associated with SET domains
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 344, 497 |
| AccB1I | GGYRCC | 1 cut(s) | 635 |
| AccI | GTMKAC | 2 cut(s) | 511, 875 |
| AccII | CGCG | 1 cut(s) | 1433 |
| AciI | CCGC | 5 cut(s) | 332, 662, 1104, 1313, 1433 |
| AclWI | GGATC | 2 cut(s) | 11, 572 |
| AcsI | RAATTY | 2 cut(s) | 759, 991 |
| AcuI | CTGAAG | 1 cut(s) | 987 |
| AfaI | GTAC | 6 cut(s) | 202, 353, 543, 629, 1227, 1244 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1100 |
| AgsI | TTSAA | 4 cut(s) | 320, 623, 893, 909 |
| AhlI | ACTAGT | 1 cut(s) | 307 |
| AjnI | CCWGG | 1 cut(s) | 205 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 543, 575 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1376, 1408 |
| AluBI | AGCT | 6 cut(s) | 40, 790, 979, 1159, 1178, 1335 |
| AluI | AGCT | 6 cut(s) | 40, 790, 979, 1159, 1178, 1335 |
| Alw26I | GTCTC | 5 cut(s) | 138, 518, 656, 699, 938 |
| AlwI | GGATC | 2 cut(s) | 11, 572 |
| AoxI | GGCC | 2 cut(s) | 1091, 1256 |
| ApeKI | GCWGC | 3 cut(s) | 40, 979, 1220 |
| ApoI | RAATTY | 2 cut(s) | 759, 991 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 602, 634 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1071 |
| AspS9I | GGNCC | 1 cut(s) | 594 |
| AsuC2I | CCSGG | 1 cut(s) | 592 |
| AsuHPI | GGTGA | 4 cut(s) | 176, 371, 746, 1219 |
| AvaII | GGWCC | 1 cut(s) | 594 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 619, 652, 705, 738 |
| BanI | GGYRCC | 1 cut(s) | 635 |
| BanII | GRGCYC | 1 cut(s) | 397 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1209, 1241 |
| BauI | CACGAG | 1 cut(s) | 696 |
| BbsI | GAAGAC | 2 cut(s) | 975, 1455 |
| BbvI | GCAGC | 3 cut(s) | 27, 966, 1232 |
| BccI | CCATC | 2 cut(s) | 725, 1409 |
| BceAI | ACGGC | 1 cut(s) | 1078 |
| BciT130I | CCWGG | 1 cut(s) | 207 |
| BciVI | GTATCC | 2 cut(s) | 706, 1317 |
| BclI | TGATCA | 2 cut(s) | 22, 279 |
| BcnI | CCSGG | 1 cut(s) | 592 |
| BcoDI | GTCTC | 5 cut(s) | 138, 518, 656, 699, 938 |
| BcuI | ACTAGT | 1 cut(s) | 307 |
| BfaI | CTAG | 4 cut(s) | 308, 489, 1163, 1371 |
| BfmI | CTRYAG | 1 cut(s) | 777 |
| BfuI | GTATCC | 2 cut(s) | 706, 1317 |
| BisI | GCNGC | 3 cut(s) | 41, 980, 1221 |
| BlsI | GCNGC | 3 cut(s) | 42, 981, 1222 |
| BmcAI | AGTACT | 1 cut(s) | 353 |
| Bme1390I | CCNGG | 2 cut(s) | 207, 592 |
| Bme18I | GGWCC | 1 cut(s) | 594 |
| BmgT120I | GGNCC | 1 cut(s) | 594 |
| BmiI | GGNNCC | 2 cut(s) | 637, 688 |
| BmrFI | CCNGG | 2 cut(s) | 207, 592 |
| BmrI | ACTGGG | 1 cut(s) | 554 |
| BmsI | GCATC | 5 cut(s) | 161, 415, 454, 458, 591 |
| BmuI | ACTGGG | 1 cut(s) | 554 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1234, 1427 |
| BpiI | GAAGAC | 2 cut(s) | 975, 1455 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 569, 601, 571, 603 |
