Rw5G048430

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000143
Physical Location & Seq
Reverse (-)
84212354 .. 84217547
5194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048430.1

Sequence Viewer

Length: 1797 bp
ATGGGCTTCGCTGGCAAGGCTCGGACGATGTCAATCTGTTGGACGACGTCGTTTTACAAATATACATGCTTGATTGACATTACATTTAATCAACATCACTTGCTTGTGTTTATGTTTTTGTTTTTCAATTACAACACACAGGATCAACAACATGGTGATACCTTAATTCCAGATAGCAGGGTTGAAGTGGATGATGTATTAGATCATACCAATCAATTTACAACTGATAAGATATTCAAAAGTAAAGCTGAGTTGATTGAATGGACTCGTTCAGAAGGAACGAGAAACAATTTTGTGATTGTTATCCGAAGGTCTGATTCTGGAAAAATTGGCAATAAGAAGAAGAGACCTAAAATAAGATTTTGTTGTGAGAGGAATGGTCAGTATAAAGCATATAAGTCTTTGAAGTCTGATATAAATACACAAGAATCTGATGAAGATAGTAGAAAAGAAAAGCGTCTGAGGCTTACTGGTACAAAGAAATGTGGATGCCCATTTTCATTAAGAGGCATCAATATTGAAAATGGAGACGAATGGAAGTTAGAGGTGGTTTGTGGAGTGCATAATCATGCTGCTTCAGAATACCTTCATGGGCACTCATTCGCAGGTCGATTGTCAGAAAAAGAAAATTCATTGTTGATGGATATGTCCACAAGTTTAATGAGGCCTAAAGAGATTTTGACAGCCATCAAGAGAAGAAATCCGAAGAATGTGACAGCAATGAAGACAATATATAATGCCAGACAACGGCATAGGACAAAAATTAGGGCTGGGAGAACACAAATGCAGCAACTGCTAAGTAACTTGTTTGAGCACAAGTATATTGAGCATCATAGAAGTGATGGTGATAAAGTAACGGATTTGTTTTGGTGTCACCCTTACAGCATTGAGATTTTACGTACATTTCCATATGTACTTATCATGGACTGCACTTACAAAACAAATAGATATCGCTTTCCTCTTCTGGAGATTGTTGGGATCACGTCCACTAACAAGACCTTCAACGTTGCATTTGCTTACATATCAAAAGAGAAAGAAGACAACTATACATGGGCCTTAACTAGATTGAAGACTCTTTTAGATGACAAATGTGCTCCAAGTGTGATGGTTACAGATCGAGAATTGACACTGATGAATTCTATAAGTAATGTATTCCCGAATACACGACATGTATTATGTTGTTGGCACATCAACAAGCAAGTGTTAACTCATTGCAAGAAATTATTCGCAACAAAAGAAGGATGGGATACATTTAATAATGATTGGCAGTCCGTGGTGAATTCAAATTCTGAAGATGAGTACTCGCACAATTTAAAATTACTTGAATCAAAATTTAGCACATTTCCTGGGGCCATCAATTATTTGAAAACCACTTGGTTAAACAGCTATAAAGACAGATTTGTGGCTGCATGGATAGATACTTGTATGCATCTTGAGATGGGGCATTTGATCGCTACTTGCTATGGAGTTGTTGTGATAAACTTATCTGATAAACAGTGCCTTACCTTTCTTCCTTTGACTGAACACATTACTGGACGATTTCAGAACCAAGAACTGCCTGAAATTGGAATTGGTTTTGTTAACGGAGACCACTTTGTGCAGGTTTCTTTGCAAGCGGGATGCCCATTACCACCAATCCCACCAAATTGGTACCCCCATGCTGATGATAAAGCAAGATCATTATACAATAGATACAAGGATCGTCTGCATCAATATACCCAAATACCCCATGCAGAAAGAGTTACTGCTATTTCCGAAATTATAACTCTTGAGACTGATGAGACTATGTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

598

Amino Acids

69.57

Weight (kDa)

