Rh1DG150400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000143
Physical Location & Seq
Reverse (-)
31497265 .. 31498439
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG150400.1

Sequence Viewer

Length: 465 bp
ATGAATCCGAGTTCTACATCACTTAGAGAGCCACAAGTGAAAATCAATAATCGAGGGCGTCCACGTAAAGAAGATAGTTCCACTCGTCGTTTACCTTCTGCCTTTGAGTATATGAATGCATTTTCAGGCCATGATAGTCATTTATCGGATCCTACAGTTGGGTCTAGAGCTCAAGGAAAAAATTTGAAGAAGCATTCAAAGAATCAAAGAGAAGGAAGGACCAAAGAGTCGGCAGCATCCATAAAAAGGCAAAACAAAGAGTTTAAAAATTCAAAACAAAAGGTAAATTTGATATATCAATCTGTTCCAATTCCTCCAGTTACTCCTCTATGGCACAGGTACCAAGTTAATAATGGACAGTTGTACAACATTTATGAGCAACGCATAGATCAATTCAAGAAACTCGAAAATATGGAAGACGTTGCCACCACAGATACATTTTTAGACATTGTGCATCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

154

Amino Acids

17.83

Weight (kDa)

9.85

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 226
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 339
AclWI GGATC 2 cut(s) 143, 156
AcsI RAATTY 3 cut(s) 181, 268, 286
AcyI GRCGYC 1 cut(s) 58
AfaI GTAC 2 cut(s) 341, 365
AfiI CCNNNNNNNGG 2 cut(s) 158, 246
AgsI TTSAA 4 cut(s) 187, 198, 273, 397
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 172
AlwI GGATC 2 cut(s) 143, 156
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 3 cut(s) 181, 268, 286
Asp718I GGTACC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 219
AvaII GGWCC 1 cut(s) 219
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 245
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 2 cut(s) 150, 341
BmsI GCATC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 246
Bse1I ACTGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 158, 246
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 158, 246
BsmI GAATGC 2 cut(s) 121, 193
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 148, 388
BspANI GGCC 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 150, 341
BspPI GGATC 2 cut(s) 143, 156
BspT107I GGYRCC 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 1 cut(s) 317
BssMI GATC 2 cut(s) 148, 388
BssNI GRCGYC 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 157, 360
BstACI GRCGYC 1 cut(s) 58
BstAUI TGTACA 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 236
BstKTI GATC 2 cut(s) 151, 391
BstMBI GATC 2 cut(s) 148, 388
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 219
CseI GACGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 340, 364
CviAII CATG 1 cut(s) 131
CviJI RGCY 3 cut(s) 31, 129, 170
CviKI_1 RGCY 3 cut(s) 31, 129, 170
CviQI GTAC 2 cut(s) 340, 364
DdeI CTNAG 1 cut(s) 23
DpnI GATC 2 cut(s) 150, 390
DpnII GATC 2 cut(s) 148, 388
DraI TTTAAA 1 cut(s) 265
DrdI GACNNNNNNGTC 1 cut(s) 226
DseDI GACNNNNNNGTC 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 1 cut(s) 134
FaiI YATR 9 cut(s) 111, 113, 132, 242, 295, 331, 375, 386, 413
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 165
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 129
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 134
HinfI GANTC 3 cut(s) 4, 202, 227
Hpy166II GTNNAC 2 cut(s) 62, 92
Hpy188I TCNGA 2 cut(s) 9, 148
Hpy188III TCNNGA 3 cut(s) 165, 397, 458
Hpy8I GTNNAC 2 cut(s) 62, 92
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 3 cut(s) 105, 206, 210
HpyCH4III ACNGT 2 cut(s) 157, 360
HpyCH4IV ACGT 2 cut(s) 64, 420
HpyCH4V TGCA 2 cut(s) 119, 454
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 2 cut(s) 64, 420
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 134
KpnI GGTACC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 148, 388
LpnPI CCDG 3 cut(s) 111, 322, 330
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 64, 420
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 150, 390
MboI GATC 2 cut(s) 148, 388
MboII GAAGA 3 cut(s) 83, 199, 428
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 5 cut(s) 181, 268, 286, 309, 392
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 3 cut(s) 47, 324, 336
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 2 cut(s) 264, 348
Mva1269I GAATGC 2 cut(s) 121, 193
NdeII GATC 2 cut(s) 148, 388
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 150, 341
NsiI ATGCAT 1 cut(s) 121
PctI GAATGC 2 cut(s) 121, 193
PfeI GAWTC 2 cut(s) 4, 202
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 150, 341
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 2 cut(s) 341, 365
RsaNI GTAC 2 cut(s) 340, 364
SacI GAGCTC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 264, 348
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 148, 388
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 172
SetI ASST 6 cut(s) 67, 97, 172, 285, 341, 423
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 5 cut(s) 181, 268, 286, 309, 392
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 172
TaaI ACNGT 2 cut(s) 157, 360
TaiI ACGT 2 cut(s) 67, 423
TaqI TCGA 2 cut(s) 52, 405
TasI AATT 5 cut(s) 181, 268, 286, 309, 392
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 2 cut(s) 4, 202
Tru1I TTAA 2 cut(s) 264, 348
Tru9I TTAA 2 cut(s) 264, 348
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 17, 128
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 3 cut(s) 181, 268, 286
XbaI TCTAGA 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.