| BpuEI | CTTGAG | 2 cut(s) | 1164, 1331 |
| BpuMI | CCSGG | 1 cut(s) | 592 |
| BsaBI | GATNNNNATC | 1 cut(s) | 21 |
| BsaI | GGTCTC | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 1 cut(s) | 590 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 901, 931 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1100 |
| Bse118I | RCCGGY | 1 cut(s) | 1258 |
| Bse1I | ACTGG | 2 cut(s) | 549, 764 |
| Bse8I | GATNNNNATC | 1 cut(s) | 21 |
| BseBI | CCWGG | 1 cut(s) | 207 |
| BseDI | CCNNGG | 1 cut(s) | 590 |
| BseGI | GGATG | 2 cut(s) | 430, 736 |
| BseJI | GATNNNNATC | 1 cut(s) | 21 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1100 |
| BseMII | CTCAG | 3 cut(s) | 444, 789, 1139 |
| BseNI | ACTGG | 2 cut(s) | 549, 764 |
| BseRI | GAGGAG | 2 cut(s) | 1217, 1283 |
| BseXI | GCAGC | 3 cut(s) | 27, 966, 1232 |
| Bsh1236I | CGCG | 1 cut(s) | 1433 |
| Bsh1285I | CGRYCG | 1 cut(s) | 742 |
| BshFI | GGCC | 2 cut(s) | 1093, 1258 |
| BshNI | GGYRCC | 1 cut(s) | 635 |
| BsiEI | CGRYCG | 1 cut(s) | 742 |
| BsiSI | CCGG | 2 cut(s) | 592, 1259 |
| BslFI | GGGAC | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1100 |
| BsmAI | GTCTC | 5 cut(s) | 138, 518, 656, 699, 938 |
| BsmBI | CGTCTC | 1 cut(s) | 518 |
| BsmFI | GGGAC | 1 cut(s) | 318 |
| BsmI | GAATGC | 1 cut(s) | 131 |
| BsnI | GGCC | 2 cut(s) | 1093, 1258 |
| Bso31I | GGTCTC | 1 cut(s) | 138 |
| Bsp1286I | GDGCHC | 1 cut(s) | 397 |
| Bsp143I | GATC | 7 cut(s) | 16, 22, 279, 564, 739, 1056, 1360 |
| BspACI | CCGC | 5 cut(s) | 332, 662, 1104, 1313, 1433 |
| BspANI | GGCC | 2 cut(s) | 1093, 1258 |
| BspCNI | CTCAG | 3 cut(s) | 445, 790, 1138 |
| BspFNI | CGCG | 1 cut(s) | 1433 |
| BspLI | GGNNCC | 2 cut(s) | 637, 688 |
| BspMAI | CTGCAG | 1 cut(s) | 781 |
| BspPI | GGATC | 2 cut(s) | 11, 572 |
| BspT107I | GGYRCC | 1 cut(s) | 635 |
| BspTNI | GGTCTC | 1 cut(s) | 138 |
| BsrFI | RCCGGY | 1 cut(s) | 1258 |
| BsrI | ACTGG | 2 cut(s) | 549, 764 |
| BssAI | RCCGGY | 1 cut(s) | 1258 |
| BssECI | CCNNGG | 1 cut(s) | 590 |
| BssMI | GATC | 7 cut(s) | 16, 22, 279, 564, 739, 1056, 1360 |
| BssSI | CACGAG | 1 cut(s) | 696 |
| Bst2BI | CACGAG | 1 cut(s) | 696 |
| Bst2UI | CCWGG | 1 cut(s) | 207 |
| Bst4CI | ACNGT | 6 cut(s) | 155, 356, 632, 949, 1043, 1295 |
| Bst6I | CTCTTC | 4 cut(s) | 315, 383, 828, 1077 |
| BstC8I | GCNNGC | 4 cut(s) | 670, 1091, 1260, 1333 |
| BstDEI | CTNAG | 5 cut(s) | 453, 471, 798, 807, 1125 |
| BstF5I | GGATG | 2 cut(s) | 430, 736 |
| BstFNI | CGCG | 1 cut(s) | 1433 |
| BstKTI | GATC | 7 cut(s) | 19, 25, 282, 567, 742, 1059, 1363 |
| BstMAI | GTCTC | 5 cut(s) | 138, 518, 656, 699, 938 |
| BstMBI | GATC | 7 cut(s) | 16, 22, 279, 564, 739, 1056, 1360 |
| BstMCI | CGRYCG | 1 cut(s) | 742 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 455, 464 |