8.72

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 290 - 389 1.3e-11 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 305 - 399 1.5e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1763
AatII GACGTC 1 cut(s) 50
Acc36I ACCTGC 2 cut(s) 596, 1591
Acc65I GGTACC 1 cut(s) 1650
AccB1I GGYRCC 1 cut(s) 1650
AciI CCGC 1 cut(s) 1616
AclI AACGTT 1 cut(s) 1005
AclWI GGATC 3 cut(s) 150, 986, 1707
AcsI RAATTY 5 cut(s) 628, 1135, 1279, 1285, 1331
AcuI CTGAAG 2 cut(s) 561, 1311
AcyI GRCGYC 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 1597
AfaI GTAC 5 cut(s) 475, 901, 915, 1301, 1652
AfiI CCNNNNNNNGG 2 cut(s) 747, 1565
AflIII ACRYGT 1 cut(s) 1168
AjiI CACGTC 1 cut(s) 984
AjnI CCWGG 1 cut(s) 1345
AjuI GAANNNNNNNTTGG 2 cut(s) 1554, 1586
AluBI AGCT 2 cut(s) 248, 1386
AluI AGCT 2 cut(s) 248, 1386
Alw21I GWGCWC 2 cut(s) 816, 1096
Alw26I GTCTC 5 cut(s) 340, 522, 1581, 1766, 1775
AlwI GGATC 3 cut(s) 150, 986, 1707
AlwNI CAGNNNCTG 1 cut(s) 793
AoxI GGCC 3 cut(s) 665, 1053, 1350
ApeKI GCWGC 3 cut(s) 572, 787, 1406
ApoI RAATTY 5 cut(s) 628, 1135, 1279, 1285, 1331
Asp700I GAANNNNTTC 2 cut(s) 585, 1223
Asp718I GGTACC 1 cut(s) 1650
AspS9I GGNCC 2 cut(s) 1053, 1350
AsuHPI GGTGA 4 cut(s) 167, 857, 866, 1288
BaeGI GKGCMC 1 cut(s) 597
BanI GGYRCC 1 cut(s) 1650
BbsI GAAGAC 3 cut(s) 731, 1044, 1076
Bbv12I GWGCWC 2 cut(s) 816, 1096
BbvI GCAGC 3 cut(s) 559, 799, 1393
BccI CCATC 7 cut(s) 634, 695, 836, 1099, 1236, 1361, 1432
BceAI ACGGC 1 cut(s) 764
BciT130I CCWGG 1 cut(s) 1347
BciVI GTATCC 1 cut(s) 1240
BcoDI GTCTC 5 cut(s) 340, 522, 1581, 1766, 1775
BfaI CTAG 1 cut(s) 1062
BfuAI ACCTGC 2 cut(s) 596, 1591
BfuI GTATCC 1 cut(s) 1240
BisI GCNGC 3 cut(s) 573, 788, 1407
BlsI GCNGC 3 cut(s) 574, 789, 1408
BmcAI AGTACT 1 cut(s) 1301
Bme1390I CCNGG 1 cut(s) 1347
BmgBI CACGTC 1 cut(s) 984
BmgT120I GGNCC 2 cut(s) 1053, 1350
BmiI GGNNCC 2 cut(s) 1351, 1652
BmrFI CCNGG 1 cut(s) 1347
BmsI GCATC 6 cut(s) 479, 519, 838, 1438, 1610, 1717
BpiI GAAGAC 3 cut(s) 731, 1044, 1076
BpmI CTGGAG 1 cut(s) 986
BpuEI CTTGAG 2 cut(s) 1454, 1790
BsaAI YACGTR 1 cut(s) 899
BsaBI GATNNNNATC 2 cut(s) 32, 302
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 2 cut(s) 340, 1581
BsaJI CCNNGG 2 cut(s) 1272, 1346
BsaXI ACNNNNNCTCC 2 cut(s) 1458, 1488
Bsc4I CCNNNNNNNGG 2 cut(s) 747, 1565
Bse1I ACTGG 2 cut(s) 475, 1537
Bse3DI GCAATG 2 cut(s) 726, 1210
