
Hpy8I GTNNAC 5 cut(s) 42, 115, 209, 254, 502
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 197, 259
HpyCH4IV ACGT 2 cut(s) 44, 256
HpyCH4V TGCA 9 cut(s) 17, 209, 323, 357, 462, 502, 599, 676, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 673
HpyF3I CTNAG 1 cut(s) 705
HpySE526I ACGT 2 cut(s) 44, 256
Hsp92II CATG 8 cut(s) 132, 156, 215, 487, 498, 508, 599, 614
Ksp22I TGATCA 1 cut(s) 589
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 589, 607, 616
LpnPI CCDG 2 cut(s) 231, 287
LweI GCATC 2 cut(s) 366, 728
MaeI CTAG 2 cut(s) 20, 195
MaeII ACGT 2 cut(s) 44, 256
MaeIII GTNAC 2 cut(s) 187, 411
MalI GATC 3 cut(s) 591, 609, 618
MboI GATC 3 cut(s) 589, 607, 616
MboII GAAGA 2 cut(s) 224, 626
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 2 cut(s) 211, 504
MluCI AATT 3 cut(s) 306, 470, 732
MlyI GAGTC 2 cut(s) 35, 47
MnlI CCTC 3 cut(s) 354, 367, 555
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 8 cut(s) 114, 221, 309, 369, 381, 510, 645, 731
MslI CAYNNNNRTG 2 cut(s) 457, 527
MwoI GCNNNNNNNGC 2 cut(s) 206, 673
NcoI CCATGG 2 cut(s) 128, 483
NdeII GATC 3 cut(s) 589, 607, 616
NlaIII CATG 8 cut(s) 132, 156, 215, 487, 498, 508, 599, 614
NspI RCATGY 1 cut(s) 599
PagI TCATGA 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 4 cut(s) 124, 334, 547, 709
PleI GAGTC 2 cut(s) 34, 46
PpsI GAGTC 2 cut(s) 34, 46
Ppu21I YACGTR 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 381
PsiI TTATAA 1 cut(s) 539
PspPI GGNCC 1 cut(s) 466
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 2 cut(s) 80, 727
RsaNI GTAC 2 cut(s) 79, 726
RseI CAYNNNNRTG 2 cut(s) 457, 527
SalI GTCGAC 1 cut(s) 40
SaqAI TTAA 8 cut(s) 114, 221, 309, 369, 381, 510, 645, 731
Sau3AI GATC 3 cut(s) 589, 607, 616
Sau96I GGNCC 1 cut(s) 466
SchI GAGTC 2 cut(s) 35, 47
SduI GDGCHC 2 cut(s) 211, 504
SetI ASST 9 cut(s) 47, 143, 208, 259, 378, 390, 580, 605, 702
SfaNI GCATC 2 cut(s) 366, 728
SmiMI CAYNNNNRTG 2 cut(s) 457, 527
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 3 cut(s) 306, 470, 732
SspI AATATT 2 cut(s) 274, 425
SspMI CTAG 2 cut(s) 20, 195
StyI CCWWGG 2 cut(s) 128, 483
TaiI ACGT 2 cut(s) 47, 259
TaqI TCGA 1 cut(s) 41
TasI AATT 3 cut(s) 306, 470, 732
TatI WGTACW 2 cut(s) 78, 725
TfiI GAWTC 4 cut(s) 124, 334, 547, 709
Tru1I TTAA 8 cut(s) 114, 221, 309, 369, 381, 510, 645, 731
Tru9I TTAA 8 cut(s) 114, 221, 309, 369, 381, 510, 645, 731
TspDTI ATGAA 7 cut(s) 66, 228, 441, 533, 539, 627, 672
VneI GTGCAC 2 cut(s) 207, 500
VspI ATTAAT 1 cut(s) 381
XbaI TCTAGA 1 cut(s) 194
XceI RCATGY 1 cut(s) 599
XmiI GTMKAC 2 cut(s) 41, 253
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 2 cut(s) 20, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.