| BstNI | CCWGG | 1 cut(s) | 207 |
| BstNSI | RCATGY | 2 cut(s) | 672, 1136 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1234, 1427 |
| BstSCI | CCNGG | 2 cut(s) | 205, 590 |
| BstSFI | CTRYAG | 1 cut(s) | 777 |
| BstUI | CGCG | 1 cut(s) | 1433 |
| BstV1I | GCAGC | 3 cut(s) | 27, 966, 1232 |
| BstV2I | GAAGAC | 2 cut(s) | 975, 1455 |
| BstX2I | RGATCY | 1 cut(s) | 564 |
| BstYI | RGATCY | 1 cut(s) | 564 |
| BsuI | GTATCC | 2 cut(s) | 706, 1317 |
| BsuRI | GGCC | 2 cut(s) | 1093, 1258 |
| BtgZI | GCGATG | 2 cut(s) | 993, 1372 |
| BtsCI | GGATG | 2 cut(s) | 430, 736 |
| BtsIMutI | CAGTG | 3 cut(s) | 160, 192, 1300 |
| Cac8I | GCNNGC | 4 cut(s) | 670, 1091, 1260, 1333 |
| Cfr10I | RCCGGY | 1 cut(s) | 1258 |
| Cfr13I | GGNCC | 1 cut(s) | 594 |
| CpoI | CGGWCCG | 1 cut(s) | 594 |
| Csp6I | GTAC | 6 cut(s) | 201, 352, 542, 628, 1226, 1243 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 679, 714, 1290, 1325 |
| CspI | CGGWCCG | 1 cut(s) | 594 |
| CviAII | CATG | 7 cut(s) | 372, 413, 507, 669, 973, 1133, 1274 |
| CviQI | GTAC | 6 cut(s) | 201, 352, 542, 628, 1226, 1243 |
| DdeI | CTNAG | 5 cut(s) | 453, 471, 798, 807, 1125 |
| DpnI | GATC | 7 cut(s) | 18, 24, 281, 566, 741, 1058, 1362 |
| DpnII | GATC | 7 cut(s) | 16, 22, 279, 564, 739, 1056, 1360 |
| Eam1104I | CTCTTC | 4 cut(s) | 315, 383, 828, 1077 |
| EarI | CTCTTC | 4 cut(s) | 315, 383, 828, 1077 |
| EciI | GGCGGA | 2 cut(s) | 1119, 1328 |
| Eco24I | GRGCYC | 1 cut(s) | 397 |
| Eco31I | GGTCTC | 1 cut(s) | 138 |
| Eco32I | GATATC | 1 cut(s) | 850 |
| Eco47I | GGWCC | 1 cut(s) | 594 |
| Eco57I | CTGAAG | 1 cut(s) | 987 |
| EcoRII | CCWGG | 1 cut(s) | 205 |
| EcoRV | GATATC | 1 cut(s) | 850 |
| EcoT22I | ATGCAT | 2 cut(s) | 430, 451 |
| EcoT38I | GRGCYC | 1 cut(s) | 397 |
| Esp3I | CGTCTC | 1 cut(s) | 518 |
| FaeI | CATG | 7 cut(s) | 375, 416, 510, 672, 976, 1136, 1277 |
| FaqI | GGGAC | 1 cut(s) | 318 |
| FatI | CATG | 7 cut(s) | 371, 412, 506, 668, 972, 1132, 1273 |
| FauI | CCCGC | 1 cut(s) | 325 |
| FauNDI | CATATG | 1 cut(s) | 718 |
| FbaI | TGATCA | 2 cut(s) | 22, 279 |
| FblI | GTMKAC | 2 cut(s) | 511, 875 |
| Fnu4HI | GCNGC | 3 cut(s) | 41, 980, 1221 |
| FokI | GGATG | 2 cut(s) | 437, 743 |
| FriOI | GRGCYC | 1 cut(s) | 397 |
| Fsp4HI | GCNGC | 3 cut(s) | 41, 980, 1221 |
| FspBI | CTAG | 4 cut(s) | 308, 489, 1163, 1371 |
| GluI | GCNGC | 3 cut(s) | 41, 980, 1221 |
| HaeIII | GGCC | 2 cut(s) | 1093, 1258 |
| HapII | CCGG | 2 cut(s) | 592, 1259 |
| Hin1II | CATG | 7 cut(s) | 375, 416, 510, 672, 976, 1136, 1277 |
| HincII | GTYRAC | 1 cut(s) | 1138 |
| HindII | GTYRAC | 1 cut(s) | 1138 |
| HinfI | GANTC | 8 cut(s) | 238, 773, 818, 872, 905, 1004, 1067, 1230 |
| HpaII | CCGG | 2 cut(s) | 592, 1259 |