Bse8I GATNNNNATC 2 cut(s) 32, 302
BseBI CCWGG 1 cut(s) 1347
BseDI CCNNGG 2 cut(s) 1272, 1346
BseGI GGATG 4 cut(s) 196, 494, 1247, 1625
BseJI GATNNNNATC 2 cut(s) 32, 302
BseLI CCNNNNNNNGG 2 cut(s) 747, 1565
BseMI GCAATG 2 cut(s) 726, 1210
BseMII CTCAG 2 cut(s) 240, 452
BseNI ACTGG 2 cut(s) 475, 1537
BseSI GKGCMC 1 cut(s) 597
BseXI GCAGC 3 cut(s) 559, 799, 1393
BseYI CCCAGC 1 cut(s) 770
BsgI GTGCAG 2 cut(s) 913, 1619
BshFI GGCC 3 cut(s) 667, 1055, 1352
BshNI GGYRCC 1 cut(s) 1650
BsiHKAI GWGCWC 2 cut(s) 816, 1096
BslI CCNNNNNNNGG 2 cut(s) 747, 1565
BsmAI GTCTC 5 cut(s) 340, 522, 1581, 1766, 1775
BsmBI CGTCTC 1 cut(s) 522
BsnI GGCC 3 cut(s) 667, 1055, 1352
Bso31I GGTCTC 2 cut(s) 340, 1581
Bsp1286I GDGCHC 3 cut(s) 597, 816, 1096
Bsp143I GATC 7 cut(s) 142, 202, 978, 1114, 1449, 1676, 1699
BspACI CCGC 1 cut(s) 1616
BspANI GGCC 3 cut(s) 667, 1055, 1352
BspCNI CTCAG 2 cut(s) 241, 453
BspLI GGNNCC 2 cut(s) 1351, 1652
BspMI ACCTGC 2 cut(s) 596, 1591
BspPI GGATC 3 cut(s) 150, 986, 1707
BspT107I GGYRCC 1 cut(s) 1650
BspTNI GGTCTC 2 cut(s) 340, 1581
BsrDI GCAATG 2 cut(s) 726, 1210
BsrI ACTGG 2 cut(s) 475, 1537
BssECI CCNNGG 2 cut(s) 1272, 1346
BssMI GATC 7 cut(s) 142, 202, 978, 1114, 1449, 1676, 1699
BssNI GRCGYC 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 1347
Bst4CI ACNGT 1 cut(s) 1497
Bst6I CTCTTC 2 cut(s) 338, 966
BstACI GRCGYC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 793
BstBAI YACGTR 1 cut(s) 899
BstC8I GCNNGC 2 cut(s) 13, 1614
BstDEI CTNAG 3 cut(s) 249, 461, 797
BstDSI CCRYGG 1 cut(s) 1272
BstF5I GGATG 4 cut(s) 196, 494, 1247, 1625
BstKTI GATC 7 cut(s) 145, 205, 981, 1117, 1452, 1679, 1702
BstMAI GTCTC 5 cut(s) 340, 522, 1581, 1766, 1775
BstMBI GATC 7 cut(s) 142, 202, 978, 1114, 1449, 1676, 1699
BstMWI GCNNNNNNNGC 4 cut(s) 12, 17, 463, 793
BstNI CCWGG 1 cut(s) 1347
BstNSI RCATGY 2 cut(s) 69, 1172
BstSCI CCNGG 1 cut(s) 1345
BstSLI GKGCMC 1 cut(s) 597
BstSNI TACGTA 1 cut(s) 899
BstV1I GCAGC 3 cut(s) 559, 799, 1393
BstV2I GAAGAC 3 cut(s) 731, 1044, 1076
BstXI CCANNNNNNTGG 1 cut(s) 1647
BsuI GTATCC 1 cut(s) 1240
BsuRI GGCC 3 cut(s) 667, 1055, 1352
BtgI CCRYGG 1 cut(s) 1272
BtrI CACGTC 1 cut(s) 984
BtsCI GGATG 4 cut(s) 196, 494, 1247, 1625
BtsIMutI CAGTG 2 cut(s) 1127, 1502
BveI ACCTGC 2 cut(s) 596, 1591
Cac8I GCNNGC 2 cut(s) 13, 1614
CaiI CAGNNNCTG 1 cut(s) 793
Cfr13I GGNCC 2 cut(s) 1053, 1350
CseI GACGC 1 cut(s) 446
Csp6I GTAC 5 cut(s) 474, 900, 914, 1300, 1651
CviQI GTAC 5 cut(s) 474, 900, 914, 1300, 1651
DdeI CTNAG 3 cut(s) 249, 461, 797
DpnI GATC 7 cut(s) 144, 204, 980, 1116, 1451, 1678, 1701
DpnII GATC 7 cut(s) 142, 202, 978, 1114, 1449, 1676, 1699
DraI TTTAAA 1 cut(s) 1314
DraIII CACNNNGTG 1 cut(s) 1597
Eam1104I CTCTTC 2 cut(s) 338, 966
EarI CTCTTC 2 cut(s) 338, 966
Eco105I TACGTA 1 cut(s) 899
Eco147I AGGCCT 1 cut(s) 667
Eco31I GGTCTC 2 cut(s) 340, 1581
Eco32I GATATC 1 cut(s) 950
Eco57I CTGAAG 2 cut(s) 561, 1311
EcoRI GAATTC 2 cut(s) 1135, 1279
EcoRII CCWGG 1 cut(s) 1345
EcoRV GATATC 1 cut(s) 950
EcoT22I ATGCAT 1 cut(s) 1431
Esp3I CGTCTC 1 cut(s) 522
FauI CCCGC 1 cut(s) 1609
FauNDI CATATG 1 cut(s) 910
Fnu4HI GCNGC 3 cut(s) 573, 788, 1407
FokI GGATG 4 cut(s) 203, 501, 1254, 1632
Fsp4HI GCNGC 3 cut(s) 573, 788, 1407
FspBI CTAG 1 cut(s) 1062
GluI GCNGC 3 cut(s) 573, 788, 1407
GsaI CCCAGC 1 cut(s) 774
GsuI CTGGAG 1 cut(s) 986
HaeIII GGCC 3 cut(s) 667, 1055, 1352
HgaI GACGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 47
HincII GTYRAC 2 cut(s) 1206, 1582
HindII GTYRAC 2 cut(s) 1206, 1582
HinfI GANTC 5 cut(s) 265, 317, 428, 1072, 1325
HpaI GTTAAC 2 cut(s) 1206, 1582
HphI GGTGA 4 cut(s) 167, 857, 866, 1288
Hpy166II GTNNAC 4 cut(s) 651, 987, 1206, 1582
Hpy188III TCNNGA 8 cut(s) 170, 321, 691, 965, 1118, 1156, 1433, 1769
Hpy8I GTNNAC 4 cut(s) 651, 987, 1206, 1582
Hpy99I CGWCG 2 cut(s) 49, 52
HpyAV CCTTC 5 cut(s) 269, 303, 596, 1009, 1232
HpyCH4III ACNGT 1 cut(s) 1497
HpyCH4IV ACGT 4 cut(s) 47, 898, 983, 1005
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 17, 463, 793
HpyF3I CTNAG 3 cut(s) 249, 461, 797
HpySE526I ACGT 4 cut(s) 47, 898, 983, 1005
Hsp92I GRCGYC 1 cut(s) 47
KpnI GGTACC 1 cut(s) 1654
KspAI GTTAAC 2 cut(s) 1206, 1582
Kzo9I GATC 7 cut(s) 142, 202, 978, 1114, 1449, 1676, 1699
LmnI GCTCC 1 cut(s) 1099
Lsp1109I GCAGC 3 cut(s) 559, 799, 1393
LweI GCATC 6 cut(s) 479, 519, 838, 1438, 1610, 1717
MaeI CTAG 1 cut(s) 1062
MaeII ACGT 4 cut(s) 47, 898, 983, 1005
MaeIII GTNAC 6 cut(s) 712, 800, 853, 872, 1108, 1741
MalI GATC 7 cut(s) 144, 204, 980, 1116, 1451, 1678, 1701
MboI GATC 7 cut(s) 142, 202, 978, 1114, 1449, 1676, 1699
MhlI GDGCHC 3 cut(s) 597, 816, 1096
MlyI GAGTC 2 cut(s) 259, 1066
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 6 cut(s) 366, 456, 500, 538, 657, 969
Mph1103I ATGCAT 1 cut(s) 1431