| HphI | GGTGA | 4 cut(s) | 176, 371, 746, 1219 |
| Hpy166II | GTNNAC | 4 cut(s) | 512, 876, 1039, 1138 |
| Hpy188III | TCNNGA | 6 cut(s) | 20, 26, 317, 675, 707, 1181 |
| Hpy8I | GTNNAC | 4 cut(s) | 512, 876, 1039, 1138 |
| Hpy99I | CGWCG | 1 cut(s) | 1250 |
| HpyAV | CCTTC | 5 cut(s) | 23, 284, 469, 813, 1207 |
| HpyCH4III | ACNGT | 6 cut(s) | 155, 356, 632, 949, 1043, 1295 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 129, 234, 428, 449, 572, 668, 779, 1022 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 455, 464 |
| HpyF3I | CTNAG | 5 cut(s) | 453, 471, 798, 807, 1125 |
| Hsp92II | CATG | 7 cut(s) | 375, 416, 510, 672, 976, 1136, 1277 |
| KroI | GCCGGC | 1 cut(s) | 1258 |
| KroNI | GCCGGC | 1 cut(s) | 1260 |
| Ksp22I | TGATCA | 2 cut(s) | 22, 279 |
| Kzo9I | GATC | 7 cut(s) | 16, 22, 279, 564, 739, 1056, 1360 |
| LmnI | GCTCC | 2 cut(s) | 686, 1270 |
| Lsp1109I | GCAGC | 3 cut(s) | 27, 966, 1232 |
| LweI | GCATC | 5 cut(s) | 161, 415, 454, 458, 591 |
| MaeI | CTAG | 4 cut(s) | 308, 489, 1163, 1371 |
| MaeIII | GTNAC | 4 cut(s) | 209, 734, 937, 1043 |
| MalI | GATC | 7 cut(s) | 18, 24, 281, 566, 741, 1058, 1362 |
| MboI | GATC | 7 cut(s) | 16, 22, 279, 564, 739, 1056, 1360 |
| MfeI | CAATTG | 1 cut(s) | 1023 |
| MflI | RGATCY | 1 cut(s) | 564 |
| MhlI | GDGCHC | 1 cut(s) | 397 |
| MluCI | AATT | 8 cut(s) | 5, 338, 517, 599, 616, 759, 991, 1023 |
| MlyI | GAGTC | 3 cut(s) | 827, 881, 1224 |
| MmeI | TCCRAC | 2 cut(s) | 846, 938 |
| Mph1103I | ATGCAT | 2 cut(s) | 430, 451 |
| MroNI | GCCGGC | 1 cut(s) | 1258 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1071 |
| MseI | TTAA | 2 cut(s) | 951, 1458 |
| MslI | CAYNNNNRTG | 1 cut(s) | 721 |
| MspI | CCGG | 2 cut(s) | 592, 1259 |
| MspR9I | CCNGG | 2 cut(s) | 207, 592 |
| MunI | CAATTG | 1 cut(s) | 1023 |
| Mva1269I | GAATGC | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 207 |
| MvnI | CGCG | 1 cut(s) | 1433 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 455, 464 |
| NaeI | GCCGGC | 1 cut(s) | 1260 |
| NciI | CCSGG | 1 cut(s) | 592 |
| NdeI | CATATG | 1 cut(s) | 718 |
| NdeII | GATC | 7 cut(s) | 16, 22, 279, 564, 739, 1056, 1360 |
| NgoMIV | GCCGGC | 1 cut(s) | 1258 |
| NlaIII | CATG | 7 cut(s) | 375, 416, 510, 672, 976, 1136, 1277 |
| NlaIV | GGNNCC | 2 cut(s) | 637, 688 |
| NmuCI | GTSAC | 2 cut(s) | 734, 937 |
| NsiI | ATGCAT | 2 cut(s) | 430, 451 |
| NspI | RCATGY | 2 cut(s) | 672, 1136 |
| PaeI | GCATGC | 1 cut(s) | 672 |
| PctI | GAATGC | 1 cut(s) | 131 |
| PdiI | GCCGGC | 1 cut(s) | 1260 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1071 |
| PfeI | GAWTC | 5 cut(s) | 238, 773, 905, 1004, 1067 |
| PkrI | GCNGC | 3 cut(s) | 42, 981, 1222 |
| Ple19I | CGATCG | 1 cut(s) | 742 |
| PleI | GAGTC | 3 cut(s) | 826, 880, 1224 |
| PpsI | GAGTC | 3 cut(s) | 826, 880, 1224 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1234, 1427 |
| PsiI | TTATAA | 2 cut(s) | 344, 497 |
| Psp6I | CCWGG | 1 cut(s) | 205 |
| PspGI | CCWGG | 1 cut(s) | 205 |
| PspN4I | GGNNCC | 2 cut(s) | 637, 688 |
| PspPI | GGNCC | 1 cut(s) | 594 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1020, 1052 |
| PstI | CTGCAG | 1 cut(s) | 781 |
| PsuI | RGATCY | 1 cut(s) | 564 |
| PvuI | CGATCG | 1 cut(s) | 742 |
| RsaI | GTAC | 6 cut(s) | 202, 353, 543, 629, 1227, 1244 |
| RsaNI | GTAC | 6 cut(s) | 201, 352, 542, 628, 1226, 1243 |
| RseI | CAYNNNNRTG | 1 cut(s) | 721 |
| Rsr2I | CGGWCCG | 1 cut(s) | 594 |
| RsrII | CGGWCCG | 1 cut(s) | 594 |
| SaqAI | TTAA | 2 cut(s) | 951, 1458 |
| SatI | GCNGC | 3 cut(s) | 41, 980, 1221 |
| Sau3AI | GATC | 7 cut(s) | 16, 22, 279, 564, 739, 1056, 1360 |
| Sau96I | GGNCC | 1 cut(s) | 594 |
| ScaI | AGTACT | 1 cut(s) | 353 |
| SchI | GAGTC | 3 cut(s) | 827, 881, 1224 |
| ScrFI | CCNGG | 2 cut(s) | 207, 592 |
| SduI | GDGCHC | 1 cut(s) | 397 |
| SetI | ASST | 9 cut(s) | 42, 295, 494, 792, 981, 1161, 1180, 1209, 1337 |
| SfaNI | GCATC | 5 cut(s) | 161, 415, 454, 458, 591 |
| SfcI | CTRYAG | 1 cut(s) | 777 |
| SinI | GGWCC | 1 cut(s) | 594 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 721 |
| SmlI | CTYRAG | 2 cut(s) | 1179, 1346 |
| SmoI | CTYRAG | 2 cut(s) | 1179, 1346 |
| SpeI | ACTAGT | 1 cut(s) | 307 |
| SphI | GCATGC | 1 cut(s) | 672 |
| Sse9I | AATT | 8 cut(s) | 5, 338, 517, 599, 616, 759, 991, 1023 |
| SsiI | CCGC | 5 cut(s) | 332, 662, 1104, 1313, 1433 |
| SspI | AATATT | 1 cut(s) | 889 |
| SspMI | CTAG | 4 cut(s) | 308, 489, 1163, 1371 |
| StyD4I | CCNGG | 2 cut(s) | 205, 590 |
| TaaI | ACNGT | 6 cut(s) | 155, 356, 632, 949, 1043, 1295 |
| TaqI | TCGA | 1 cut(s) | 82 |
| TaqII | GACCGA | 1 cut(s) | 611 |
| TasI | AATT | 8 cut(s) | 5, 338, 517, 599, 616, 759, 991, 1023 |
| TatI | WGTACW | 3 cut(s) | 200, 351, 541 |
| TfiI | GAWTC | 5 cut(s) | 238, 773, 905, 1004, 1067 |
| Tru1I | TTAA | 2 cut(s) | 951, 1458 |
| Tru9I | TTAA | 2 cut(s) | 951, 1458 |
| TscAI | CASTG | 3 cut(s) | 160, 199, 1300 |
| TseFI | GTSAC | 2 cut(s) | 734, 937 |
| TseI | GCWGC | 3 cut(s) | 40, 979, 1220 |
| Tsp45I | GTSAC | 2 cut(s) | 734, 937 |
| TspDTI | ATGAA | 8 cut(s) | 66, 420, 495, 846, 989, 996, 1200, 1290 |
| TspGWI | ACGGA | 1 cut(s) | 956 |
| TspRI | CASTG | 3 cut(s) | 160, 199, 1300 |
| VpaK11BI | GGWCC | 1 cut(s) | 594 |
| XapI | RAATTY | 2 cut(s) | 759, 991 |
| XceI | RCATGY | 2 cut(s) | 672, 1136 |
| XmiI | GTMKAC | 2 cut(s) | 511, 875 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1071 |
| XspI | CTAG | 4 cut(s) | 308, 489, 1163, 1371 |
| ZrmI | AGTACT | 1 cut(s) | 353 |
| Zsp2I | ATGCAT | 2 cut(s) | 430, 451 |