MroXI GAANNNNTTC 2 cut(s) 585, 1223
MslI CAYNNNNRTG 3 cut(s) 567, 837, 1662
MspR9I CCNGG 1 cut(s) 1347
MvaI CCWGG 1 cut(s) 1347
MwoI GCNNNNNNNGC 4 cut(s) 12, 17, 463, 793
NdeI CATATG 1 cut(s) 910
NdeII GATC 7 cut(s) 142, 202, 978, 1114, 1449, 1676, 1699
NlaIV GGNNCC 2 cut(s) 1351, 1652
NmuCI GTSAC 2 cut(s) 712, 872
NsiI ATGCAT 1 cut(s) 1431
NspI RCATGY 2 cut(s) 69, 1172
PceI AGGCCT 1 cut(s) 667
PciI ACATGT 1 cut(s) 1168
PdmI GAANNNNTTC 2 cut(s) 585, 1223
PfeI GAWTC 3 cut(s) 317, 428, 1325
PflFI GACNNNGTC 2 cut(s) 28, 46
PkrI GCNGC 3 cut(s) 574, 789, 1408
PleI GAGTC 2 cut(s) 259, 1066
PpsI GAGTC 2 cut(s) 259, 1066
Ppu21I YACGTR 1 cut(s) 899
PscI ACATGT 1 cut(s) 1168
PsiI TTATAA 1 cut(s) 1763
Psp1406I AACGTT 1 cut(s) 1005
Psp6I CCWGG 1 cut(s) 1345
PspFI CCCAGC 1 cut(s) 770
PspGI CCWGG 1 cut(s) 1345
PspN4I GGNNCC 2 cut(s) 1351, 1652
PspPI GGNCC 2 cut(s) 1053, 1350
PstNI CAGNNNCTG 1 cut(s) 793
PsyI GACNNNGTC 2 cut(s) 28, 46
RsaI GTAC 5 cut(s) 475, 901, 915, 1301, 1652
RsaNI GTAC 5 cut(s) 474, 900, 914, 1300, 1651
RseI CAYNNNNRTG 3 cut(s) 567, 837, 1662
SatI GCNGC 3 cut(s) 573, 788, 1407
Sau3AI GATC 7 cut(s) 142, 202, 978, 1114, 1449, 1676, 1699
Sau96I GGNCC 2 cut(s) 1053, 1350
ScaI AGTACT 1 cut(s) 1301
SchI GAGTC 2 cut(s) 259, 1066
ScrFI CCNGG 1 cut(s) 1347
SduI GDGCHC 3 cut(s) 597, 816, 1096
SfaNI GCATC 6 cut(s) 479, 519, 838, 1438, 1610, 1717
SmiMI CAYNNNNRTG 3 cut(s) 567, 837, 1662
SmlI CTYRAG 2 cut(s) 1433, 1769
SmoI CTYRAG 2 cut(s) 1433, 1769
SnaBI TACGTA 1 cut(s) 899
SseBI AGGCCT 1 cut(s) 667
SsiI CCGC 1 cut(s) 1616
SspI AATATT 1 cut(s) 517
SspMI CTAG 1 cut(s) 1062
StuI AGGCCT 1 cut(s) 667
StyD4I CCNGG 1 cut(s) 1345
TaaI ACNGT 1 cut(s) 1497
TaiI ACGT 4 cut(s) 50, 901, 986, 1008
TaqI TCGA 2 cut(s) 610, 1117
TatI WGTACW 2 cut(s) 913, 1299
TfiI GAWTC 3 cut(s) 317, 428, 1325
TscAI CASTG 2 cut(s) 1134, 1502
TseFI GTSAC 2 cut(s) 712, 872
TseI GCWGC 3 cut(s) 572, 787, 1406
Tsp45I GTSAC 2 cut(s) 712, 872
TspDTI ATGAA 6 cut(s) 450, 489, 578, 621, 737, 1148
TspGWI ACGGA 3 cut(s) 872, 1261, 1599
TspRI CASTG 2 cut(s) 1134, 1502
Tth111I GACNNNGTC 2 cut(s) 28, 46
XapI RAATTY 5 cut(s) 628, 1135, 1279, 1285, 1331
XceI RCATGY 2 cut(s) 69, 1172
XmnI GAANNNNTTC 2 cut(s) 585, 1223
XspI CTAG 1 cut(s) 1062
ZraI GACGTC 1 cut(s) 48
ZrmI AGTACT 1 cut(s) 1301
Zsp2I ATGCAT 1 cut(s) 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.